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21 pages, 1059 KB  
Article
A System-Level Framework Linking Actuator Control Accuracy to Energy Efficiency and Range Performance in PMSM-Driven Flight Control Systems
by Tieniu Chen, Xiaozhou He, Yunjiang Lou, Houde Liu and Kunfeng Zhang
Electronics 2026, 15(8), 1555; https://doi.org/10.3390/electronics15081555 (registering DOI) - 8 Apr 2026
Abstract
Permanent magnet synchronous motor (PMSM)-based servo actuators are fundamental to high-performance electromechanical systems. However, in energy-sensitive aerospace applications, the impact of tracking error on system-level efficiency remains insufficiently quantified. This paper establishes an energy-oriented analytical framework linking PMSM tracking accuracy to vehicle-level energy [...] Read more.
Permanent magnet synchronous motor (PMSM)-based servo actuators are fundamental to high-performance electromechanical systems. However, in energy-sensitive aerospace applications, the impact of tracking error on system-level efficiency remains insufficiently quantified. This paper establishes an energy-oriented analytical framework linking PMSM tracking accuracy to vehicle-level energy consumption and flight range. By employing a specific mechanical energy formulation, we demonstrate that tracking deviations modify aerodynamic drag and introduce additional dissipative work. Specifically, the accumulated dissipation is shown to admit a lower bound proportional to the integral of the squared tracking error, from which a range degradation bound is derived. These results reveal that “tracking-error energy” imposes a fundamental limit on achievable flight distance. A Lyapunov-based analysis further proves that minimizing this error energy reduces total aerodynamic dissipation without requiring modifications to propulsion scheduling or guidance laws. Numerical simulations comparing a conventional sliding mode controller with an advanced fuzzy-adaptive nonsingular terminal sliding mode controller confirm that enhanced servo precision directly improves velocity retention and range performance. This framework offers practical insights for designing energy-aware PMSM control strategies in energy-constrained aerospace platforms. Full article
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16 pages, 2293 KB  
Article
In Vitro Assessment of Retention and Fit Precision in Cast, 3D-Printed Cobalt-Chromium and Polyether Ether Ketone Clasps Subjected to Fatigue Cycling
by Mohammed Mudher Mohammed and Neda Mohammed Al-Kaisy
Oral 2026, 6(2), 42; https://doi.org/10.3390/oral6020042 - 8 Apr 2026
Abstract
Objectives: This study aimed to compare the retention and fit precision of removable partial denture circumferential clasps fabricated from cast cobalt–chromium, 3D-printed cobalt–chromium, and polyether ether ketone. Methods: A maxillary right first premolar abutment was prepared. Eighty circumferential clasps were allocated into three [...] Read more.
Objectives: This study aimed to compare the retention and fit precision of removable partial denture circumferential clasps fabricated from cast cobalt–chromium, 3D-printed cobalt–chromium, and polyether ether ketone. Methods: A maxillary right first premolar abutment was prepared. Eighty circumferential clasps were allocated into three material groups: cast Co–Cr (n = 20), 3D-printed Co–Cr (n = 20), and PEEK (n = 40). The terminal third of metal retentive clasps was designed to engage 0.25 mm and 0.50 mm undercuts. PEEK clasps were fabricated with two designs: partial (two-thirds) and full-arm undercut engagement. Each group was examined for retentive forces after 1440 cycles (simulating 1 year). Initial and final retentive forces were recorded. Clasp deformation was assessed by measuring inter-arm distance before and after cycling using digital photography and ImageJ software. Results: All clasp groups demonstrated a statistically significant reduction in retention after 1440 cycles (p < 0.05). At both undercut depths, cast and 3D-printed Co–Cr clasps exhibited significantly higher retentive forces than PEEK (p < 0.001). Within the PEEK group, full-arm engagement showed significantly higher retention than partial engagement at the 0.25 mm undercut (p < 0.001), whereas no significant difference was observed between designs at the 0.50 mm undercut (p = 0.406). Fit precision revealed a significant increase in inter-arm distance after cycling (p < 0.05). PEEK clasps exhibited significantly smaller dimensional changes than Co–Cr clasps (p < 0.02). Conclusions: Clasp material, undercut depth, and design significantly influenced retention and fit precision. Co–Cr clasps maintained higher retentive forces, whereas PEEK clasps demonstrated reduced deformation after cycling. Full article
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26 pages, 30041 KB  
Article
Integrative Transcriptome Analysis and WGCNA Uncover the Growth Regulatory Mechanisms in Cephalopholis sonnerati
by Ziyuan Wang, Yu Song, Runkai Sun, Zhenxia Sha, Yang Liu and Songlin Chen
Animals 2026, 16(8), 1128; https://doi.org/10.3390/ani16081128 - 8 Apr 2026
Abstract
The tomato hind (Cephalopholis sonnerati) is a marine aquaculture fish species with high economic value. Elucidating the mechanisms underlying its growth regulation is crucial for the development of the aquaculture industry. To analyze the biological mechanisms underlying growth differences, individuals with extreme body [...] Read more.
