Search Results (469)

Improving the quality of oil-contaminated soils remains a critical challenge, and bioaugmentation using allochthonous bacteria offers promising perspectives. This study proposes a framework for exogenous bioaugmentation using a bacterial consortium, composed of strains from diverse climates, immobilized in alginate beads and combined with calcium peroxide as an oxygen-releasing compound. Two conditions were tested: freshly prepared beads (BA) and lyophilized beads (LA). Their performance was compared to natural attenuation (NA) and to landfarming coupled with bioaugmentation using a free autochthonous consortium. Hydrocarbon degradation was assessed through total petroleum hydrocarbon (TPH) and alkane depletion (GC-MS), microbial community dynamics (amplicon sequencing), and abundance of the alkB gene (qPCR). In three months, the BA treatment achieved a 44% TPH reduction, outperforming LA (34%) and NA (10% less than BA). However, LA induced a marked increase in alkB gene copies and microbial biomass at the end of the experiment, suggesting greater long-term potential. Dominant genera varied across treatments: Rhodococcus in NA, Gordonia in BA, and Pseudomonas in LA. In parallel, the autochthonous consortium achieved up to 80% oil degradation. This study demonstrates the viability of lyophilized microbial consortia in scalable, ready-to-use formulations and provides an operational methodology for exogenous bioaugmentation as a tool for the remediation of hydrocarbon-contaminated soils. Full article

Indoor air pollution (IAP) has emerged as a critical yet underrecognized threat to public health, particularly in non-industrial environments such as homes, schools, and healthcare facilities. As individuals spend approximately 90% of their time indoors, exposure to indoor pollutants—such as particulate matter, volatile organic compounds (VOCs), polycyclic aromatic hydrocarbons (PAHs), and microbial contaminants—can lead to significant health risks. These risks disproportionately affect vulnerable populations, including children, the elderly, and individuals with pre-existing conditions. The effects range from mild respiratory symptoms to severe outcomes like asthma, cardiovascular diseases, and cancer. This review investigates the sources, typologies, and health effects of indoor air pollutants, with a focus on their implications for maternal and child health. In particular, children’s developing systems and higher metabolic intake make them more susceptible to airborne toxins. The study also explores the legal and regulatory frameworks surrounding indoor air quality (IAQ), emphasizing how increased awareness and scientific evidence are expanding the scope of medical–legal responsibility. Legal liabilities may arise for property owners, designers, or manufacturers when poor IAQ leads to demonstrable health outcomes. Despite growing concern, there remains a significant research gap concerning the long-term health effects of chronic low-level exposure in residential settings and the efficacy of mitigation strategies. The evolution of smart building technologies and green construction practices offers promising avenues to improve IAQ while maintaining energy efficiency. However, standards and regulations often lag behind scientific findings, highlighting the need for updated, enforceable policies that prioritize human health. This work underscores the urgency of a multidisciplinary and preventive approach to IAQ, integrating public health, environmental engineering, and legal perspectives. Future research should focus on real-time IAQ monitoring, targeted interventions for high-risk populations, and the development of comprehensive legal frameworks to ensure accountability and promote healthier indoor environments. Full article

Soil contamination in industrial areas often involves complex mixtures of contaminants, making remediation a significant challenge. Microbe-assisted phytoremediation offers a promising solution, yet its success depends on understanding interaction between plants, microorganisms, and contaminants in rhizosphere. This study examined the effects of organic (oil sludge) and inorganic (Zn) contaminants, applied individually and in combination, on the rhizosphere bacterial community of Miscanthus × giganteus Greef et Deu (M×g), with emphasis on strains exhibiting plant growth-promoting, hydrocarbon-degrading, and metal-tolerant traits. A one-season greenhouse experiment included soils spiked with Zn (1650 mg kg⁻¹) and/or oil sludge (15 mL kg⁻¹). Oil sludge exerted a stronger influence on the taxonomic structure of rhizobacterial communities than Zn, largely shaping the patterns observed under co-contamination. Zn exposure increased the relative abundance of Actinobacteriota, whereas oil sludge favoured Proteobacteriota. Both contaminants, individually and together, enhanced the proportion of Sphingomonadaceae. Across all treatments, taxa with potential plant-growth-promoting traits were present, while co-contaminated soil harboured microorganisms capable of hydrocarbon degradation, heavy metal tolerance, and plant growth promotion. These findings highlight the adaptive capacity of the M×g rhizobiome and support its application in phytoremediation. The isolation and characterisation of rhizosphere-associated strains provide basis for developing microbial bioagents to enhance biomass production and remediation efficiency in multi-contaminated environments. Full article

