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18 pages, 2663 KiB  
Article
A Comprehensive Characterization of the Differences in Meat Quality, Nonvolatile and Volatile Flavor Substances Between Taoyuan Black and Duroc Pigs
by Hanjing Shi, Sisi Chen, Wenyue Zhou, Junfei Xu, Zekun Yang, Liu Guo, Qilong Li, Qiuping Guo, Yehui Duan, Jianzhong Li and Fengna Li
Foods 2025, 14(11), 1935; https://doi.org/10.3390/foods14111935 - 29 May 2025
Viewed by 185
Abstract
To compare the differences in meat quality between obese-type Chinese pig breeds and lean-type foreign pig breeds, we selected Taoyuan Black (TB) pigs and Duroc pigs at 180 and 210 days of age and analyzed their meat quality, chemical composition, and flavor compounds [...] Read more.
To compare the differences in meat quality between obese-type Chinese pig breeds and lean-type foreign pig breeds, we selected Taoyuan Black (TB) pigs and Duroc pigs at 180 and 210 days of age and analyzed their meat quality, chemical composition, and flavor compounds using an electronic tongue, chromatographic techniques, and two-dimensional gas chromatography-time-of-flight-mass-spectrometry (GC×GC-TOF-MS). A total of 16 main fatty acids, 18 main free amino acids, and 249 flavor compounds were identified. The results showed that TB pigs exhibited redder meat color, higher intramuscular fat, and lower shear force than Duroc pigs (p < 0.05). TB pigs displayed higher levels of flavor nucleotides, free amino acids, and monounsaturated fatty acids (p < 0.05). Furthermore, pigs at 180 days exhibited lower dripping loss and more flavor compounds than those at 210 days (p < 0.05). Electronic tongue analysis revealed higher umami values in TB pigs at 180 days of age. Among the flavor compounds in pork, the four compounds that contributed most significantly to flavor across all species were 2-nonenal, 2-octenal, heptanal, 2,3-butanedione, and 2-pentylfuran. These findings provide fundamental data and insight into pig production. Full article
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19 pages, 3772 KiB  
Article
Fermentation Preparation of Umami Sauce and Peptides from Kelp Scraps by Natural Microbial Flora
by Jizi Huang, Ruimei Wu, Yijing Wu, Feiyang Liang, Yiming Chen, Fujia Yang, Huawei Zheng, Zonghua Wang, Huibin Xu, Songbiao Chen and Guangshan Yao
Foods 2025, 14(10), 1751; https://doi.org/10.3390/foods14101751 - 15 May 2025
Viewed by 246
Abstract
Kelp (Laminaria japonica) is renowned for its rich content of flavor-enhancing amino acids and nucleotides; however, approximately 40% of kelp, including the thin edges and root areas, is discarded during its processing due to its inferior taste. To recycle these kelp [...] Read more.
Kelp (Laminaria japonica) is renowned for its rich content of flavor-enhancing amino acids and nucleotides; however, approximately 40% of kelp, including the thin edges and root areas, is discarded during its processing due to its inferior taste. To recycle these kelp byproducts, we have cultivated a functional microbial consortium through continuous enrichment. Analysis via 16S rRNA sequencing has shown that during the three fed-batch fermentation stages of kelp waste, the microbial community was predominantly and consistently composed of three phyla: Halanaerobiaeota, Bacteroidota, and Proteobacteria. At the genus level, Halanaerobium emerged as the dominant player, exhibiting a trend of initial increase followed by a decline throughout the fermentation process. Enzymes such as alginate lyases and both acidic and neutral proteases were found to play crucial roles in the degradation of kelp residues into sauces. Notably, electronic tongue analysis revealed that the fermented kelp sauce demonstrated strong umami characteristics. Furthermore, four novel umami peptides, EIL, STEV, GEEE, and SMEAVEA, from kelp were identified for the first time, with their umami effect largely attributed to strong hydrogen bond interactions with the T1R1–T1R3 umami receptors. In conclusion, this study proposed a sustainable method for kelp by-product utilization, with implications for other seaweed processing. Full article
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17 pages, 3472 KiB  
Article
Identification of Characteristic Flavor Compounds and Quality Evaluation of Butyriboletus roseoflavus from Different Regions in Yunnan
by Ling Song, Qiming Zhao, Xuebin Shao, Xiangqian Lv, Juan Lu, Ruiping Luo, Yurong Liu, Xing Zhou, Qiang Li and Mingying Gui
Foods 2025, 14(10), 1676; https://doi.org/10.3390/foods14101676 - 9 May 2025
Viewed by 293
Abstract
Butyriboletus roseoflavus is a rare wild edible mushroom. Yet, the relationship between its chemical composition and quality, as well as the influence of geographic origin on its flavor profile, remains unclear. In this study, ultra-performance liquid chromatography–tandem mass spectrometry (UPLC-MS/MS) and headspace solid-phase [...] Read more.