The tomato hind (Cephalopholis sonnerati) is a marine aquaculture fish species with high economic value. Elucidating the mechanisms underlying its growth regulation is crucial for the development of the aquaculture industry. To analyze the biological mechanisms underlying growth differences, individuals with extreme body sizes at 8 months of age from the same batch were selected in this study. A combined experiment of “body size × feeding status” was constructed, and transcriptome sequencing and weighted gene co-expression network analysis (WGCNA) were performed on brain and muscle tissues. The results showed that 2553 differentially expressed genes (DEGs) were identified between individuals with distinct body sizes, which were significantly enriched in growth regulation pathways such as PI3K–Akt, MAPK, and FoxO. Feeding differences affected 4480 genes, which were significantly enriched in signaling pathways including the insulin signaling pathway. WGCNA further identified co-expression modules (brown4, blue, coral1) significantly correlated with growth, as well as hub genes including pik3r1 and eif4ebp2. Comprehensive analysis demonstrated that the growth regulation of C. sonnerati operates as a cascade network. Brain tissues perceive signals through neuroactive ligand–receptor interactions and integrate and transduce these signals via core pathways including Ras–MAPK and PI3K–Akt. Finally, growth processes are executed in muscle tissues by regulating glycogen metabolism, protein synthesis, and other processes, which are precisely regulated by terminal processes such as cellular senescence. Among them, pik3r1 and eif4ebp2, as key molecular switches, play a central role in integrating upstream signals and precisely regulating downstream growth programs. This study preliminarily clarifies the molecular mechanism network of growth differences in C. sonnerati, providing a theoretical basis and candidate genes for the genetic improvement of its growth traits. Full article
(This article belongs to the Special Issue Sustainable Aquaculture: A Functional Genomic Perspective)
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19 pages, 3109 KB  
Article
Sustainable Risk Management of Damage to Seaport Infrastructure Caused by Vessel Impacts
by Teresa Abramowicz-Gerigk
Sustainability 2026, 18(8), 3653; https://doi.org/10.3390/su18083653 - 8 Apr 2026
Abstract
This paper presents an analysis of the risk of failure of port structures in a modern seaport due to vessel impacts. The analysis addresses potential damage related to port maneuvers of self-maneuvering vessels and possible risk reduction options that can be applied to [...] Read more.
