Search Results (315)

Madhya Pradesh, a biodiversity-rich state in central India, reports sporadic non-indigenous leishmaniasis cases. Systematic entomological surveillance as part of molecular xenomonitoring in sand flies led to the discovery of a new species, Sergentomyia (Neophlebotomus) pradeepii n. sp. (Diptera: Psychodidae), from Johariya village in Sagar district, Madhya Pradesh, India. A systematic cross-sectional survey of sand flies was conducted in Bhopal, Sagar, and Hoshangabad districts of Madhya Pradesh. Standard collection methods were employed for two months, i.e., from July to August 2023. DNA barcoding targeting the mitochondrial Cytochrome c oxidase subunit I (COI) gene was performed, and the generated sequences were phylogenetically analyzed. Se. (Neo.) pradeepii, a newly recorded sand fly species, is reported in this study. Its taxonomic relationship to other congeners of subgenus Neophlebotomus is discussed. COI barcoding and phylogenetic analysis established that the specimens fit into the same taxonomic group, exhibiting negligible gene flow within the population, while a 13.4% genetic distance from congeners establishes it as a separate species. Madhya Pradesh, with its rich biodiversity and favorable conditions for sand fly proliferation, lacks systematic entomological surveillance. This study enhances the knowledge of the state’s sand fly fauna by reporting and providing a detailed morphological and molecular description of the new species. Full article

Giant clams are ecologically important coral reef animals, with many species facing imminent local extinction. While many regions have undertaken recent assessments of their biodiversity assets, persistent gaps remain even in otherwise well-surveyed areas. This study sought to understand the geographic distribution of smaller-bodied and morphologically similar giant clams, specifically Tridacna maxima and T. noae, in the eastern Indian Ocean. Due to the difficulties in reliably identifying these species using morphological characters, we confirmed species identity and investigated intraspecific variation using sequence data from the mitochondrial cytochrome C oxidase subunit I gene (COI). Seventy whole animal vouchers were newly sampled from a 1500 km span of remote northwestern Australian coastline over a decade, as part of an ongoing coral reef survey expedition of the Western Australian Museum and partners. Tridacna maxima had a limited distribution and was only genotyped from offshore oceanic reefs in the Rowley Shoals and Cocos Keeling Islands. In contrast, T. noae was well established beyond Ningaloo Reef, and was abundant at inshore sites throughout the Pilbara and Kimberley, and even offshore to Ashmore Reef. Phylogeographically, T. maxima did not group with conspecifics from the Western Pacific Ocean, including the east coast of Australia, but instead clustered with individuals from Malaysia, China, Taiwan, and Indonesia; T. noae exhibited a similar pattern. The affinity of Western Australian individuals with representatives from the Indo-Malay region and not eastern Australia will be an important consideration for these commercially important species. Novel haplotypes in both tested species occur in Western Australia. Continued sampling of eastern and central Indian Ocean giant clams, especially to continue to document the range of T. noae, is encouraged to understand connectivity in this basin. Together, these findings contribute to an improved baseline for conservation initiatives of these iconic coral reef animals in Western Australia. Full article

The tubes of polychaetes of the genus Chaetopterus (Annelida: Chaetopteridae) provide habitat for cryptic, symbiotic organisms that are often overlooked when examining diversity. Our study employed molecular phylogenetics to examine the diversity of symbiont species associated with Chaetopterus djiboutiensis stat. nov., collected from the Gulf of Tadjoura, Djibouti. A total of 15 Chaetopterus hosts and their associated symbionts were collected from nine coastal sites. Four genetic regions were targeted for PCR amplification: the mitochondrial cytochrome oxidase subunit I and 16S rDNA and the nuclear 18S rDNA and Histone H3. Chaetopterus djiboutiensis was redescribed from topotypic material and elevated to species rank, and a neotype specimen was designated. Phylogenetic and morphological analysis confirmed five species associated with C. djiboutiensis in Djibouti: two porcelain crabs, Polyonyx pedalis and Polyonyx socialis; one nudibranch, Tenellia chaetopterana; one fish, Onuxodon sp.; and one amphipod, Leucothoe sp. A. As only the fourth comprehensive study on Chaetopterus symbionts, our study highlights the diversity and community patterns of symbionts associated with these unique tubicolous marine polychaetes. Full article