Butyriboletus roseoflavus is a rare wild edible mushroom. Yet, the relationship between its chemical composition and quality, as well as the influence of geographic origin on its flavor profile, remains unclear. In this study, ultra-performance liquid chromatography–tandem mass spectrometry (UPLC-MS/MS) and headspace solid-phase microextraction coupled with gas chromatography–mass spectrometry (HS-SPME-GC-MS) were used to investigate flavor differences and influencing factors among samples from different regions. Seventeen key volatile compounds (OAV > 1) were identified, with α-pinene, styrene, octanal, 1,3,5-trithiane, and 2,4-undecadienal being the primary aroma contributors. Six characteristic taste-active compounds (TAV > 1) were detected, among which Glu, Ala, and His played dominant roles. Differential metabolites were mainly enriched in nucleotides and their derivatives, suggesting their importance in environmental adaptation and quality formation. Correlation analysis revealed that the abundance of key metabolites was closely related to geographic origin: temperature, humidity, light intensity, and CO2 concentration mainly influenced aroma variation, while taste differences were associated with soil electrical conductivity and microclimatic changes mediated by altitude. These findings provide a comprehensive understanding of the flavor characteristics of B. roseoflavus and offer a theoretical basis for its future processing and utilization. Full article
(This article belongs to the Section Food Quality and Safety)
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17 pages, 16309 KiB  
Article
Microbial Community Succession and Flavor Compound Formation in Sesame-Flavored Baijiu from Zaopei
by Wuyang Liu, Hao Zhou, Jing Cai, Shanshan Xu, Anyuan Chen, Dongdong Mu, Xuefeng Wu and Xingjiang Li
Fermentation 2025, 11(5), 255; https://doi.org/10.3390/fermentation11050255 - 3 May 2025
Viewed by 312
Abstract
The succession of microbial communities during the fermentation process in sesame-flavored Baijiu cellars profoundly influences the flavor profile of the liquor. However, the key factors driving microbial succession in these cellars remain unclear. This study focuses on the fermentation process of sesame-flavored Baijiu [...] Read more.
The succession of microbial communities during the fermentation process in sesame-flavored Baijiu cellars profoundly influences the flavor profile of the liquor. However, the key factors driving microbial succession in these cellars remain unclear. This study focuses on the fermentation process of sesame-flavored Baijiu Zaopei in traditional Tongcheng cellars. Samples were collected from the surface, middle, and bottom of the cellar, categorized by fermentation time. Various techniques were employed to analyze the physicochemical properties (including moisture, ethanol, total acid, starch, and reducing sugars), flavor compounds (volatile substances and amino acids), and microbial communities (bacteria and fungi) of the Zaopei during fermentation. A total of 68 flavor compounds were detected, with 16 key flavor compounds and 16 amino acids identified. Microbiologically, the Lactobacillus genus dominated in the later stages of fermentation, while the Issatchenkia species were the predominant fungi. Correlation analysis indicated that environmental factors play a significant role in driving microbial community succession. Acetobacter, Staphylococcus, Pichia, Bacillus, and Kroppenstedtia species may contribute to the synthesis of key flavor compounds. The relative contents of acetic acid, 2-phenylethyl ester, and Benzenepropanoic acid ethyl ester were influenced by multiple microbial groups, suggesting a synergistic fermentation effect. PICRUSt2 predictions revealed significant differences in 41 KEGG pathways at level 2 and 293 pathways at level 3 across different fermentation intervals. These pathways are primarily associated with amino acid, ester, and nucleotide metabolism, as well as bacterial transcription, translation, and signal transduction. This research provides a theoretical foundation for understanding the fermentation mechanisms of sesame-flavored Baijiu. Full article
(This article belongs to the Special Issue Applied Microorganisms and Industrial/Food Enzymes, 2nd Edition)
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17 pages, 3163 KiB  
Article
Bacillus multifaciens sp. nov., a Crucial and Highly-Active Flavor and Protease Producer Isolated from the qu-Starter of Chinese Wuliangye Baijiu
by Qingchun Luo, Xinrui Zhao, Xi Li, Yuzhu Li, Pengju Zhao, Yanping Lu, Duotao Liu, Jian Su, Jian Chen, Dong Zhao, Jianghua Li and Jia Zheng
Microorganisms 2025, 13(5), 993; https://doi.org/10.3390/microorganisms13050993 - 25 Apr 2025
Viewed by 266
Abstract
In the study presented herein, an aerobic, Gram-stain-positive, spore-forming bacterium, designated as WLY-B-L8T, was isolated from a qu-starter (baobaoqu) cultivation facility used for the production of Wuliangye baijiu in Yibin city (Sichuan province, China). The strain comprised short, [...] Read more.