This paper presents an analysis of the risk of failure of port structures in a modern seaport due to vessel impacts. The analysis addresses potential damage related to port maneuvers of self-maneuvering vessels and possible risk reduction options that can be applied to enhance port resilience. The proposed system model—including ship, port infrastructure, and environment—enabled the observation of both implemented and anticipated future risk reduction measures. The analysis was carried out using the ferry terminal in the large Polish Port of Gdynia as a case study. A Bayesian influence diagram—including decisions related to the implementation of risk reduction options—was used to determine the total risk associated with Ro-Pax ferry port calls. Sustainable risk management led to the implementation of a cloud-based monitoring system and, subsequently, to the design of a new terminal in line with the green port concept. The main result of the study was a quantitative assessment of the risk of damage to port infrastructure caused by ferries, related to ship maneuvering operations. A comparative assessment of the two locations demonstrated improved safety and reduced environmental pollution in the new Public Ferry Terminal. This improvement was made possible mainly by reduced spatial risk and the implementation of cold-ironing technology. Full article
(This article belongs to the Special Issue Sustainable Risk Management and Resilient Infrastructure)
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27 pages, 4990 KB  
Article
A Lightweight and Versatile Prosthetic Hand for Daily Grasping
by Shunping Zhao, Yuki Inoue, Zhenyu Chen, Yicong Lin, Junru Chen, E. Tonatiuh Jimenez-Borgonio, J. Carlos Sanchez-Garcia, Yinlai Jiang, Hiroshi Yokoi, Xiaobei Jing and Xu Yong
Biomimetics 2026, 11(4), 257; https://doi.org/10.3390/biomimetics11040257 - 8 Apr 2026
Abstract
To meet daily grasping needs under lightweight, low-complexity wearable constraints, this study proposes an underactuated multi-finger prosthetic hand with transmission–control co-design to achieve predictable multi-joint synergies and stable grasps under limited actuation. The prototype uses six miniature motors to drive 14 joint degrees [...] Read more.
To meet daily grasping needs under lightweight, low-complexity wearable constraints, this study proposes an underactuated multi-finger prosthetic hand with transmission–control co-design to achieve predictable multi-joint synergies and stable grasps under limited actuation. The prototype uses six miniature motors to drive 14 joint degrees of freedom (DOFs): four fingers have active metacarpophalangeal actuation with tendon-driven underactuated proximal and distal interphalangeal joints, while the thumb provides two independently controlled DOFs for opposition expansion and posture adjustment. It supports five-finger power grasps, tripod pinches, and lateral pinches. To mitigate tendon slack and stroke inconsistency, active/passive tendon-length constraints are defined, and an equal-stroke configuration is obtained via chord-to-arc mapping. A layered STM32F767-based controller combines a reference rotation range limit (free motion) with encoder speed-decay detection (contact/near-stall) to realize per-finger termination and overdrive protection without force/tactile sensors. Experiments report a total mass of 176.6 g and a peak single-finger driving force of approximately 2.8 N. Following the Feix GRASP taxonomy (33 types), the hand reproduces 24 types (72.7%), covering power, intermediate and precision grasps, both thumb abduction/adduction postures, and palm–pad–side opposition/contact, with stable grasp formation across objects of varying geometries. Full article
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14 pages, 2763 KB  
Article
Sol-Gel Derived Dual-Functional Organosilicone Coating for Enhanced Solar Panel Performance
by Jianping Huang, Xinyue Liu, Junjie Liu, Ling Yang, Jiang Li, Ziya Bai, Qingfei Zhao, Jinzhi Tong and Tiezheng Lv
Gels 2026, 12(4), 316; https://doi.org/10.3390/gels12040316 - 8 Apr 2026
Abstract
In this study, a non-typical luminescent organosilicone was synthesized through a click reaction and used as a cross-linker to cure hydroxyl-terminated dimethylsilicone oil at room temperature via the sol–gel process, followed by application as a coating on a glass surface. This organosilicone film [...] Read more.