India and Sri Lanka are known to exhibit high levels of biological diversity with many endemic taxa, such as the enigmatic scorpion genus Charmus Karsch, 1879. Members of this genus are rarely encountered in the field and are also known to be morphologically very similar, which impedes their systematic assessment. Our dedicated efforts towards sampling the members of the genus resulted in the collection of important material, which allowed us to carry out a thorough systematic revision of the genus using an integrated taxonomic approach. We propose several taxonomic changes based on the results of a detailed morphological study supported by molecular data. Charmus indicus Hirst, 1915 is synonymized with Charmus laneus Karsch, 1879, owing to the lack of morphological differences and low genetic divergence between the two taxa. We designate a neotype for Charmus sinhagadensis Tikader and Bastawade, 1983, and describe a new species from Sirumalai (Tamil Nadu, India). Moreover, we provide the first molecular phylogeny of Charmus based on Cytochrome c Oxidase subunit I (COI), 16S rRNA (16S) and 28S rRNA (28S) genes. The phylogenetic position of the genus within the family Buthidae C. L. Koch, 1837 is also tested using an independent genome-wide dataset (Ultraconserved Elements). Topological congruence and discrepancies between the phylogenies generated with Sanger sequences and the Ultraconserved Elements are commented on, and the reliability of these datasets when evaluating phylogenetic relationships at different hierarchical levels is further discussed. Full article

Background/Objectives: Obesity is a major health concern that can lead to various chronic diseases. Little is known about the anti-obesity effect of a standardized hot water extract from the stems of Ipomoea batatas (WIB). This study aimed to evaluate the therapeutic potential of WIB as a natural alternative to conventional anti-obesity treatments by assessing its effects on body weight, fat accumulation, and key metabolic biomarkers in a high-fat diet-induced obesity model. Methods: A high-fat diet (HFD) induced obesity in C57BL/6 mice. The mice were then treated orally with either orlistat (positive control) or WIB. Changes in body weight, food intake, and fat weight were measured, along with blood lipid profiles and adipokines. Western blot analyses were conducted to determine protein levels in each tissue. H&E staining in white adipose tissue and liver, and the gut microbiota composition were analyzed. Results: WIB treatment significantly reduced body weight and fat mass compared to the HFD group and demonstrated comparable effects to orlistat. WIB improved blood lipid profiles and adipokine levels. H&E staining revealed reduced fat accumulation in the white adipose tissue and liver. Also in those tissues, WIB restored expression levels of sterol regulatory element-binding protein-1 (SREBP-1) and CCAAT/enhancer-binding protein α (C/EBPα) and increased AMP-activated protein kinase (AMPK) phosphorylation. In brown adipose tissue, WIB enhanced AMPK phosphorylation and upregulated thermogenic-related proteins, including peroxisome proliferator-activated receptor-gamma coactivator-1α (PGC-1α), peroxisome proliferator-activated receptor α (PPARα), sirtuin 1 (SIRT1), uncoupling protein-1 (UCP-1), and cytochrome C oxidase subunit 4 (COX-IV). Analysis of gut microbiota revealed that WIB normalized β-diversity and reversed HFD-induced phyla imbalances (notably in Bacteroidetes, Firmicutes, and Proteobacteria). Conclusions: By reducing adiposity under the conditions tested in a murine model, improving metabolic markers, and favorably modulating gut microbiota, WIB demonstrates potential in mitigating obesity-related risks. These findings suggest that WIB may serve as a promising natural substance for the management of obesity. Further studies are warranted to confirm its efficacy and explore the potential underlying mechanisms in overweight or obese humans as a health supplement to help manage or prevent obesity. Full article

Species of the widespread Obsoletus Complex (Culicoides subgenus Avarita Fox, 1955) have been implicated as potential key vectors during the bluetongue and Schmallenberg epidemics in Central Europe in 2006 and 2012. Although extensive efforts have been made to clarify vector–pathogen relationships, one of the most important steps in this process—correct species identification—remains difficult, due to the presence of isomorphic species within the Obsoletus Group. To overcome the difficulties in morphological species identification, several PCR tests were developed. With the aim of developing a high-throughput PCR, capable of differentiating all putative vector species and newly described haplotypes of the subgenus Avaritia present in Europe, a dataset of 4407 published sequences of the mitochondrial (mt) cytochrome c oxidase subunit I (COI) was used to develop specific primers and probes, which can either be applied in a singleplex PCR or in different multiplex PCR approaches. The real-time PCR achieved very high diagnostic sensitivity (100%) and specificity (91.7%) and reliably detected the three clades of C. obsoletus sensu stricto (s.s.) in a pool of specimens. Thus, the new real-time PCR approach will provide an excellent tool for large-scale monitoring, which could improve the understanding of the biology, geographical distribution, and habitat preference of European biting midge species involved in the transmission of bluetongue, Schmallenberg, and epizootic hemorrhagic disease viruses. Full article