In the study presented herein, an aerobic, Gram-stain-positive, spore-forming bacterium, designated as WLY-B-L8T, was isolated from a qu-starter (baobaoqu) cultivation facility used for the production of Wuliangye baijiu in Yibin city (Sichuan province, China). The strain comprised short, rod-shape cells of 1.2–1.9 μm in width and 1.7–4.8 μm in length, arranged singly or in pairs. The isolate was able to grow at temperatures of 20–42 °C (optimum growth at 40 °C), pH 5.0–10.0 (optimum growth at pH 8.0), and in the presence of 0–2% (w/v) NaCl (optimum growth with 1% NaCl). Ribose, xylose, arabinose, mannose, glucose, and galactose constituted the major cell-wall sugars. Moreover, meso-diaminopimelic acid (meso-DAP) constituted the diagnostic amino acid. The main polar lipids of WLY-B-L8T included diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), unidentified aminolipids (UAL 1–2), an unidentified aminophospholipid (UAPL), an unidentified aminoglycolipid (UAGL), and an unidentified lipid (UL). MK-7 was the predominant menaquinone and iso-C15:0 (23.00%) was the major fatty acid. Comparisons of the 16S rRNA gene sequence indicated that WLY-B-L8T was most closely related to Bacillus rhizoplanae JJ-63 DSM 12442T (98.71%), Bacillus pseudomycoides DSM 12442T (98.21%), and Bacillus cytotoxicus NVH 391–98T (98.14%). The average nucleotide identity (ANI) values of strain WLY-B-L8T and the three type strains mentioned above were 88.24%, 80.57%, and 78.70%. The average amino identity (AAI) values between them were 89.84%, 79.51%, and 80.41%. In addition, the digital DNA–DNA hybridization (dDDH) values between them were 36.70%, 26.10%, and 23.90%. The genomic DNA G+C content was 35.97%. Based on the evidence presented herein, WLY-B-L8T (CICC 25210T = JCM 36284T) exhibits promise as the type strain of a novel species, designated as Bacillus multifaciens sp. nov., that can produce protease (119.38 ± 7.44 U/mL) and volatile flavor components when cultured on raw wheat, such as 2-pipendinone (21.95 ± 1.56 mg/L), phenylethyl alcohol (19.08 ± 0.82 mg/L), hydrocinnamic acid (18.60 ± 0.53 mg/L), and acetoin (7.58 ± 0.11 mg/L). Full article
(This article belongs to the Section Food Microbiology)
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18 pages, 2019 KiB  
Article
Comprehensive Insights of Biochemical and Sensory Characterization in Takifugu obscurus by Environmental Modulation
by Siman Li, Xuanyun Huang, Changling Fang, Yongfu Shi, Xiaoyi Lou, Dongmei Huang and Yunyu Tang
Foods 2025, 14(8), 1386; https://doi.org/10.3390/foods14081386 - 17 Apr 2025
Viewed by 291
Abstract
This study systematically deciphers a comprehensive analysis of biochemical and sensory variations in Takifugu obscurus, evaluating the seasonal dynamics, salinity gradients (0 and 3‰), and nutritional regimes on quality determinants in aquaculture. To the best of our knowledge, the mechanistic links between [...] Read more.