In this study, a non-typical luminescent organosilicone was synthesized through a click reaction and used as a cross-linker to cure hydroxyl-terminated dimethylsilicone oil at room temperature via the sol–gel process, followed by application as a coating on a glass surface. This organosilicone film functions effectively as a luminescent down-shifting (LDS) material. Additionally, the presence of methyl groups and voids in the structure imparts a low refractive index, allowing it to serve as an anti-reflective (AR) layer. Optical and structural analyses on organosilicone-coated glass samples were conducted, and the dual-functional layer was applied to the glass cover of a perovskite solar panel to evaluate its performance. The coating not only enhanced light transmission as an AR layer but also converted UV light into blue light, which was absorbed by the solar cell. The results indicated improved solar panel performance, particularly in short-circuit current (Isc), external quantum efficiency (EQE) in the UV wavelength range, and overall efficiency. Overall, this material is a promising candidate for solar panel applications owing to maximized UV absorption for LDS, preserved transparency of the top cover glass, and room-temperature gelation, which facilitates repair of the dual-functional coating. Full article
(This article belongs to the Section Gel Analysis and Characterization)
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11 pages, 576 KB  
Article
Changes in NT-proBNP Levels According to SGLT2 Inhibitor Use in Patients Hospitalized for Acute Heart Failure Decompensation: A Prospective Cohort Study
by Petros N. Fountoulakis, Panagiotis Theofilis, Evangelos Oikonomou, Gerasimos Siasos, Zoi Pallantza, Martha Bounta, Paschalis Karakasis, Panayotis K. Vlachakis, Konstantinos Tsioufis and Dimitris Tousoulis
Life 2026, 16(4), 621; https://doi.org/10.3390/life16040621 - 8 Apr 2026
Abstract
Introduction: Sodium-glucose cotransporter-2 inhibitors (SGLT2is) have proven beneficial in chronic heart failure (HF) across a wide range of left ventricular ejection fractions (LVEFs). Emerging data suggests that these benefits may extend to acute HF decompensation through enhanced decongestion. Purpose: To investigate changes [...] Read more.
Introduction: Sodium-glucose cotransporter-2 inhibitors (SGLT2is) have proven beneficial in chronic heart failure (HF) across a wide range of left ventricular ejection fractions (LVEFs). Emerging data suggests that these benefits may extend to acute HF decompensation through enhanced decongestion. Purpose: To investigate changes in N-terminal pro-B-type natriuretic peptide (NT-proBNP) levels according to SGLT2i use among patients hospitalized for acute HF decompensation. Methods: In this prospective cohort study, consecutive patients hospitalized for HF decompensation were enrolled. Demographics, comorbidities, and cardiovascular risk factors were recorded. Participants were classified into three groups: Group 1—No SGLT2i use or discontinuation; Group 2—Prior SGLT2i use and continuation; Group 3—SGLT2i-naïve with initiation during hospitalization. NT-proBNP was measured on admission and discharge. Results: A total of 159 patients (median age 79 years, 64.8% male) were included. Group 1 patients exhibited negligible changes in NT-proBNP, whereas those continuing or newly initiating SGLT2i demonstrated significant reductions (absolute change: 506 [8792] pg/mL vs. −5610 [9461] pg/mL vs. −3602 [4409] pg/mL, p = 0.001, percentage change: −2.1 [63.4]% vs. −30.3 [39.0]% vs. −38.3 [41.5]%, p = 0.001). Multivariable regression confirmed that SGLT2i continuation or initiation independently predicted greater NT-proBNP reduction. Conclusions: NT-proBNP levels were significantly reduced among patients with decompensated HF treated with SGLT2i, with the greatest reduction in treatment-naïve patients. These findings highlight the potential role of SGLT2i even during acute HF hospitalization. Full article
(This article belongs to the Section Physiology and Pathology)
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18 pages, 2716 KB  
Article
Reducing Port Container Congestion with Reinforcement Learning: The Serial Mediation Role of Operational Learning Stability and Logistics Efficiency
by Md. Mizanur Rahman, Jianqiang Fan, Edvard Tijan and Umma Al Fateha
J. Mar. Sci. Eng. 2026, 14(7), 687; https://doi.org/10.3390/jmse14070687 - 7 Apr 2026
Abstract
Container congestion remains a persistent operational challenge in seaports because berth, yard, and gate processes are tightly coupled, demand is volatile, and control actions often operate under delayed feedback. Reinforcement learning (RL) is increasingly proposed for adaptive terminal decision support, yet the literature [...] Read more.