Enhanced Natural Attenuation (ENA) can accelerate pollutant degradation by adding electron acceptors or nutrients. However, its impact on carbon-fixing microorganisms, which are widely found in the natural attenuation process, remains unclear. In this study, four types of ENA materials were added in batch experiments. Chemical analysis and metagenomic sequencing were employed to analyze the degradation kinetics of petroleum hydrocarbons, the consumption pattern of nitrate, as well as the functional genes and population evolution characteristics of carbon-fixing microorganisms. Results showed that nitrate-based enhancement materials significantly improved the petroleum hydrocarbon degradation rate but suppressed the expression of some carbon fixation genes, such as those involved in the Calvin–Benson–Bassham cycle. Nevertheless, the overall abundance of carbon fixation genes did not show a notable decline. Dominant bacterial genera such as Pseudomonas and Achromobacter possessed both hydrocarbon degradation and carbon fixation capabilities. Although the calcium peroxide treatment group only achieved a 40% petroleum hydrocarbon degradation rate, it significantly promoted the abundance of carbon fixation genes involved in the reductive tricarboxylic acid cycle pathway. Therefore, ENA alters carbon fixation pathways but does not diminish carbon fixation potential, indicating its potential for synergistically achieving pollution remediation and carbon fixation. Full article

Petroleum pollution can pose a serious threat to soil health and its ecological functions. This study investigated the efficacy of bacterial treatments for bioremediation of diesel-contaminated soil under outdoor conditions for a period of 4 months. Unlike most previous studies conducted under laboratory conditions, this study applied single and multi-bacterial consortia directly into diesel-contaminated soil under outdoor conditions, evaluating both hydrocarbon degradation and soil toxicity changes. Three treatments using a single strain, a 4-strain consortium, and an 8-strain consortium were applied to 2% (v/w) diesel-contaminated soil, and their performance was compared to uncontaminated and untreated controls. Total petroleum hydrocarbon (TPH) degradation was quantified using GC-FID, and the soil toxicity was assessed using Eisenia fetida toxicity test and higher plant germination assays. As the experiment demonstrated, the multi-strain bacterial consortium (BT3) achieved the highest TPH degradation (78.3%) and demonstrated significant reduction in long-chain hydrocarbon fractions (C₁₄-C₂₈). Toxicity measurements showed that all three bioremediation treatments, especially BT3, significantly increased earthworm survival, body weight change and plant germination rate after the bioremediation. Microbial community analysis based on 16S rRNA sequencing revealed significant shifts in the dominant bacterial genera over time, accompanied by a noticeable reduction in alpha diversity. In particular, BT3 showed a significant decrease in Shannon diversity index values from 9.4 at S₁ to 6.9 at S₃ (p < 0.01), whereas BT1 and BT2 remained relatively stable (p > 0.05). Overall, the results demonstrated that all three bacterial treatments significantly enhanced diesel degradation and reduced soil toxicity under outdoor conditions, highlighting their potential for future large-scale applications in sustainable soil remediation. Importantly, this study combines constructed microbial consortia with multi-level toxicity assessments, providing a comprehensive framework to guide future bioremediation strategies. Full article

