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19 pages, 466 KB  
Article
Servant Leadership for Sustainability: A Serial Mediation Model of Empowerment, Creativity, and Pro-Environmental Behavior
by Farida Saleem and Sofia Mateou
Adm. Sci. 2025, 15(10), 380; https://doi.org/10.3390/admsci15100380 (registering DOI) - 28 Sep 2025
Abstract
This study examines the impact of Environmentally Specific Servant Leadership (ESSL) on employees’ pro-environmental behavior (PEB) by proposing a serial mediation model that incorporates green psychological empowerment and green creativity as central mechanisms. Guided by social exchange theory (SET), survey data from managers [...] Read more.
This study examines the impact of Environmentally Specific Servant Leadership (ESSL) on employees’ pro-environmental behavior (PEB) by proposing a serial mediation model that incorporates green psychological empowerment and green creativity as central mechanisms. Guided by social exchange theory (SET), survey data from managers in Saudi Arabia were analyzed using PROCESS Model 6 with bootstrapping to test direct, indirect, and serial mediation effects. The results show that ESSL has a significant positive influence on PEB, with both psychological empowerment and green creativity acting as partial mediators. Moreover, the serial mediation analysis confirms that empowerment enhances creativity, which in turn drives employees’ pro-environmental actions. The findings support the social exchange theory, SET, in the contextual environmental settings of the rapidly developing economy of Saudi Arabia. These findings highlight the critical role of psychological empowerment and creativity in translating leadership values into sustainable behaviors. Practically, the study suggests that organizations can advance sustainability goals by fostering servant leadership practices, empowering employees with autonomy and resources, and encouraging innovative solutions for environmental challenges. Within the context of Saudi Vision 2030, the findings provide valuable insights for aligning leadership development with national sustainability objectives. Full article
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12 pages, 865 KB  
Article
Genetic and Clinical Insights into ALS/FTD: Profiling a Rare Cohort to Explore Spectrum Heterogeneity
by Ana Marjanovic, Elka Stefanova, Vanja Viric, Aleksa Palibrk, Gorana Mandić Stojmenović, Tanja Stojković, Lenka Stojadinovic, Ivana Basta, Ivana Novakovic, Zorica Stević and Milena Jankovic
J. Pers. Med. 2025, 15(10), 451; https://doi.org/10.3390/jpm15100451 (registering DOI) - 28 Sep 2025
Abstract
Background: Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) are recognized as a spectrum of neurodegenerative disorders with overlapping clinical, pathological, and genetic features. The identification of C9orf72 hexanucleotide repeat expansion as the most common genetic cause of both conditions has prompted [...] Read more.
Background: Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) are recognized as a spectrum of neurodegenerative disorders with overlapping clinical, pathological, and genetic features. The identification of C9orf72 hexanucleotide repeat expansion as the most common genetic cause of both conditions has prompted further investigation of genetic modifiers that may contribute to disease heterogeneity. We aimed to analyze the frequency of C9orf72 repeat expansions and potential modifying roles of APOE, ATXN1, and ATXN2 in Serbian ALS/FTD patients. Methods: Our study included an ALS/FTD cohort (n = 22) and healthy controls (n = 94). Repeat sizing in C9orf72, ATXN1 and ATXN2 was performed by fluorescent polymerase chain reaction (PCR) and capillary electrophoresis, while repeat-primed PCR was used to confirm C9orf72 expansions. APOE genotyping was conducted using real-time PCR assays targeting SNPs rs429358 and rs7412. Results: In the ALS/FTD cohort, 31.82% of the patients had heterozygous C9orf72 repeat expansion. The most common APOE genotype among patients was ε3/ε3 (72.73%). Intermediate-length ATXN1 alleles (32–44 repeats) were detected in 13.64% of patients and ATXN2 intermediate-length alleles (27–33 repeats) were found in 9% of patients. No significant differences were observed between ALS/FTD patients and controls in APOE ε4 frequency or intermediate ATXN1/ATXN2 repeats. Conclusions: Larger, population-specific studies and meta-analyses are needed to better understand the role of genetic modifiers in ALS/FTD pathogenesis and their influence on clinical heterogeneity. By integrating genetic and clinical data, this study represents a step toward the development of precision medicine strategies for ALS/FTD. Full article
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34 pages, 8775 KB  
Review
Towards Fault-Aware Image Captioning: A Review on Integrating Facial Expression Recognition (FER) and Object Detection
by Abdul Saboor Khan, Muhammad Jamshed Abbass and Abdul Haseeb Khan
Sensors 2025, 25(19), 5992; https://doi.org/10.3390/s25195992 (registering DOI) - 28 Sep 2025
Abstract
The term “image captioning” refers to the process of converting an image into text through computer vision and natural language processing algorithms. Image captioning is still considered an open-ended topic despite the fact that visual data, most of which pertains to images, is [...] Read more.