Container congestion remains a persistent operational challenge in seaports because berth, yard, and gate processes are tightly coupled, demand is volatile, and control actions often operate under delayed feedback. Reinforcement learning (RL) is increasingly proposed for adaptive terminal decision support, yet the literature still says little about the mechanism through which RL may reduce congestion in practice. This study therefore develops a simulation-based mechanism framework in which RL improves congestion outcomes primarily by increasing Operational Learning Stability (OLStab), defined here as the consistency and governability of learning-enabled operational decisions under variability and disruption. A queueing-based, gate-focused terminal simulator is used as the data-generating process, with gate congestion treated as a reduced-form proxy for broader terminal congestion pressure. The statistical layer is interpreted cautiously as an internal mechanism consistency check within synthetic data rather than as empirical causal identification. Results show that RL is strongly associated with higher OLStab and that OLStab is the dominant pathway linking RL to lower congestion pressure in the simulated environment. Logistics Efficiency (LE) is directionally consistent with congestion reduction in bivariate analysis but adds limited incremental mediation once OLStab is jointly modeled. The theorized moderation by Decision Latency Sensitivity (DLS) is not robustly recovered within the examined latency range. Overall, the study contributes a more bounded explanation of how RL may reduce congestion in a designed gate-focused terminal control environment and highlights learning stability as a practical screening criterion for future digital twin and pilot deployment studies. Full article
(This article belongs to the Special Issue Maritime Ports Energy Infrastructure)
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26 pages, 1396 KB  
Review
The Role and Significance of Rail Transport in the Decarbonisation of the EU Transport Sector
by Mladen Bošnjaković, Robert Santa and Maja Čuletić Čondrić
Smart Cities 2026, 9(4), 64; https://doi.org/10.3390/smartcities9040064 - 7 Apr 2026
Abstract
Globally, the transport sector accounts for almost a quarter of CO2 emissions from fuel combustion and generates large amounts of pollutants, placing significant pressure on the environment and human health. By 2050, the European Green Deal requires a 90% reduction in transport-related [...] Read more.
Globally, the transport sector accounts for almost a quarter of CO2 emissions from fuel combustion and generates large amounts of pollutants, placing significant pressure on the environment and human health. By 2050, the European Green Deal requires a 90% reduction in transport-related emissions, making sustainability necessary across all modes of transport. Based on the relevant literature, this study examines the role and potential of railways in decarbonising the EU transport sector. Railway is highly efficient, consuming just 1.9% of transport sector energy while handling 16.9% of freight and 5.1% of passenger transport in the EU, yet is responsible for only 0.4% of total emissions. According to studies, greenhouse gas emissions can be reduced by improving energy efficiency, using low-carbon or renewable energy, and expanding train electrification. The greatest potential for decarbonisation lies in a modal shift to rail. However, this requires significant infrastructure investment: raising line speeds to at least 160 km/h, expanding networks, building terminals, digitalisation, and alignment with TEN-T standards. Although the EU supports the modal shift with funding programmes, the transition is not progressing as expected—the share of road freight transport increased from 74% in 2013 to 78% in 2023. Stronger investment is needed in Member States’ national policies for the development and modernisation of railways. The authors developed a Path Evaluation Matrix (PEM), a quantitative decision framework integrating the fields of energy, transport, politics, and economics. The PEM results indicate that BEMU (battery electric multiple units) is optimal for 68% of secondary lines in south-eastern Europe. Full article
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24 pages, 3818 KB  
Article
A Method for Estimating the State of Health of Aviation Lithium-Ion Batteries Based on an IPSO-ELM Model
by Zhaoyang Zeng, Qingyu Zhu, Changqi Qu, Yan Chen, Zhaoyan Fang, Haochen Wang and Long Xu
Energies 2026, 19(7), 1797; https://doi.org/10.3390/en19071797 - 7 Apr 2026
Abstract
Accurate assessment of the State of Health (SOH) is critical for battery management systems in aviation. As a step towards this goal, this study presents a proof-of-concept for a novel SOH estimation method based on an Improved Particle Swarm Optimization-Extreme Learning Machine (IPSO-ELM) [...] Read more.