This study systematically deciphers a comprehensive analysis of biochemical and sensory variations in Takifugu obscurus, evaluating the seasonal dynamics, salinity gradients (0 and 3‰), and nutritional regimes on quality determinants in aquaculture. To the best of our knowledge, the mechanistic links between cultivation factors and organoleptic quality were first established through integrative biochemical profiling, including proximate composition, free amino acids, taste-active nucleotides, and mineral ions, coupled with quantitative sensory evaluation. The results revealed that spring samples exhibit 44.7% higher inosine monophosphate than that of autumn and 92.8% elevated ATP, correlating with superior umami-kokumi attributes. Salinity adaptation drove metabolic trade-offs: freshwater cultivation amplified flavor-enhancing amino acids, while brackish systems prioritized ionic precision. Short-term fasting induced alanine accumulation without sensory compromise, demonstrating nutritional plasticity. Polyculture compatibility was evidenced by negligible quality divergence from monoculture, despite enhanced productivity. These insights advance sustainable aquaculture through science-driven strategies that harmonize ecological resilience, economic viability, and culinary excellence in commercial Takifugu obscurus production. Full article
(This article belongs to the Special Issue Aquatic Products Processing and Preservation Technology)
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14 pages, 4438 KiB  
Article
Immobilization Techniques for Food-Grade Nuclease P1 and Their Application in Nucleotide Production
by Xiao-Yan Yin, Wei-Zhong He, Yingkun Sheng and Zhong-Hua Yang
Foods 2025, 14(4), 612; https://doi.org/10.3390/foods14040612 - 12 Feb 2025
Viewed by 677
Abstract
Nuclease P1 (NP1) is critical for producing 5′-nucleotides, which are essential flavor enhancers in the food industry. Traditional use of free NP1 is hampered by poor reusability, high costs, and potential residual enzyme protein contamination, compromising product quality. This study introduces a novel [...] Read more.
Nuclease P1 (NP1) is critical for producing 5′-nucleotides, which are essential flavor enhancers in the food industry. Traditional use of free NP1 is hampered by poor reusability, high costs, and potential residual enzyme protein contamination, compromising product quality. This study introduces a novel immobilization technique using a cross-linking approach with food-grade ion exchange resin AER1 to create NP1@AER1-GA. This method achieves an enzyme activity of 51,015 U/g, with a notable immobilization yield of 67.7%. The immobilized NP1@AER1-GA exhibits significantly enhanced stability and catalytic efficiency while ensuring industrial compatibility and maintaining stringent safety standards. Under optimized conditions, NP1@AER1-GA demonstrates exceptional performance in 5′-nucleotide production, retaining approximately 85% of its initial activity after 10 cycles of reuse. This breakthrough not only boosts the efficiency and sustainability of nucleotide synthesis but also offers a scalable solution for industrial applications, promoting sustainable manufacturing practices within the food industry. By addressing key challenges associated with traditional enzymatic methods, this immobilization technique sets a new benchmark for biocatalyst design in the food processing industry. Full article
(This article belongs to the Special Issue Food Grade Immobilisation Systems for Enzymes)
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18 pages, 2986 KiB  
Article
Muscle Characteristics Comparison Analysis Reveal Differences in the Meat Quality and Nutritional Components of Three Shanghai Local Pig Breeds
by Weilong Tu, Hongyang Wang, Yingying Zhang, Wei Jiang, Chuan He, Ji Huang, Lan Bai, Yuduan Diao, Jieke Zhou, Yongsong Tan and Xiao Wu
Foods 2025, 14(4), 569; https://doi.org/10.3390/foods14040569 - 8 Feb 2025
Cited by 1 | Viewed by 1082
Abstract
To study the differences in meat quality and nutritional components between the local Shanghai pig breeds Meishan pig (MS), Shawutou pig (SWT), Fengjing pig (FJ), and the commercial Duroc × Landrace × Yorkshire (DLY) crossbred pigs, and to provide data support for the [...] Read more.