Air pollution is an escalating global challenge with profound implications for agricultural production and food security. This review explores the impacts of deteriorating air quality on global crop yields and food security, emphasizing both direct physiological effects on plants and broader environmental interactions. Key pollutants such as ground-level ozone (O₃), fine particulate matter (PM_2.5 and PM₁₀), nitrogen dioxide (NO₂), sulfur dioxide (SO₂), volatile organic compounds (VOCs), and polycyclic aromatic hydrocarbons (PAHs) reduce crop yield and quality. They have been shown to inhibit plant growth, potentially by affecting germination, morphology, photosynthesis, and enzyme activity. PAH contamination, for example, can negatively affect soil microbial communities essential for soil health, nutrient cycling and organic matter decomposition. They persist and accumulate in food products through the food chain, raising concerns about food safety. The review synthesizes evidence demonstrating how air pollution undermines the four pillars of food security: availability, access, utilization, and stability by reducing crop yields, elevating food prices, and compromising nutritional quality. The consequences are disproportionately severe in low- and middle-income countries, where regulatory and infrastructural limitations exacerbate vulnerability. This study examines mitigation strategies, including emission control technologies, green infrastructure, and precision agriculture, while stressing the importance of community-level interventions and real-time air quality monitoring through IoT and satellite systems. Integrated policy responses are urgently needed to bridge the gap between environmental regulation and agricultural sustainability. Notably, international cooperation and targeted investments in multidisciplinary research are essential to develop pollution-resilient crop systems and inform adaptive policy frameworks. This review identifies critical knowledge gaps regarding pollutant interactions under field conditions and calls for long-term, region-specific studies to assess cumulative impacts. Ultimately, addressing air pollution is not only vital for ecosystem health, but also for achieving global food security and sustainable development in a rapidly changing environment. Full article

Polycyclic aromatic hydrocarbons (PAHs) are a class of persistent organic pollutants composed of two or more fused benzene rings, posing serious threats to ecological environments and human health. Biodegradation is an efficient, economical, and sustainable approach for remediating PAHs pollution. In our previous work, we isolated and characterized a PAH-degrading bacterium, Burkholderia sp. FM-2. FM-2 demonstrated strong tolerance and efficient degradation capacity toward various PAHs, achieving 81.98% degradation of 2 mM phenanthrene within 3 days, and over 58% degradation of 2 mM fluorene, dibenzofuran, and dibenzothiophene under the same conditions. Through combined genomic and transcriptomic analyses, a putative PAH degradation gene cluster was identified in the FM-2 genome. Phylogenetic and domain architecture analyses were conducted on seven oxygenase genes within the cluster. Using AlphaFold 3, we predicted the three-dimensional structure of the downstream transport protein OmpW and proposed a potential transmembrane channel for PAHs uptake. To eliminate the phenanthrene degradation intermediate 1-hydroxy-2-naphthoic acid, a genetically engineered strain FM-2::nahG was constructed by heterologous expression of the salicylate hydroxylase gene (nahG). The modified strain completely abolished the accumulation of 1-hydroxy-2-naphthoic acid and achieved complete mineralization of phenanthrene. This study not only reveals the molecular basis of PAHs degradation in Burkholderia sp. FM-2 but also demonstrates the potential of metabolic engineering to enhance biodegradation ability, providing a promising microbial candidate for the bioremediation of PAH-polluted environments. Full article

Phytoremediation is widely acknowledged as a viable method for soil remediation; however, its efficacy remains limited in soils co-polluted with petroleum hydrocarbons and heavy metals. To overcome this constraint, the present study explored an innovative approach utilizing ferrate-modified biochar (FeBC) to augment phytoremediation efficiency. Experimental findings revealed that ferrate treatment markedly modified the physicochemical characteristics of biochar, yielding thinner, smoother-surfaced structures with pronounced iron enrichment. At a 5% application rate alongside ryegrass cultivation, FeBC exhibited superior remediation performance, achieving 52.0% degradation of petroleum hydrocarbons (notably within the meso-aggregate fraction) and a 19.2% decline in zinc bioavailability via immobilization, thereby reducing zinc uptake in ryegrass tissues. Furthermore, FeBC amendment induced significant shifts in rhizosphere soil biochemistry and microbial ecology, characterized by diminished catalase activity but elevated urease and alkaline phosphatase activities. Phospholipid fatty acid profiling indicated a substantial rise in bacterial biomass (encompassing both Gram-positive and Gram-negative groups), particularly in meso- and micro-aggregates, whereas soil bacterial α-diversity declined markedly, accompanied by distinct compositional changes across aggregate size fractions. These results offer mechanistic insights into the synergistic interaction between FeBC and ryegrass in co-contaminated soil rehabilitation, the aggregate-dependent distribution of remediation effects, and microbial community adaptations to FeBC treatment. Collectively, this study advances the understanding of ferrate-modified biochar’s role in phytoremediation enhancement and clarifies its operational mechanisms in petroleum-zinc co-contaminated soil systems. Full article