The term “image captioning” refers to the process of converting an image into text through computer vision and natural language processing algorithms. Image captioning is still considered an open-ended topic despite the fact that visual data, most of which pertains to images, is readily available in today’s world. This is despite the fact that recent developments in computer vision, such as Vision Transformers (ViT) and language models using BERT and GPT, have opened up new possibilities for the field. The purpose of this review paper is to provide an overview of the present status of the field, with a specific emphasis on the use of facial expression recognition and object detection for the purpose of image captioning, particularly in the context of fault-aware systems and Prognostics and Health Management (PHM) applications within Industry 4.0 environments. However, to the best of our knowledge, no review study has focused on the significance of facial expressions in relation to image captioning, especially in industrial settings where operator facial expressions can provide valuable insights for fault detection and system health monitoring. This is something that has been overlooked in the existing body of research on image captioning, which is the primary reason why this study was conducted. During this paper, we will talk about the most important approaches and procedures that have been utilized for this task, including fault-aware methodologies that leverage visual data for PHM in smart manufacturing contexts, and we will highlight the advantages and disadvantages of each strategy. The purpose of this review is to present a comprehensive assessment of the current state of the field and to recommend topics for future research that will lead to machine-translated captions that are more detailed and accurate, particularly for Industry 4.0 applications where visual monitoring plays a crucial role in system diagnostics and maintenance. Full article
(This article belongs to the Special Issue Sensors and IoT Technologies for the Smart Industry)
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20 pages, 9496 KB  
Article
Genome-Wide Analysis of the HECT-Type E3 Ubiquitin Ligase Gene Family in Nicotiana benthamiana: Evidence Implicating NbHECT6 and NbHECT13 in the Response to Tomato Yellow Leaf Curl Virus Infection
by Jin Shen, Shasha Yu, Fang Ye, Yiming Zhang, Xue Wu, Mengxuan Shi, Gen Zhao, Yang Shen, Zhoufo Lu, Zaihang Yu, Xinyu Li, Xueting Zhong and Zhanqi Wang
Genes 2025, 16(10), 1150; https://doi.org/10.3390/genes16101150 (registering DOI) - 27 Sep 2025
Abstract
Background: The ubiquitin–proteasome system plays a critical role in plant antiviral defense, with HECT-type E3 ubiquitin ligases serving as key regulators of protein turnover. To explore the potential involvement of the HECT gene family in host resistance against tomato yellow leaf curl [...] Read more.
Background: The ubiquitin–proteasome system plays a critical role in plant antiviral defense, with HECT-type E3 ubiquitin ligases serving as key regulators of protein turnover. To explore the potential involvement of the HECT gene family in host resistance against tomato yellow leaf curl virus (TYLCV), a comprehensive analysis was conducted in Nicotiana benthamiana. Methods: In this study, the HECT gene family in N. benthamiana was systematically investigated using a genome-wide bioinformatic analysis. The potential roles of these genes in the response to TYLCV infection were further examined using a virus-induced gene silencing (VIGS) technique. Results: Using a Hidden Markov Model approach, 18 NbHECT genes were identified that phylogenetically clustered into four subfamilies with distinct structural features. Chromosomal location and synteny analyses indicated that these genes were unevenly distributed across 11 chromosomes, with 10 instances of segmental duplication identified. Tissue-specific expression profiling demonstrated that 17 NbHECTs were constitutively expressed, with Group III members showing the highest expression in reproductive tissues. Following TYLCV infection, NbHECT6 was significantly downregulated while NbHECT13 was upregulated in both inoculated and systemic leaves. Functional validation through the VIGS approach revealed that suppression of NbHECT6 and NbHECT13 increased host susceptibility, as evidenced by exacerbated symptom severity and enhanced viral DNA accumulation compared to controls. Conclusions: These findings establish NbHECT6 and NbHECT13 as critical components of the plant antiviral response, providing new insights into ubiquitin-mediated defense mechanisms against geminiviruses. Full article
(This article belongs to the Section Plant Genetics and Genomics)
23 pages, 1684 KB  
Article
Human Papillomavirus Vaccination Coverage Estimates Among the Primary Target Cohort (9–14-Year-Old Girls) in the World (2010–2024)
by Irena Ilic and Milena Ilic
Vaccines 2025, 13(10), 1010; https://doi.org/10.3390/vaccines13101010 (registering DOI) - 27 Sep 2025
Abstract
Background/Objectives: Monitoring human papillomavirus (HPV) vaccine coverage worldwide can provide valuable insight into cervical cancer prevention. The aim of this manuscript was to assess the HPV vaccination coverage among the primary target cohort (9–14-year-old girls) in the world from 2010 to 2024. [...] Read more.