Accurate assessment of the State of Health (SOH) is critical for battery management systems in aviation. As a step towards this goal, this study presents a proof-of-concept for a novel SOH estimation method based on an Improved Particle Swarm Optimization-Extreme Learning Machine (IPSO-ELM) model, validated under controlled laboratory cycling conditions. Although traditional Extreme Learning Machines (ELM) are widely used due to their fast computation and good generalization, their random parameter initialization often leads to unstable convergence and limited accuracy. To address these limitations, this paper proposes a novel SOH estimation method based on an Improved Particle Swarm Optimization (IPSO) algorithm to optimize the key parameters of ELM. Three health indicators (HI)—constant-current charging time, equal-voltage-drop discharge time, and average discharge voltage—were extracted from charge–discharge curves as model inputs. The IPSO algorithm dynamically adjusts the inertia weight, introduces a constriction factor and a termination counter to enhance global search capability and avoid local optima. Experimental results on open-source datasets (B005, B007, B0018) and laboratory datasets (A001, A002) demonstrate that the proposed IPSO-ELM model achieves a Root-Mean-Square Error (RMSE) below 0.7% and a Mean Absolute Percentage Error (MAPE) below 0.5%. Compared with standard ELM and PSO-ELM models, it significantly outperforms them in accuracy (e.g., for B0018, RMSE is reduced to 0.21% and MAPE to 0.14%), convergence speed, and robustness, establishing a foundation for future development of aviation-ready SOH estimators. Full article
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21 pages, 6888 KB  
Article
Revealing GRK5 Activation Features by Interpretable Machine Learning and Molecular Dynamics Simulation
by Yuanpeng Song, Ming Kong, Fuhui Zhang and Xuemei Pu
Int. J. Mol. Sci. 2026, 27(7), 3329; https://doi.org/10.3390/ijms27073329 - 7 Apr 2026
Abstract
G protein-coupled receptor kinase 5 (GRK5) is an important therapeutic target involving cardiovascular diseases, cancer, and inflammatory disorders. However, the features of its activation as an essential function regulation process have been poorly understood, limiting related drug development. The work utilizes a molecular [...] Read more.
G protein-coupled receptor kinase 5 (GRK5) is an important therapeutic target involving cardiovascular diseases, cancer, and inflammatory disorders. However, the features of its activation as an essential function regulation process have been poorly understood, limiting related drug development. The work utilizes a molecular dynamics simulation coupled with an interpretable machine learning model to identify key structure and dynamics determinants distinguishing the active and inactive states of GRK5. Benefiting from the unbiased and data-driven framework, the work reveals that the active site tether (AST) is a dominant activation-associated feature, acting as a conformational switch that regulates kinase domain movements. Beyond this canonical element, we also uncover two previously underappreciated structure modules contributing to GRK5 activation, such as the coupling interaction between the α10/α11 helix interface with the N-terminal lipid-binding domain (NLBD) in the active state, and the α5 helix region that facilitates large-scale RH domain reorientation. Conformation dynamics analyses further indicate that GRK5 activation involves disruption of the interdomain interactions and interaction coupling between AST, αN-helix, kinase domain N-lobe, NLBD, and α10/α11 hinge. These observations provide valuable insights into understanding the GPK5 activation mechanism and also highlight the power of machine learning in capturing functionally conformational changes, and in turn offering a methodological guideline for the studying of the protein function mechanism. Full article
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14 pages, 841 KB  
Article
Genetic Origin of AHAS2 Genes in Brassica Allotetraploids and Association of Its Orthologs with Agronomic Traits in B. napus
by Yani Zhang, Yaxing Yang, Qiaofeng Xie, Tao Chen, Ziyue Hong, Zhaoxin Hu and Shengwu Hu
Plants 2026, 15(7), 1126; https://doi.org/10.3390/plants15071126 - 7 Apr 2026
Abstract
Acetohydroxy acid synthase (AHAS) are key targets for herbicide resistance breeding in Brassica crops, yet the evolutionary origin and functional role of AHAS2 genes in Brassica napus (AACC) and B. carinata (BBCC) remain poorly understood. Here, we investigated the distribution, ancestry, and agronomic [...] Read more.