Integrating renewable energy requires robust, large-scale storage solutions to balance intermittent supply. Underground hydrogen storage (UHS) in geological formations, such as salt caverns, depleted hydrocarbon reservoirs, or aquifers, offers a promising way to store large volumes of energy for seasonal periods. This review focuses on the biological aspects of UHS, examining the biogeochemical interactions between H₂, reservoir minerals, and key hydrogenotrophic microorganisms such as sulfate-reducing bacteria, methanogens, acetogens, and iron-reducing bacteria within the gas–liquid–rock–microorganism system. These microbial groups use H₂ as an electron donor, triggering biogeochemical reactions that can affect storage efficiency through gas loss and mineral dissolution–precipitation cycles. This review discusses their metabolic pathways and the geochemical interactions driven by microbial byproducts such as H₂S, CH₄, acetate, and Fe²⁺ and considers biofilm formation by microbial consortia, which can further change the petrophysical reservoir properties. In addition, the review maps 76 ongoing European projects focused on UHS, showing 71% target salt caverns, 22% depleted hydrocarbon reservoirs, and 7% aquifers, with emphasis on potential biogeochemical interactions. It also identifies key knowledge gaps, including the lack of in situ kinetic data, limited field-scale monitoring of microbial activity, and insufficient understanding of mineral–microbe interactions that may affect gas purity. Finally, the review highlights the need to study microbial adaptation over time and the influence of mineralogy on tolerance thresholds. By analyzing these processes across different geological settings and integrating findings from European research initiatives, this work evaluates the impact of microbial and geochemical factors on the safety, efficiency, and long-term performance of UHS. Full article

Background/Objectives: Resistance of pathogenic microorganisms to antibiotics poses a serious threat to public health and often leads to devastating consequences. In this context, one of the pressing challenges in pharmacochemistry is the search for new, effective antibiotics to combat severe human diseases. Cyclic lipopeptides have emerged as some of the most promising candidates and have been widely studied. These compounds are a class of microbial secondary metabolites produced by various microorganisms, and they possess significant medical and biotechnological importance. The defining structural feature of these compounds is the presence of both a hydrophobic fragment, primarily a hydrocarbon tail of varying length, and a hydrophilic cyclic peptide moiety. This hydrocarbon tail confers amphiphilic properties to the lipopeptides, which are essential for their broad spectrum of biological activities. Their mechanism of action involves disruption of the cell membrane, and in many cases, the formation of ion-permeable defects has also been shown. Results: This review summarizes the data on cyclic lipopeptides produced by Pseudomonas spp., Streptomyces spp., and Bacillus spp. that modify membrane permeability through the formation of ion channels. The main emphasis is on understanding how the structure of the CLP can be related to the probability and mode of pore formation. Conclusions: The findings can contribute to expanding the arsenal of effective antimicrobial agents with a mechanism of action that reduces the risk of developing resistance. Full article