Background/Objectives: Monitoring human papillomavirus (HPV) vaccine coverage worldwide can provide valuable insight into cervical cancer prevention. The aim of this manuscript was to assess the HPV vaccination coverage among the primary target cohort (9–14-year-old girls) in the world from 2010 to 2024. Methods: A descriptive epidemiological study (with an ecological study design) was carried out. Trends in HPV vaccination coverage were examined using the joinpoint regression analysis. Results: The HPV vaccination was introduced into the national schedule of 147 countries in 2024. Globally, coverage with the first dose of the HPV vaccine in the primary target cohort (9–14-year-old girls) was estimated at 56.9% in 2024. The growth trend in HPV vaccination coverage was significant mainly in the most developed countries (e.g., such as the USA, Canada and Germany), while trends were 10 times faster in other countries such as Armenia, Indonesia and Tanzania. A decline in trends of HPV vaccination coverage was significant in some developing countries (e.g., such as Panama, Sri Lanka, and Suriname) and in one of the most developed countries—the United Kingdom. Conclusions: A better understanding of changes in HPV vaccination coverage worldwide and further efforts to improve coverage to the target of 90% may contribute to more effective disease prevention. Full article
22 pages, 21059 KB  
Article
Numerical Investigation of the Erosive Dynamics of Glacial Lake Outburst Floods: A Case Study of the 2020 Jinwuco Event in Southeastern Tibetan Plateau
by Shuwu Li, Changhu Li, Pu Li, Yifan Shu, Zhengzheng Li and Zhang Wang
Water 2025, 17(19), 2837; https://doi.org/10.3390/w17192837 (registering DOI) - 27 Sep 2025
Abstract
Glacial lake outburst floods (GLOFs) represent increasingly common and high-magnitude geohazards across the cryosphere of the Tibetan Plateau, particularly under ongoing climate warming and glacier retreat. This study combines multi-temporal remote sensing imagery and detailed Flo-2D hydrodynamic modeling to investigate the erosive dynamics [...] Read more.