Nannochloropsis oceanica and Chlorococcum amblystomatis exhibit significant potential for protecting skin cells from oxidative stress-induced metabolic dysfunctions, owing to their high bioactive lipid content. This study aimed to evaluate their cytoprotective effects on the ultraviolet A (UVA)-perturbed proteome of 3D-cultured skin fibroblasts, using high-throughput proteomics. Chlorococcum amblystomatis lipid extract promoted a reduction in UVA-induced cytochrome c oxidase subunit 4 isoform 1 and cell death protein 6 levels, alongside the restoration of ferritin light chain expression diminished by UVA. It downregulated the expression of ubiquitin-conjugating enzyme E2 and lactoylglutathione lyase, which were upregulated by UVA. Furthermore, the elevated superoxide dismutase [Mn] mitochondrial levels in the caspase-1 interactome emphasized the lipid extract’s role in mitigating oxidative stress-associated chronic inflammation by regulating caspase-1 activity. In addition to this notable redox balance-regulating and cytoprotective activity, conversely, the protein inflammation signaling mediated by UVA was regulated in terms of wound healing potential in the case of Nannochloropsis oceanica lipid extract. Following UVA radiation, it promoted the upregulation of complement component B, thrombospondin-1, MMP1, and fibulin-1. The results revealed that both lipid extracts effectively reversed the UVA-perturbed proteomic profile of fibroblasts, highlighting their therapeutic potential in protecting the skin from UV radiation. Full article

Citruses are one of the major fruit crops globally. Among Mediterranean citrus producers, Sicily (southern Italy) is renowned for its high-quality fresh fruit production. Phytophthora diseases are a serious issue for citrus production worldwide and Phytophthora nicotianae is a prevalent causal agent of root rot in most citrus growing areas globally and particularly in the Mediterranean region. This study reports the occurrence of Phytophthora inundata as a root pathogen of declining mature citrus trees in eastern Sicily in association with P. nicotianae. This is the first record of P. inundata on citrus in Europe and the Mediterranean region. The species was identified on the basis of a morphology and multi-gene phylogenetic analysis, which included the internal transcribed spacer, β-tubulin and cytochrome c oxidase subunit 1. Pathogenicity tests on citrus saplings showed P. inundata was a less aggressive pathogen than P. nicotianae. However, the co-inoculation of both species produced more severe symptoms than inoculation with a single species, indicating an additive effect of these two pathogens and suggesting that opportunistic secondary pathogens like P. inundata may have a crucial role in complex diseases. Full article

Sargassum hemiphyllum var. chinense is a common brown seaweed along the southeastern coast of China, playing a significant ecological role and possessing considerable resource utilization value. However, its genetic diversity and phylogeographic patterns remain poorly understood. In this study, we employed multiple molecular markers, including the nuclear ITS sequence (ribosomal internal transcribed spacer), the plastid rbcL gene (encoding the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase), and the mitochondrial cox3 and cox1 genes (encoding cytochrome c oxidase subunits III and I, respectively), to elucidate the genetic and phylogeographic structure of S. hemiphyllum var. chinense. Our findings demonstrate that the combined use of plastid and mitochondrial gene sequences is suitable for phylogeographic studies of this species. Genetic structure difference was observed among 15 populations which localities covering most of its distribution range, likely resulting from colonization by ancestors of different origins and limited gene flow among populations. The study revealed two distinct lineages of S. hemiphyllum var. chinense, exhibiting a north–south geographical distribution with a mixed zone in the southern Fujian–eastern Guangdong coastal region. These lineages are inferred to have diverged during the Middle to Late Pleistocene due to the isolation of the East China Sea and South China Sea during glacial periods. Sub-lineage differentiation was also detected within the northern lineage. The southern lineage experienced demographic expansion following the end of the Last Glacial Maximum, while the northern lineage remained stable. The southern Fujian–eastern Guangdong region, characterized by high genetic diversity, may have served as a glacial refugium or a contact zone for the post-glacial recolonization of the two lineages. Global warming may lead to range contraction and reduced genetic diversity in this species. The high genetic diversity area should be prioritized for conservation efforts. Overall, these findings provide insights into the genetic structure status and causes of S. hemiphyllum var. chinense and offer a scientific basis for proposing reasonable measures for its resource management. Full article