The biological production of hydrogen offers a renewable and potentially sustainable alternative for clean energy generation. In Northeast Brazil, depleted oil reservoirs (DORs) present a unique opportunity to integrate biotechnology with existing fossil fuel infrastructure. These subsurface formations, rich in residual hydrocarbons (RH) and native H₂ producing microbiota, can be repurposed as bioreactors for hydrogen production. This process, often referred to as “Gold Hydrogen”, involves the in situ microbial conversion of RH into H₂, typically via dark fermentation, and is distinct from green, blue, or grey hydrogen due to its reliance on indigenous subsurface biota and RH. Strategies include nutrient modulation and chemical additives to stimulate native hydrogenogenic genera (Clostridium, Petrotoga, Thermotoga) or the injection of improved inocula. While this approach has potential environmental benefits, such as integrated CO₂ sequestration and minimized surface disturbance, it also presents risks, namely the production of CO₂ and H₂S, and fracturing, which require strict monitoring and mitigation. Although infrastructure reuse reduces capital expenditures, achieving economic viability depends on overcoming significant technical, operational, and biotechnological challenges. If widely applied, this model could help decarbonize the energy sector, repurpose legacy infrastructure, and support the global transition toward low-carbon technologies. Full article

Carbon tetrachloride (CT) is a toxic volatile chlorinated hydrocarbon, posing a serious hazard to ecosystem and human health. This study discussed the bioremediation possibility of groundwater contaminated by CT. Enhanced reductive dechlorination bioremediation (ERD) was used to promote the reductive dechlorination process of CT by adding yeast extract as a supplementary electron donor. The microcosm samples of the Control and Experi group were setup in the experiment, and the CT degradation efficiency and microbial community structure changes over 150 days were monitored. The results showed that the Experi group achieved complete degradation of CT within 40 days, while the control group had no significant change. By analyzing the physical and chemical indexes such as VFAs, sulfate ions, oxidation–reduction potential, pH value and so on, the key changes in the degradation process of CT were revealed. Microbial community analysis showed that specific microorganisms such as Acinetobacter johnsonii, Aeromonas media and Enterobacter mori played a significant role in the degradation of CT. They may produce hydrogen through fermentation to provide electron donors for the reductive dechlorination of CT. In addition, the genes of reductive dehalogenase synthase related to CT degradation were also identified, which provided molecular evidence for understanding the biodegradation mechanism of CT. The results deliver a scientific basis for optimizing the bioremediation strategy of CT-contaminated groundwater. Full article

Type 2 diabetes (T2D) is a complex metabolic disease characterized by chronic hyperglycemia due to insulin resistance and inadequate insulin secretion. Beyond the classically implicated organs, emerging evidence highlights the gut as a central player in T2D pathophysiology through its interactions with metabolic organs. The gut hosts trillions of microbes and enteroendocrine cells that influence inflammation, energy homeostasis, and hormone regulation. Disruptions in gut homeostasis (dysbiosis and increased permeability) have been linked to obesity, insulin resistance, and β-cell dysfunction, suggesting multifaceted “Gut-X axes” contribute to T2D development. We aimed to comprehensively review the evidence for gut-mediated crosstalk with the pancreas, endocrine system, liver, and kidneys in T2D. Key molecular mechanisms (incretins, bile acids, short-chain fatty acids, endotoxins, etc.) were examined to construct an integrated model of how gut-derived signals modulate metabolic and inflammatory pathways across organs. We also discuss clinical implications of targeting Gut-X axes and identify knowledge gaps and future research directions. A literature search (2015–2025) was conducted in PubMed, Scopus, and Web of Science, following PRISMA guidelines (Preferred Reporting Items for Systematic Reviews). Over 150 high-impact publications (original research and review articles from Nature, Cell, Gut, Diabetologia, Lancet Diabetes & Endocrinology, etc.) were screened. Data on gut microbiota, enteroendocrine hormones, inflammatory mediators, and organ-specific outcomes in T2D were extracted. The GRADE framework was used informally to prioritize high-quality evidence (e.g., human trials and meta-analyses) in formulating conclusions. T2D involves perturbations in multiple Gut-X axes. This review first outlines gut homeostasis and T2D pathogenesis, then dissects each axis: (1) Gut–Pancreas Axis: how incretin hormones (GLP-1 and GIP) and microbial metabolites affect insulin/glucagon secretion and β-cell health; (2) Gut–Endocrine Axis: enteroendocrine signals (e.g., PYY and ghrelin) and neural pathways that link the gut with appetite regulation, adipose tissue, and systemic metabolism; (3) Gut–Liver Axis: the role of microbiota-modified bile acids (FXR/TGR5 pathways) and bacterial endotoxins in non-alcoholic fatty liver disease (NAFLD) and hepatic insulin resistance; (4) Gut–Kidney Axis: how gut-derived toxins and nutrient handling intersect with diabetic kidney disease and how incretin-based and SGLT2 inhibitor therapies leverage gut–kidney communication. Shared mechanisms (microbial SCFAs improving insulin sensitivity, LPS driving inflammation via TLR4, and aryl hydrocarbon receptor ligands modulating immunity) are synthesized into a unified model. An integrated understanding of Gut-X axes reveals new opportunities for treating and preventing T2D. Modulating the gut microbiome and its metabolites (through diet, pharmaceuticals, or microbiota therapies) can improve glycemic control and ameliorate complications by simultaneously influencing pancreatic islet function, hepatic metabolism, and systemic inflammation. However, translating these insights into clinical practice requires addressing gaps with robust human studies. This review provides a state-of-the-art synthesis for researchers and clinicians, underlining the gut as a nexus for multi-organ metabolic regulation in T2D and a fertile target for next-generation therapies. Full article