Glacial lake outburst floods (GLOFs) represent increasingly common and high-magnitude geohazards across the cryosphere of the Tibetan Plateau, particularly under ongoing climate warming and glacier retreat. This study combines multi-temporal remote sensing imagery and detailed Flo-2D hydrodynamic modeling to investigate the erosive dynamics of the 2020 Jinwuco GLOF in Southeastern Tibetan Plateau. Key conclusions include: (1) The 2.35 km-long flood routing channel exhibits pronounced non-uniformity in horizontal curvature, channel width, and cross-sectional shape, significantly influencing flood propagation; five representative cross-sections divide the channel into six distinct segments. (2) Prominent lateral erosion occurred proximally to the dam, attributable to extreme erosive forces and high sediment transport capacity during peak discharge, with horizontal channel curvature further amplifying local impact and erosion. (3) Erosion rates were highest near the dam and in downstream narrow segments, while mid-reach sections with greater width experienced lower erosion. (4) Maximum flow depths reached 28.12 m in topographically confined reaches, whereas peak velocities occurred in upstream and downstream curved sections. (5) The apparent critical erosive shear stress of bank material is controlled not only by soil strength but also by flood dynamics and pre-existing channel morphology, indicating strong feedback between flow dynamics, channel morphology, and critical erosive shear stress of bank material. This study provides a generalized and transferable framework for analyzing GLOF-related erosion in data-scarce high-altitude regions, offering critical insights for hazard assessment, regional planning, and risk mitigation strategies. Full article
(This article belongs to the Special Issue Water-Related Landslide Hazard Process and Its Triggering Events)
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16 pages, 4987 KB  
Article
Nitrogen Transformation Survival Strategies of Ammonia-Oxidizing Bacterium N.eA1 Under High Nitrite Stress
by Zhiyao Yan, Kai Li, Yuhang Liu, Zhijun Ren, Xueying Li and Haobin Yang
Sustainability 2025, 17(19), 8708; https://doi.org/10.3390/su17198708 (registering DOI) - 27 Sep 2025
Abstract
Ammonia-oxidizing bacteria (AOB) are key to the nitrogen cycle, but their resistance to nitrite (NO2-N) accumulation is unclear. This study examined N.eA1, an AOB from the completely autotrophic nitrogen removal over nitrite (CANON) process, assessing its adaptive responses to [...] Read more.
Ammonia-oxidizing bacteria (AOB) are key to the nitrogen cycle, but their resistance to nitrite (NO2-N) accumulation is unclear. This study examined N.eA1, an AOB from the completely autotrophic nitrogen removal over nitrite (CANON) process, assessing its adaptive responses to NO2-N. The ammonia oxidation and N2O emission were evaluated at varying NO2-N levels, and 3D fluorescence, extracellular polymeric substances (EPS), and soluble microbial products (SMP) analysis were used to probe stress responses. Cellular respiration and key enzyme activities were measured, and proteomics was applied to study protein expression changes. Results showed that higher NO2-N levels boosted N2O production, inhibited nitrification, and stimulated denitrification in N.eA1. At 100 mg·L−1 NO2-N, EPS rose and SMP fell, with ammonia monooxygenase (AMO) suppressed and nitrite reductase (NIR) as well as nitric oxide reductase (NOR) enhanced. Gene expression analysis revealed decreased AMO, hydroxylamine oxidoreductase (HAO), and energy transport-related enzymes, but increased NIR and NOR genes. The downregulation of electron transport complex genes offered insights into molecular adaptation to nitrite stress of N.eA1, highlighting the interplay between metabolic and genetic responses, which is essential for developing sustainable and efficient nitrogen management strategies. Full article
(This article belongs to the Special Issue Sustainability and Advanced Research on Microbiology)
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35 pages, 1893 KB  
Review
Insights into Persistent SARS-CoV-2 Reservoirs in Chronic Long COVID
by Swayam Prakash, Sweta Karan, Yassir Lekbach, Delia F. Tifrea, Cesar J. Figueroa, Jeffrey B. Ulmer, James F. Young, Greg Glenn, Daniel Gil, Trevor M. Jones, Robert R. Redfield and Lbachir BenMohamed
Viruses 2025, 17(10), 1310; https://doi.org/10.3390/v17101310 (registering DOI) - 27 Sep 2025
Abstract
Long COVID (LC), also known as post-acute sequelae of COVID-19 infection (PASC), is a heterogeneous and debilitating chronic disease that currently affects 10 to 20 million people in the U.S. and over 420 million people globally. With no approved treatments, the long-term global [...] Read more.