To study the differences in meat quality and nutritional components between the local Shanghai pig breeds Meishan pig (MS), Shawutou pig (SWT), Fengjing pig (FJ), and the commercial Duroc × Landrace × Yorkshire (DLY) crossbred pigs, and to provide data support for the selection and breeding of superior pig breeds, this study selected 30 piglets each of three local pig breeds and DLY with similar birth ages and weights around 25 kg, fed them the same daily ration with uniform nutritional components, and slaughtered ten of them at around 100 kg weight for evaluation of differences in meat quality indicators (primarily intramuscular fat content, tenderness value, texture, etc.) and amino acid content among the varieties. The results indicated significant differences among the four pig breeds in intramuscular fat content, with MS having the highest content and significant differences in tenderness value compared to the other three breeds (p < 0.05). In terms of texture indicators, MS and SWT differed significantly from FJ and DLY in terms of hardness and fracturability indicators (p < 0.05), with certain differences existing among the four breeds in other indicators. In amino acid content, the differences in total amino acid content among the three Shanghai local pig breeds were not significant (p > 0.05), but all were significantly higher than DLY. Further analysis revealed significant differences in amino acid content between Shanghai local pig breeds and DLY, with Shanghai local pigs showing markedly higher levels of serine, proline, isoleucine, leucine, and histidine compared to DLY (p < 0.05). Regarding nucleotides, the cytidine monophosphate (CMP) indicator of MS differed significantly from the other three breeds (p < 0.05), SWT’s uridine monophosphate (UMP) indicator differed significantly from FJ and DLY, and FJ and DLY’s inosine monophosphate (IMP) indicator was significantly higher than MS and SWT (p < 0.05), while SWT’s adenosine monophosphate (AMP) indicator was significantly higher than the other three breeds (p < 0.05). The results of this study suggest that the meat quality and nutritional composition of Shanghai local pigs are significantly superior to DLY, with MS exhibiting significantly better meat quality and nutrition compared to SWT and FJ among the three local pig breeds. Full article
(This article belongs to the Special Issue Meat Quality, Sensory and Consumer Preferences and Attitudes)
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26 pages, 1778 KiB  
Article
Combining Sensory Analysis and Flavoromics to Determine How the Maillard Reaction Affects the Flavors of Golden Pomfret Hydrolysates
by Zhengsen Long, Xiangzhou Yi, Xia Gao, Yanchen Wang, Jingfeng Guo, Shuxin Gao, Guanghua Xia and Xuanri Shen
Foods 2025, 14(4), 560; https://doi.org/10.3390/foods14040560 - 8 Feb 2025
Viewed by 917
Abstract
Enzymatic hydrolysis can enhance the flavor of aquatic products. Nevertheless, the strong fishy odor restricts its utilization in culinary applications. This study is centered on enhancing the flavor of golden pomfret samples by promoting the Maillard reaction (MR) between golden pomfret hydrolysate (GHES) [...] Read more.
Enzymatic hydrolysis can enhance the flavor of aquatic products. Nevertheless, the strong fishy odor restricts its utilization in culinary applications. This study is centered on enhancing the flavor of golden pomfret samples by promoting the Maillard reaction (MR) between golden pomfret hydrolysate (GHES) and reducing sugars. The research results demonstrate that the Maillard reaction significantly improves the sensory characteristics of GHES. It prompts the formation of diverse volatile compounds, such as aldehydes, esters, and furans. Simultaneously, it reduces the relative amounts of substances associated with fishy odor, such as 1-Octen-3-ol and Hexanal. Moreover, the Maillard reaction increases the contents of amino acids contributing to umami and sweetness, as well as 5′-nucleotides in the samples, thus enriching their umami flavor profiles. After undergoing the Maillard reaction treatment, the antioxidant capacity of the samples is also significantly enhanced (p < 0.05). This research highlights the potential of the Maillard reaction in improving both the flavor and antioxidant properties of GHES, establishing a theoretical basis for elevating the quality of golden pomfret products. Full article
(This article belongs to the Section Food Physics and (Bio)Chemistry)
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18 pages, 3829 KiB  
Article
Integration of GWAS and Co-Expression Network Analysis Identified Main Genes Responsible for Nitrogen Uptake Traits in Seedling Waxy Corn
by Chunmei Luo, Huixue Dai, Shuaiqiang Liang, Han Zhao and Ling Zhou
Genes 2025, 16(2), 126; https://doi.org/10.3390/genes16020126 - 23 Jan 2025
Viewed by 808
Abstract
Background/Objectives: Waxy corn has a unique taste and flavor that a majority of consumers love, and the market application prospect is broad. Nitrogen plays an important role in the growth and development of waxy corn. Exploring the key genes that affect nitrogen absorption [...] Read more.