Acetohydroxy acid synthase (AHAS) are key targets for herbicide resistance breeding in Brassica crops, yet the evolutionary origin and functional role of AHAS2 genes in Brassica napus (AACC) and B. carinata (BBCC) remain poorly understood. Here, we investigated the distribution, ancestry, and agronomic trait associations of AHAS2 across 227 accessions representing six Brassica species. Bra.AHAS2 was amplified in 21 of 42 B. rapa (AA) accessions, and Bol.AHAS2 in 10 of 15 B. oleracea (CC) accessions. In B. napus, BnaA.AHAS2 and BnaC.AHAS2 were amplified in 73/131 and 30/131 accessions, respectively, with 19 accessions showing amplification of both homologs. All seven B. carinata accessions amplified BcaC.AHAS2. No AHAS2 homologs were amplified in three B. nigra (BB) or 29 B. juncea (AABB) accessions. Phylogenetic and gene structure analyses revealed that BnaA.AHAS2 (in B. napus) originated from Bra.AHAS2 of B. rapa, whereas BnaC.AHAS2 (in B. napus) and BcaC.AHAS2 (in B. carinata) derived from Bol.AHAS2 of B. oleracea. Association analysis showed the amplification of BnaA.AHAS2 or BnaC.AHAS2 was not associated with tribenuron-methyl resistance. However, amplification of BnaA.AHAS2 was significantly associated with reduced plant height, branching height, silique number on the terminal raceme, seed yield per plant, and thousand-seed weight in B. napus. Furthermore, haplotypes of BnaA.AHAS2 (BnaA05g03070D) were significantly associated with eicosenoic acid content, oleic acid content, flowering time, and cadmium translocation. Collectively, these findings resolve the diploid progenitor origins of AHAS2 in Brassica allotetraploids and reveal previously unrecognized associations of AHAS2 with agronomic and stress-related traits, offering valuable insights for molecular breeding in oilseed Brassica crops. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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28 pages, 3145 KB  
Review
Exploiting Selective Position Labeling to Unveil the Hidden Complexity of Terminomics
by Yuqing Deng, Minghao Li, Peicheng Lu and Bingbing Shi
Molecules 2026, 31(7), 1216; https://doi.org/10.3390/molecules31071216 - 7 Apr 2026
Abstract
Selective protein terminal labeling has become essential for system-wide studies of proteolytic mechanisms in disease. These methods enable precise tracking of cleavage dynamics, protease interactions, and cellular networks, offering transformative potential for proteolytic event analysis. This review explores recent advances in N-/C-terminal modification [...] Read more.
Selective protein terminal labeling has become essential for system-wide studies of proteolytic mechanisms in disease. These methods enable precise tracking of cleavage dynamics, protease interactions, and cellular networks, offering transformative potential for proteolytic event analysis. This review explores recent advances in N-/C-terminal modification strategies, specifically for the applications in terminomics—the field focused on protein termini characterization. While protein termini provide valuable insights into functional proteome states, their low abundance in complex samples demands highly selective labeling approaches. We evaluate modern chemical and chemoenzymatic methods that leverage engineered chemical reactivity thresholds or enzymatic precision for site-specific modifications. Emerging strategies show enhanced substrate adaptability, reaction efficiency, and workflow compatibility, enabling broader applications in terminome studies. Full article
(This article belongs to the Collection Chemical Proteomics Research)
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17 pages, 8164 KB  
Article
Gli1+ Cells Exhibit Clonogenicity and Slow-Cycling Features at the Temporomandibular Joint (TMJ) Enthesis–Condyle Interface
by Rafael Correia Cavalcante, Honghao Zhang, Peter X. Ma and Yuji Mishina
Int. J. Mol. Sci. 2026, 27(7), 3324; https://doi.org/10.3390/ijms27073324 - 7 Apr 2026
Abstract
The temporomandibular joint (TMJ) relies on specialized progenitor cells for tissue maintenance and repair. We characterized TMJ-derived progenitor cells in mice and investigated the role of Evc2-mediated Hedgehog signaling. Progenitor cells from the anterior TMJ exhibited greater colony-forming capacity and an elongated [...] Read more.