Long COVID (LC), also known as post-acute sequelae of COVID-19 infection (PASC), is a heterogeneous and debilitating chronic disease that currently affects 10 to 20 million people in the U.S. and over 420 million people globally. With no approved treatments, the long-term global health and economic impact of chronic LC remains high and growing. LC affects children, adolescents, and healthy adults and is characterized by over 200 diverse symptoms that persist for months to years after the acute COVID-19 infection is resolved. These symptoms target twelve major organ systems, causing dyspnea, vascular damage, cognitive impairments (“brain fog”), physical and mental fatigue, anxiety, and depression. This heterogeneity of LC symptoms, along with the lack of specific biomarkers and diagnostic tests, presents a significant challenge to the development of LC treatments. While several biological abnormalities have emerged as potential drivers of LC, a causative factor in a large subset of patients with LC, involves reservoirs of virus and/or viral RNA (vRNA) that persist months to years in multiple organs driving chronic inflammation, respiratory, muscular, cognitive, and cardiovascular damages, and provide continuous viral antigenic stimuli that overstimulate and exhaust CD4+ and CD8+ T cells. In this review, we (i) shed light on persisting virus and vRNA reservoirs detected, either directly (from biopsy, blood, stool, and autopsy samples) or indirectly through virus-specific B and T cell responses, in patients with LC and their association with the chronic symptomatology of LC; (ii) explore potential mechanisms of inflammation, immune evasion, and immune overstimulation in LC; (iii) review animal models of virus reservoirs in LC; (iv) discuss potential T cell immunotherapeutic strategies to reduce or eliminate persistent virus reservoirs, which would mitigate chronic inflammation and alleviate symptom severity in patients with LC. Full article
(This article belongs to the Special Issue SARS-CoV-2, COVID-19 Pathologies, Long COVID, and Anti-COVID Vaccines)
22 pages, 5917 KB  
Article
Loop Modeling of the Reciprocal Inhibition Between HPA and HPG Endocrine Axes Reveals Transitions to Bistability and Critical Bifurcation Parameters
by Ilaria Demori, Seth Siriya and Bruno Burlando
Appl. Sci. 2025, 15(19), 10483; https://doi.org/10.3390/app151910483 (registering DOI) - 27 Sep 2025
Abstract
Endocrine axes are pathways of interactions involved in various aspects of the organism’s functioning, also implicated in deviations from physiological states leading to pathological conditions. The hypothalamic–pituitary–adrenal (HPA) axis releases corticosteroid hormones promoting adaptation to environmental stimuli (acute stress) or inducing altered conditions [...] Read more.
Endocrine axes are pathways of interactions involved in various aspects of the organism’s functioning, also implicated in deviations from physiological states leading to pathological conditions. The hypothalamic–pituitary–adrenal (HPA) axis releases corticosteroid hormones promoting adaptation to environmental stimuli (acute stress) or inducing altered conditions due to long-term noxious solicitations (chronic stress). The HP–gonadal (HPG) axis regulates reproductive activities by releasing gonadal steroids. These axes have been shown to engage in reciprocal inhibition under certain conditions, particularly when they rise beyond normal ultradian and circadian fluctuations. Based on the literature data, we reconstructed a neuroendocrine network responsible for this type of interaction. Thereafter, we developed a model of the HPA-HPG inhibition based on a series of nonlinear interactions represented by a system of differential equations in the Matlab environment. The quantitative analysis of the system’s behavior revealed the occurrence of bifurcations leading to bistable behavior, allowing us to detect bifurcation parameters. Bifurcation arises as the system’s components increase hypersensitivity and sustained activity in response to activating inputs. This involves transition from a single low-activity attractor to two distinct attractors, with a new high-activity state representing a breakdown of homeostasis. These results provide insights into the potential involvement of the HPA-HPG interaction in neuroendocrine disorders, and the identification of therapeutic targets from bifurcation parameters. Full article
(This article belongs to the Section Chemical and Molecular Sciences)
26 pages, 4386 KB  
Article
Sex-Specific Gene Expression Differences in Varicose Veins
by Mariya A. Smetanina, Valeria A. Korolenya, Ksenia S. Sevostyanova, Konstantin A. Gavrilov, Fedor A. Sipin, Andrey I. Shevela and Maxim L. Filipenko
Biomedicines 2025, 13(10), 2373; https://doi.org/10.3390/biomedicines13102373 (registering DOI) - 27 Sep 2025
Abstract
Background/Objectives: There is clear evidence for the higher prevalence of varicose veins (VVs) among women. In this regard, the research on sex differences affecting this condition is very important for sex-specific health care. We aimed to assess how male or female sex [...] Read more.