Background/Objectives: Waxy corn has a unique taste and flavor that a majority of consumers love, and the market application prospect is broad. Nitrogen plays an important role in the growth and development of waxy corn. Exploring the key genes that affect nitrogen absorption can lay a foundation for improving the quality of waxy corn. Methods: In this study, a total of 534 local waxy corn inbred lines were used to perform genome-wide association studies (GWAS) to mine the significant Quantitative Trait Nucleotides (QTNs) for nitrogen content of waxy corn at seedling stage in two different environments. The Weighted Gene Co-Expression Network Analysis (WGCNA) nitrogen response co-expression network was also constructed to explore the differences of gene expression patterns and the co-expression relationship between transcription factors and functional genes to find candidate genes significantly associated with nitrogen uptake in waxy corn. Results: A total of 97 significant associations (LOD-value ≥ 3) were detected between SNPs and nitrate content traits under single and multi-environment conditions. Fifty-four candidate genes were identified around the significant SNPs in about a 20 Kb region. Combined with nitrogen response differential co-expression network analysis, 17 out of the 54 candidate genes were identified in the nitrogen response module, among which 4 main genes (Zm00001d029012, Zm00001d034035, Zm00001d007890, and Zm00001d045097) were repeatedly detected in multiple environments. Conclusions: This study jointly identified four stable and heritable candidate genes involved in the nitrogen metabolism process through GWAS and co-expression network analysis. The results of this study provide theoretical guidance for further elucidating the genetic mechanism of nitrogen efficiency in waxy corn and breeding new germplasm of waxy corn. Full article
(This article belongs to the Section Bioinformatics)
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17 pages, 7718 KiB  
Article
Effect of Geographic Regions on the Flavor Quality and Non-Volatile Compounds of Chinese Matcha
by Hongchun Cui, Yun Zhao, Hongli Li, Min Ye, Jizhong Yu and Jianyong Zhang
Foods 2025, 14(1), 97; https://doi.org/10.3390/foods14010097 - 2 Jan 2025
Cited by 2 | Viewed by 1189
Abstract
Matcha is a very popular tea food around the world, being widely used in the food, beverage, health food, and cosmetic industries, among others. At present, matcha shade covering methods, matcha superfine powder processing technology, and digital evaluations of matcha flavor quality are [...] Read more.
Matcha is a very popular tea food around the world, being widely used in the food, beverage, health food, and cosmetic industries, among others. At present, matcha shade covering methods, matcha superfine powder processing technology, and digital evaluations of matcha flavor quality are receiving research attention. However, research on the differences in flavor and quality characteristics of matcha from the same tea tree variety from different typical regions in China is relatively weak and urgently required. Taking Japan Shizuoka matcha (R) as a reference, the differences in sensory quality characteristics and non-volatile substances of matcha processed with the same tea variety from different regions in China were analyzed. The samples were China Hangzhou matcha (Z1), China Wuyi matcha (Z2), China Enshi matcha (H), and China Tongren matcha (G), which represent the typical matcha of eastern, central, and western China. A total of 1131 differential metabolites were identified in the matcha samples, comprising 118 flavonoids, 14 tannins, 365 organic acids, 42 phenolic acids, 22 alkaloids, 39 saccharides, 208 amino acids and derivatives, 17 lignans and coumarins, seven quinones, 44 nucleotides and derivatives, 14 glycerophospholipids, two glycolipids, 15 alcohols and amines, 140 benzenes and substituted derivatives, 38 terpenoids, 30 heterocyclic compounds, and 15 lipids. Kaempferol-7-O-rhamnoside, 3,7-Di-O-methylquercetin, epigallocatechin gallate, epicatechin gallate, and epigallocatechin were detected in Z1, Z2, H, and G. A total of 1243 metabolites differed among Z1, Z2, and R. A total of 1617 metabolites differed among G, H, and R. The content of non-volatile difference metabolites of Z2 was higher than that of Z1. The content of non-volatile difference metabolites of G was higher than that of H. The 20 key differential non-volatile metabolites of Z1, Z2, G, and H were screened out separately. The types of non-volatile flavor differential metabolites of G and H were more numerous than those of Z1 and Z2. The metabolic pathways, biosynthesis of secondary metabolites, biosynthesis of co-factors, flavonoid biosynthesis, biosynthesis of amino acids, biosynthesis of various plant secondary metabolites, and purine metabolism of metabolic pathways were the main KEGG pathways. This study provides new insights into the differences in metabolite profiles among typical Chinese matcha geographic regions with the same tea variety. Full article