Discogobio is a genus of small, economically important freshwater fishes that are widely distributed in Southwestern China. The species of the genus are morphologically very similar, which makes their taxonomic identification quite challenging. DNA barcoding technology can identify species at the molecular level, thus overcoming the limitations of morphological classification. In this study, we collected 16 morphological species of Discogobio from China, analyzed the mitochondrial cytochrome oxidase I subunit (COI) gene sequences of 206 samples, and applied DNA barcoding to identify the species. The COI amplicon was 651 bp in length, and the mean base contents were: (T) 28.83%, (C) 27.63%, (A) 25.97%, (G) 17.57%. The AT content (54.8%) was higher, and the base composition was biased. The intraspecific differences in the genus Discogobio were not significant, and the genetic distances were all less than 2%. The average interspecific genetic distances (3.94%) were about 18.8 times the average intraspecific genetic distances (0.21%), suggesting that there are barcode gaps among the species of the genus Discogobio. Five different species definition methods, Automatic Barcode Gap Discovery (ABGD), Assemble Species by Automatic Partitioning (ASAP), Bayesian Poisson Tree Process (bPTP), Generalized Mixed Yule Combination (GMYC), and Refined Single Linkage (RESL), were used to infer molecular operational taxonomic units (MOTU). The number of MOTUs ranged from 9 to 18. Phylogenetic analysis based on COI gene haplotypes showed that most species formed well-evolved branches on the phylogenetic tree, and the clustering among species was obvious without mixing. The results of this study provide reliable DNA barcoding information for species identification within the genus Discogobio, which is of great significance for taxonomic identification. Full article

Cymothoidae (Crustacea: Isopoda) infest fish in marine, brackish, and freshwater environments. Cymothoa pulchrum Lanchester, 1902 is a cymothoid commonly found in the buccal cavity of mainly Tetraodontiformes fishes, distributed in the central and western Indo-Pacific region. This study describes the morphology of each life cycle stage of C. pulchrum: adult female, transitional, adult male, juvenile, and manca. In addition, we obtained DNA sequences linked to the morphological information of this species. We compared it with the sequences in the database using the neighbor-joining tree based on cytochrome c oxidase subunit I (COI) and 16S rRNA. Prior to this study, morphological data on the immature stages of Japanese Cymothoa was limited to juveniles of Cymothoa indica Schioedte and Meinert, 1884. The research identified 12 distinct morphological features that differentiate juvenile C. pulchrum from juvenile C. indica. Molecular analysis revealed that the COI sequences obtained in this study matched some of the C. pulchrum sequences in the database, whereas other sequences in the database formed a clade with Cymothoa eremita (Brünnich, 1783). In the phylogenetic tree based on 16S rRNA, C. pulchrum was also divided into two groups. In the COI phylogenetic tree, C. pulchrum and C. eremita form a total of five groups, and these two species might need to be re-examined taxonomically and molecularly. Full article

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease caused by the degeneration of upper and lower motor neurons in the brain, brainstem and spinal cord. About 10% of familial ALS cases are linked to pathogenetic substitution in TARDBP, the gene encoding the TDP-43 protein. A novel rare causative variant in TARDBP (p.G376D) was recently reported in ALS patients. It leads to TDP-43 cytoplasmic mislocalization, increased oxidative stress and reduced cell viability. However, functional studies on the effects of this molecular defect have not yet been carried out. Mitochondria are highly dynamic organelles, and their deregulation has emerged as a key factor in many diseases, among which is ALS. Therefore, this study aimed at determining the impact of this causative variant on mitochondria. In cellular models expressing TDP-43^G376D and in fibroblasts derived from patients carrying this molecular defect, we observed alterations of mitochondrial functionality. We demonstrated increased localization of the mutated protein to mitochondria and a reduced abundance of subunits of complex I and complex II of the mitochondrial respiratory chain, associated with a decrease in mitochondrial membrane potential, in cellular respiration and in cytochrome C oxidase (COX) activity. Moreover, ALS cells showed increased mitochondrial fragmentation and reduced abundance of antioxidant enzymes causing increased oxidative stress. These results expand our knowledge about the molecular mechanisms underlying ALS pathogenesis associated with TDP-43 p.G376D and could help to identify new therapeutic strategies to counteract this disease. Full article