Background/Objectives: There is clear evidence for the higher prevalence of varicose veins (VVs) among women. In this regard, the research on sex differences affecting this condition is very important for sex-specific health care. We aimed to assess how male or female sex may contribute to the changes to gene expression profiles in the vein wall during varicose transformation. Methods: Paired varicose vein (VV) and non-varicose vein (NV) segments were harvested from patients with VVs after venous surgery. Processed RNAs from those samples were subjected to gene expression analysis by reverse transcription quantitative polymerase chain reaction (RT-qPCR) followed by further data analysis. Multiple linear regression (MLR) analysis was performed to identify and characterize relationships among multiple factors (relative mRNA levels of a gene in NV or VV or their ratio, as dependent variables) and sex (independent variable, used individually or in combination with other patient’s characteristics). For sex-specific gene regulation analysis, all potential binding sites for sex hormone receptors were identified in each gene’s regulatory region sequence. Results: Using the independent method and a replicative patient sample set, we validated our previous data on 23 genes’ differential expression in VVs and obtained insights on their sex-specific regulation. Sex (as an individual independent variable or in combination with other parameters—patient characteristics such as Age, BMI, CEAP class, Height, VVD manifestation and duration) was a moderate predictor (0.40 < R < 0.59; p (R) < 0.05) for the STK38L expression in VVs (with its higher mRNA level in NVs and VVs of women compared to men); sex was a strong predictor (0.6 < R < 0.79; p (R) < 0.05) for the TIMP1 expression in VVs (with its lower mRNA level in VVs of women compared to men); sex was a moderate predictor (0.40 < R < 0.59; p (R) < 0.05) for the EBF1 expression in NVs (with its lower mRNA level in NVs of women compared to men). Conclusions: Confirmed differential expression of the studied genes in VVs indicates their plausible participation in vein wall remodeling. Sex-specific expression in veins for the subset of those genes suggests their hormonal regulation as well as other mechanisms involved in VV pathogenesis. This work enriches our understanding of sex features for the development of VVs and may provide the foundation for future investigations and beneficial treatment options. Full article
(This article belongs to the Special Issue Unveiling the Genetic Architecture of Complex and Common Diseases)
21 pages, 2309 KB  
Article
Effect of Season on Testicular Development and Spermatogenesis in Hu Sheep: Insights from Antioxidant Indices, Oxylipins, and Transcriptomics
by Wanhong Li, Xinyue Zhang, Jie Shen and Xiuxiu Weng
Animals 2025, 15(19), 2824; https://doi.org/10.3390/ani15192824 (registering DOI) - 27 Sep 2025
Abstract
Numerous factors, including genetic, environmental, and nutritional, are involved in testicular development and spermatogenesis. However, little is known about the effects of seasonal factors on pre-sexual maturity testicular development in Hu rams, which are famous for their high fertility and year-round estrus onset. [...] Read more.
Numerous factors, including genetic, environmental, and nutritional, are involved in testicular development and spermatogenesis. However, little is known about the effects of seasonal factors on pre-sexual maturity testicular development in Hu rams, which are famous for their high fertility and year-round estrus onset. This study explored the effect of the birth season on testicular development and spermatogenesis in Hu sheep. Thirty-six 6-month-old male lambs born in summer (n = 18) and winter (n = 18) were selected for analysis. Results showed that summer-born lambs exhibited significantly higher cauda sperm density (102.65 ± 9.56 vs. 16.86 ± 2.02 × 107/g), antioxidant indices such as superoxide dismutase (SOD: 6.29 ± 1.01 vs. 4.09 ± 0.25 U/mgprot), and higher expression levels of glutathione peroxidase 3 (GPX3), glutathione peroxidase 4 (GPX4), and copper/zinc superoxide dismutase (Cu/Zn-SOD) than winter-born lambs. Conversely, the malondialdehyde content (1.08 ± 0.32 vs. 2.13 ± 0.34 nmol/mgprot) was significantly lower in the summer-born group (p < 0.05) than in the winter-born group. A total of 44 differential oxylipins and 326 differentially expressed genes (DEGs) were screened by ultra-performance liquid chromatography–tandem mass spectrometry and transcriptomics, respectively. An integrated analysis of oxylipins and transcriptomics revealed that these differential molecules were enriched in metabolic pathways. Notably, downregulated DEGs (e.g., UAP1L1 and NAT8L) were significantly correlated with upregulated differential oxylipins (e.g., epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids). These results indicate that compared to the winter-born group, the testicular tissues of summer-born rams showed stronger testicular antioxidant capacity and lower lipid peroxidation at the sexual maturity stage, which contributes to spermatogenesis. Full article
25 pages, 7550 KB  
Article
CG-Based Stratification of 8-mers Highlights Functional Roles and Phylogenetic Divergence Markers
by Guojun Liu, Hu Meng, Zhenhua Yang, Guoqing Liu, Yongqiang Xing and Ningkun Xiao
Int. J. Mol. Sci. 2025, 26(19), 9477; https://doi.org/10.3390/ijms26199477 (registering DOI) - 27 Sep 2025
Abstract
K-mer analysis is a powerful tool for understanding genome structure and evolution. A “k-mer” refers to a short DNA sequence made up of k nucleotides (where k is a specific integer), while an “m-mer” is a similar concept but with a shorter sequence [...] Read more.