The temporomandibular joint (TMJ) relies on specialized progenitor cells for tissue maintenance and repair. We characterized TMJ-derived progenitor cells in mice and investigated the role of Evc2-mediated Hedgehog signaling. Progenitor cells from the anterior TMJ exhibited greater colony-forming capacity and an elongated morphology, while posterior cells were cuboidal, highlighting regional heterogeneity. TMJ-derived progenitors demonstrated multipotency, differentiating into osteogenic and chondrogenic lineages. Gli1-expressing, slow-cycling cells localized to the ligament attachment regions, initially accumulating there and not overlapping with specialized cells (Col1+ cells). Conditional Evc2 disruption in Gli1-expressing cells paradoxically augmented expression of Gli1 and mechanosensors (Yap, Wwtr1, Piezo1), and produced more confluent, rapidly expanding colonies. We hypothesize that these colonies are primarily composed of transit amplifying cells (TACs), which may proliferate robustly but face challenges in terminal differentiation. These results reveal critical roles for EVC2 and regional progenitor cell diversity in TMJ regenerative biology and suggest that targeting cell signaling and mechanical factors may inform novel strategies for TMJ disorder therapies. Full article
(This article belongs to the Special Issue Recent Advances in Adult Stem Cell Research)
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18 pages, 2706 KB  
Article
Conserved Metanephric Kidney Development and Genome Methylation in Red-Eared Slider Turtle (Trachemys scripta elegans)
by Bing Jia, Mohamed Milad, Hannah C. Boehler, Adam Guerra, Joshua Mowry, Jessica Hiley, James Kasen Lisonbee, Michael Hafen and Troy Camarata
J. Dev. Biol. 2026, 14(2), 16; https://doi.org/10.3390/jdb14020016 - 7 Apr 2026
Abstract
Mammals and reptiles possess a metanephric kidney as the terminal renal organ for homeostasis of solutes and waste products. The development of the metanephric kidney has primarily been studied in mammalian model systems. Little is known about the conservation of metanephric kidney formation [...] Read more.
Mammals and reptiles possess a metanephric kidney as the terminal renal organ for homeostasis of solutes and waste products. The development of the metanephric kidney has primarily been studied in mammalian model systems. Little is known about the conservation of metanephric kidney formation in non-mammalian species such as reptiles. Uniquely, reptiles maintain kidney progenitor cell populations throughout life and continually develop new nephrons, the functional unit of the kidney. The red-eared slider turtle, Trachemys scripta elegans, was utilized to investigate the conservation of reptilian metanephric kidney development. The nephron progenitor cell (NPC) marker, Six2, was detected in whole-mount turtle kidneys in a similar pattern to mammals. However, there were differences in progenitor cell niche morphology where turtle NPC populations formed distinct elongated rows instead of the rosette-like morphology found in the mouse. The pattern of NPC populations in the embryonic turtle kidney was maintained in the adult turtle. Whole-genome bisulfite sequencing was performed on cortical tissue containing the NPC populations from adult turtle kidneys and compared to those of adult mice. Significant conservation of gene methylation was detected in adult cortical tissue between the two species, although unique signatures were detected in turtle samples related to DNA repair and β-catenin signaling. This suggests a high level of conservation of metanephric kidney development at the genetic level. Full article
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