(This article belongs to the Special Issue Tea: Processing Techniques, Flavor Chemistry and Health Benefits)
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17 pages, 2688 KiB  
Article
Exploring the Diversity and Ancestry of Fine-Aroma Cacao from Tumaco, Colombia
by Paola Delgadillo-Duran, Jhon A. Berdugo-Cely, Julián Mejía-Salazar, José Ives Pérez-Zúñiga and Roxana Yockteng
Diversity 2024, 16(12), 754; https://doi.org/10.3390/d16120754 - 12 Dec 2024
Viewed by 1207
Abstract
The cacao plant, Theobroma cacao, is economically significant, as its beans are essential for chocolate production. Cacao from Tumaco on Colombia’s Pacific coast is renowned for its distinct flavor and aroma, accessing specialty markets. However, production challenges include low yields, inconsistent post-harvest [...] Read more.
The cacao plant, Theobroma cacao, is economically significant, as its beans are essential for chocolate production. Cacao from Tumaco on Colombia’s Pacific coast is renowned for its distinct flavor and aroma, accessing specialty markets. However, production challenges include low yields, inconsistent post-harvest practices, and limited knowledge of local genotypes. To tackle these issues, a research project genetically characterized 25 Tumaco landraces, establishing their phylogenetic relationships using reduced representation libraries (RRL). The analysis yielded 359,950 single nucleotide polymorphisms (SNPs) for Tumaco and identified 38,812 SNPs in common with Colombian National Germplasm Bank genotypes and reference groups. Genetic structure analysis divided Tumaco samples into nine populations, revealing admixtures primarily from the Nacional, Iquitos, Amelonado, and Criollo groups. Some Tumaco samples showed predominant ancestry from the Iquitos group, while others leaned towards the Nacional type, with limited Criollo and Contamana ancestry. No Tumaco landrace exhibited complete ancestry from a single group, suggesting a hybrid origin. These insights into Tumaco’s genetic diversity and structure are essential for improving landraces in Colombia’s Pacific region, contributing to the genetic enhancement of cacao. Full article
(This article belongs to the Section Plant Diversity)
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9 pages, 2152 KiB  
Article
Widely Targeted Metabolomics Revealed the Metabolic Basis of Physiological Function and Flavor of Natto
by Xiaolong Yin, Xiaona Wang, Lili Xu, Jianzhi Zhao, Can Li and Jianqiang Lin
Metabolites 2024, 14(12), 663; https://doi.org/10.3390/metabo14120663 - 1 Dec 2024
Viewed by 1123
Abstract
Background: Natto is a fermented product derived from soybeans through the action of Bacillus subtilis natto, possessing various pharmacological and health-promoting properties. However, due to the absence of large-scale and systematic investigations into its metabolite profile, the mechanisms governing the biological functions and [...] Read more.
Background: Natto is a fermented product derived from soybeans through the action of Bacillus subtilis natto, possessing various pharmacological and health-promoting properties. However, due to the absence of large-scale and systematic investigations into its metabolite profile, the mechanisms governing the biological functions and flavor characteristics of natto remain incompletely elucidated. Methods: In this study, a comprehensive, widely targeted metabolome analysis was conducted using UHPLC-MS/MS to compare soybeans and natto. Results: A total of 569 metabolites were identified, of which 160 exhibited differential expression between natto and soybeans, including 28 amino acids and their derivatives, 19 flavonoids, 18 alkaloids, and 10 nucleotides and their derivatives. Pathway enrichment analysis further demonstrated significant differences in the metabolic pathways between natto and soybeans, with these 160 differentially expressed metabolites primarily distributed across 40 metabolic pathways. KEGG pathway enrichment analysis of natto metabolites revealed that the majority of these mapped to three key metabolic pathways. Variations in the content of flavonoids and alkaloids, as well as changes in amino acid and saccharide composition and abundance, were found to collectively contribute to the distinctive flavor and biological functionality of natto. Conclusions: This study lays the foundation for future efforts to enhance the quality of natto. Full article
(This article belongs to the Section Plant Metabolism)
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14 pages, 1875 KiB  
Article
Effects of Heat Stress on the Muscle Meat Quality of Rainbow Trout
by Yalan Li, Changqing Zhou, Yong Zhang and Xingxu Zhao
Fishes 2024, 9(11), 459; https://doi.org/10.3390/fishes9110459 - 11 Nov 2024
Cited by 2 | Viewed by 1457
Abstract
The effects of heat stress on aquatic animals are increasingly being discerned, but little is known about the effects of heat stress on muscle meat quality or the flavor of muscle. This study aimed to evaluate the effects of heat stress on the [...] Read more.