K-mer analysis is a powerful tool for understanding genome structure and evolution. A “k-mer” refers to a short DNA sequence made up of k nucleotides (where k is a specific integer), while an “m-mer” is a similar concept but with a shorter sequence length. The functional mechanisms of CG-containing k-mers, as well as their potential role in evolutionary processes, remain unclear. To explore this issue, we analyzed 8-mers in several species with varying genomic complexities and evolutionary divergences: Homo sapiens, Saccharomyces cerevisiae, Bombyx mori, Ciona intestinalis, Danio rerio, and Caenorhabditis elegans, which were grouped by CG dinucleotide content (0CG, 1CG, and 2CG). We examined the relative frequencies of shorter m-mers (with m = 3 and 4) within each CG-defined group, using information-theoretic, distance-based, and angular metrics. Our results show that 0CG motifs follow random patterns, while 1CG and 2CG motifs display significant deviations, likely due to functional constraints such as nucleosome-binding and CpG island association. The observed unimodal distribution of 8-mers arises from the convergence of the three CG-defined groups. Among them, the 2CG group shows the highest divergence in m-mer composition, followed by 1CG, reflecting varying degrees of selective pressure. Furthermore, species-specific differences in CG-classified 8-mer patterns could provide valuable insights into phylogenetic relationships. Through extensive comparison, we explore how CG content and sequence composition influence genomic organization and contribute to evolutionary divergence across different taxa. These findings deepen our understanding of short motif functions, genome organization, and sequence evolution. Full article
(This article belongs to the Special Issue Statistical Approaches to Omics Data: Searching for Biological Truth)
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21 pages, 1493 KB  
Systematic Review
From Echocardiography to CT/MRI: Lessons for AI Implementation in Cardiovascular Imaging in LMICs—A Systematic Review and Narrative Synthesis
by Ahmed Marey, Saba Mehrtabar, Ahmed Afify, Basudha Pal, Arcadia Trvalik, Sola Adeleke and Muhammad Umair
Bioengineering 2025, 12(10), 1038; https://doi.org/10.3390/bioengineering12101038 (registering DOI) - 27 Sep 2025
Abstract
Objectives: The aim of this study was to synthesize current evidence on artificial intelligence (AI) adoption in cardiovascular imaging across low- and middle-income countries (LMICs), highlighting diagnostic performance, implementation barriers, and potential solutions. Methods: We conducted a systematic review of PubMed, [...] Read more.
Objectives: The aim of this study was to synthesize current evidence on artificial intelligence (AI) adoption in cardiovascular imaging across low- and middle-income countries (LMICs), highlighting diagnostic performance, implementation barriers, and potential solutions. Methods: We conducted a systematic review of PubMed, Embase, Cochrane Library, Web of Science, and Scopus for studies evaluating AI-based echocardiography, cardiac CT, or cardiac MRI in LMICs. Articles were screened according to PRISMA guidelines, and data on diagnostic outcomes, challenges, and enabling factors were extracted and narratively synthesized. Results: Twelve studies met the inclusion criteria. AI-driven methods frequently surpassed 90% accuracy in detecting coronary artery disease, rheumatic heart disease, and left ventricular hypertrophy, often enabling task shifting to non-expert operators. Challenges included limited dataset diversity, operator dependence, infrastructure constraints, and ethical considerations. Insights from high-income countries, such as automated segmentation and accelerated imaging, suggest potential for broader AI integration in cardiac MRI and CT. Conclusions: AI holds promise for enhancing cardiovascular care in LMICs by improving diagnostic accuracy and workforce efficiency. However, multi-center data sharing, targeted training, reliable infrastructure, and robust governance are essential for sustainable adoption. This review underscores AI’s capacity to bridge resource gaps in LMICs, offering practical pathways for future research, clinical practice, and policy development in global cardiovascular imaging. Full article
13 pages, 1993 KB  
Article
Microencapsulation of Carotenoid-Enriched Plant-Based Oils by Spray-Drying Using Alternative Vegan Wall Materials: A Strategy to Improve Stability and Antioxidant Activity
by Marta Díez, Gonzalo Berzal, Paz García-García and Francisco J. Señoráns
Phycology 2025, 5(4), 51; https://doi.org/10.3390/phycology5040051 (registering DOI) - 27 Sep 2025
Abstract
Sustainable plant-based materials are becoming more popular as a substitute for those of animal origin for the encapsulation of compounds. Among different techniques, microencapsulation is widely used to protect bioactives and keep them intact to reach the desired target area. In this work, [...] Read more.