Ready-to-eat products are very popular and controversial due to their microbial safety. The main processing steps in obtaining a safe, edible product is heat treatment. The traditional manufacturing of meatballs, which conducts unhealthy compounds related to deep-fat-fried foods like the oil oxidation of harmful substances and polycyclic aromatic hydrocarbons, has been replaced with baking (180 °C) and steaming (94 °C). The addition of aqueous extract from two herbs, lemon balm (Melissa officinalis L.) or wild thyme (Thymus serpyllum L.), has led to twelve variants of meatballs, obtained from the tenderloin of three different animal species (pork, turkey, and beef). During processing, the food components go through conformational changes that affect the texture of the final product. In this study, differential scanning calorimetry for detecting and characterizing the thermal changes in meatballs was used. In addition, the influence of heat treatments on the textural and rheological parameters of meatballs was evaluated using instrumental methods. The cooking yield registered values of 61.21 ± 0.25% for steamed beef samples and 81.36 ± 0.86% for steamed turkey samples. The latest samples also showed the lowest firmness value, 3.41 ± 0.79 N. In this study, the addition of aqueous extracts did not considerably affect the texture and rheological behavior, which were influenced mainly by the heat treatment and meat type. Generally, steaming determined a firmer texture compared to baking. Full article

While under-ice submarine hydrothermal systems provide critical insights into extremophile adaptations, the ecological impacts of explosive volcanism on these ecosystems remain poorly constrained. We successfully detected evidence of hydrothermal activities and explosive volcanism at 85° E, the eastern volcanic zone, ultra-slow spreading Gakkel Ridge. Hydrothermal plume, surface sediments, and volcanic glass samples were systematically collected to investigate the diversity of microbial communities. Our results revealed two distinct microbial regimes in hydrothermal plume: (1) chemoautotrophic bacteria (Sulfurimonas and SUP05_cluster), prevalent in global basaltic hydrothermal systems, potentially involved in carbon fixation through the CBB and rTCA cycles and (2) Alcanivorax (up to 82.5%), known for degrading hydrocarbons. Sediment profiles showed a depth-dependent decline of Alcanivorax, tightly coupled with TOC (1.05% to 0.45%, r = 0.75, p < 0.05). Additionally, the Alcanivorax MAGs demonstrated their potential in degrading various types of organic carbon, especially in alkane degradation. Strikingly, this pattern contrasts with hydrothermal plumes from effusive volcanic zones (Aurora and Polaris regions), where Alcanivorax was undetectable. We speculate that the surge of Alcanivorax in the 85° E hydrothermal plume was associated with the violent disturbances caused by explosive volcanism. This mechanism accelerates microbial-mediated carbon turnover rates compared to a stable hydrothermal ecosystem. Full article