The effects of heat stress on aquatic animals are increasingly being discerned, but little is known about the effects of heat stress on muscle meat quality or the flavor of muscle. This study aimed to evaluate the effects of heat stress on the muscle antioxidant properties, structural and physical properties (e.g., pH, muscle color, shear force, and expressible moisture), chemical composition (e.g., nucleotides, organic acids, amino acids, and minerals), and volatile substances of rainbow trout. We observed that the antioxidant capacity of muscle decreased after stress experiments at 22.5 °C for 24 h. The content of inflammatory factors notably increased (p < 0.05), the pH value and red value of muscle decreased (p < 0.05), the interfiber space increased, and several muscle fibers were broken. Heat stress changed the contents of nucleotides, organic acids, minerals, and amino acids in muscle. The contents of IMP and AMP, which play an important role in the flavor of muscle, decreased (p < 0.05). The contents of two amino acids that provide a sweet taste decreased; those of five amino acids that provide a bitter taste increased (p < 0.05). Heat stress also affected the amount and type of volatile substances in muscle, which affected muscle odor. These results suggest that heat stress may exert adverse effects on the oxidative stability, structure, meat quality, and flavor of muscle, requiring attention and prevention. Full article
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19 pages, 5413 KiB  
Article
Genetic Diversity and Genome-Wide Association Study of Pleurotus pulmonarius Germplasm
by Qian Li, Xuebing Ying, Yashu Yang and Wei Gao
Agriculture 2024, 14(11), 2023; https://doi.org/10.3390/agriculture14112023 - 11 Nov 2024
Viewed by 1096
Abstract
Pleurotus pulmonarius is prized by consumers for its distinct flavor, strong aroma, and dense, crispy texture. Although China has extensive germplasm resources for P. pulmonarius, only a limited number of cultivars are commercially available. A comprehensive evaluation and detailed analysis of P. [...] Read more.
Pleurotus pulmonarius is prized by consumers for its distinct flavor, strong aroma, and dense, crispy texture. Although China has extensive germplasm resources for P. pulmonarius, only a limited number of cultivars are commercially available. A comprehensive evaluation and detailed analysis of P. pulmonarius germplasm, alongside the exploration of superior germplasm resources, are essential for developing new varieties. In this study, we resequenced the genomes of 47 P. pulmonarius strains collected nationwide, identifying a total of 4,430,948 single nucleotide polymorphism (SNP) loci. After filtering based on minor allele frequency and data integrity, 181,731 high-quality SNP markers were retained. Phylogenetic analysis grouped the strains into six clusters, with strains from similar geographical regions clustering together. Most CBS strains formed a single cluster; cultivated varieties exhibited higher genetic similarity, whereas wild strains displayed greater diversity. Principal component analysis (PCA) and population structure analyses, using the same SNP markers, corroborated the phylogenetic findings. DNA fingerprinting, derived from 369 core SNPs, further underscored the genetic diversity among strains. Significant morphological variation was observed, with strains in groups ZP, CBS, and WHLJ exhibiting notably higher yields and cap widths compared to other groups. Correlation analysis revealed associations among various phenotypes, while genome-wide association study (GWAS) identified multiple SNP markers within candidate genes linked to agronomic traits, most of which were controlled by multiple genes. This research offers a molecular-level characterization and evaluation of P. pulmonarius germplasm resources, providing a scientific basis for enriching available germplasm and advancing breeding materials. Full article
(This article belongs to the Special Issue Genetics and Breeding of Edible Mushroom)
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