Sustainable plant-based materials are becoming more popular as a substitute for those of animal origin for the encapsulation of compounds. Among different techniques, microencapsulation is widely used to protect bioactives and keep them intact to reach the desired target area. In this work, microencapsulation of oils by spray-drying using alternative vegan materials was proposed to mitigate oxidative degradation of oils. The determination of the best combination and ratio for different vegan wall materials (pectin, inulin, pea protein, and modified corn starch) was first developed using high-oleic sunflower oil enriched with β-carotene. In terms of efficiency, the best wall materials were pectin and inulin (P:I) in a 1:1 ratio, achieving 67.26 ± 0.78%. This ratio also obtained the best morphological results for shape and size studied by SEM (scanning electron microscopy) and DLS (dynamic light scattering). Additionally, the antioxidant activity of the oil enriched with β-carotene was studied, obtaining an IC5O of 0.15 mg/mL. Moreover, when Schizochytrium sp. was used instead of sunflower oil, as a docosahexaenoic acid (DHA)-enriched plant-based oil, the best results were also obtained for the P:I mixture, but at a ratio of 1:5. In all cases, the preservation of fatty acid profiles was achieved, giving insights for the potential use of alternative materials. The synergy between the use of antioxidants and encapsulation provides an effective method to avoid oxidation of edible oils. This work demonstrates the possibility of encapsulating carotenoid-enriched microalgae oil with vegan materials, improving its stability and bioavailability. Full article
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22 pages, 996 KB  
Systematic Review
Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency
by Tumo Kgabeng, Lulu Wang, Harry M. Ngwangwa and Thanyani Pandelani
Bioengineering 2025, 12(10), 1037; https://doi.org/10.3390/bioengineering12101037 (registering DOI) - 27 Sep 2025
Abstract
Advances in cardiac regenerative medicine increasingly rely on integrating artificial intelligence with spatial multi-omics technologies to decipher intricate cellular dynamics in cardiomyocyte differentiation. This systematic review, synthetising insights from 88 PRISMA selected studies spanning 2015–2025, explores how deep learning architectures, specifically Graph Neural [...] Read more.
Advances in cardiac regenerative medicine increasingly rely on integrating artificial intelligence with spatial multi-omics technologies to decipher intricate cellular dynamics in cardiomyocyte differentiation. This systematic review, synthetising insights from 88 PRISMA selected studies spanning 2015–2025, explores how deep learning architectures, specifically Graph Neural Networks (GNNs) and Recurrent Neural Networks (RNNs), synergise with multi-modal single-cell datasets, spatially resolved transcriptomics, and epigenomics to advance cardiac biology. Innovations in spatial omics technologies have revolutionised our understanding of the organisation of cardiac tissue, revealing novel cellular communities and metabolic landscapes that underlie cardiovascular health and disease. By synthesising cutting-edge methodologies and technical innovations across these 88 studies, this review establishes the foundation for AI-enabled cardiac regeneration, potentially accelerating the clinical adoption of regenerative treatments through improved therapeutic prediction models and mechanistic understanding. We examine deep learning implementations in spatiotemporal genomics, spatial multi-omics applications in cardiac tissues, cardiomyocyte differentiation challenges, and predictive modelling innovations that collectively advance precision cardiology and next-generation regenerative strategies. Full article
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