Jewel beetles of the genus Sternocera are widely distributed across tropical regions, including Thailand and Lao PDR, where the green-legged S. aequisignata Saunders, 1866, and red-legged S. ruficornis Saunders, 1866, are commonly found. These jewel beetles have significant economic importance, as they are edible, and their iridescent wings are used to create jewelry, leading to high market demand and intensive harvesting. Additionally, their habitats are being rapidly destroyed, resulting in population decline. However, genetic information on these species remains limited. This study aims to investigate the genetic diversity of S. aequisignata and S. ruficornis from various localities in Thailand and Lao PDR using mitochondrial cytochrome c oxidase subunit 1 (CO1) and 16S ribosomal DNA (16S rDNA) sequences. High genetic diversity was observed, with 45 and 62 CO1 haplotypes and 35 and 28 16S rDNA haplotypes identified in S. aequisignata and S. ruficornis populations, respectively. Haplotype network and phylogenetic analyses clearly distinguish S. aequisignata from S. ruficornis. Based on CO1 sequences, S. aequisignata was divided into three distinct haplogroups (GG1–GG3). Haplogroup GG1 was the most widespread, occurring in both Thailand and Lao PDR, while haplogroups GG2 and GG3 were restricted to some localities in northern, western, and northeastern Thailand, as well as Lao PDR. These findings suggest the presence of cryptic diversity within S. aequisignata, with at least three genetically distinct groups. Further comprehensive studies on the biology, ecology, and genetic diversity of these jewel beetles across their distribution range are essential to better understand their evolutionary dynamics. Full article

Biomonitoring and environmental impact assessment of marine ecosystems are important for the effective management of petroleum platform activity. Eukaryote biodiversity in water and sediment near petroleum platforms in the Gulf of Thailand was surveyed using environmental DNA (eDNA) based on 18S ribosomal DNA variable region 4 (18S rDNA-V4), the full-length 18S rDNA gene (18S rDNA-FL), and cytochrome c oxidase subunit 1 (COI). Water and sediment samples were collected from three platforms. The water sample was also collected from a reference site located farther south, away from the platforms. Both 18S rDNA markers outperformed COI. A total of 1144 and 889 species were found in water and sediment when analyzed by 18S rDNA-V4, and 519 species were found in sediment when analyzed by 18S rDNA-FL. Only 99 species were found in water samples when analyzed by COI. Alpha-diversity (Shannon and Simpson Evenness) indices were significantly different in water (p < 0.05), but not in sediment (p > 0.05). Beta-diversity (PCoA and NDMS) revealed significant species components between different petroleum platforms (p < 0.01). Species distribution revealed biological connectivity between eukaryotes from different platforms suggesting the importance of platforms on ecological impacts. This study also illustrates the possible application of eDNA for monitoring ecological toxicity around petroleum platforms. Full article

Some Pseudococcidae species interact with Coffea arabica’s roots and are associated with basidiomycete fungi. The fungal mycelium envelops the roots, which hinders their water and nutrient absorption. Combined with the feeding activity of the insects, this results in chlorosis, defoliation, and even plant death. Despite the significance of these interactions, they remain under-studied. To investigate the relationship between sporocarps found at the base of coffee trees, the cysts covering their roots, and the mealybug insects within them, samples of these three organisms—sporocarps, cysts, and mealybugs—were collected from 27 coffee plants across three farms in the departments of Norte de Santander and Quindío, Colombia. Fungi and cysts were identified by sequencing a nuclear gene region of the 28S large ribosomal subunit (28S rDNA) using the primers LSU200-F and LSU481-R. Fungal identification was further confirmed through classical taxonomy. Mealybugs were identified by sequencing a region of the mitochondrial gene Cytochrome C oxidase subunit I (COI) with CIF-CIR primers, corroborated through classical taxonomy. This study identified four fungal species associated with four species of Pseudococcidae. The fungus Phlebopus beniensis was associated with the mealybugs Pseudococcus elisae, Dysmicoccus neobrevipes, D. brevipes, and Pseudococcus nr. sociabilis. Phlebopus portentosus was linked to D. neobrevipes, while Xerophorus olivascens and Boletinellus rompelii were associated with other Pseudococcidae species. Additionally, the fungus Pseudolaccaria pachyphylla was found in coffee plants harboring mealybugs. These findings confirm the existence of specific associations between fungal species and mealybug insects that affect coffee plants. Full article