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Keywords = thymic epithelial tumour

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12 pages, 1510 KB  
Opinion
Decoding Uncertainty Quantification for Oncology—An Illustration Using Radiomics
by Florian van Daalen, Balu Krishna Sasidharan, C. Praveenraj, Amal Joseph Varghese, Andre Dekker, Leonard Wee, Rianne Fijten, Aparna Irodi and Hannah Mary T. Thomas
Diagnostics 2026, 16(5), 700; https://doi.org/10.3390/diagnostics16050700 - 27 Feb 2026
Viewed by 607
Abstract
While AI models are developed in oncology for predicting different clinical outcomes, the focus is often on accuracy and many fail to adequately communicate the degree of certainty in these predictions. To improve clinical decision-making in oncology, this work introduces the idea of [...] Read more.
While AI models are developed in oncology for predicting different clinical outcomes, the focus is often on accuracy and many fail to adequately communicate the degree of certainty in these predictions. To improve clinical decision-making in oncology, this work introduces the idea of uncertainty quantification (UQ) for AI models using an illustrative example. Our goal is to help radiologists and oncologists better understand prediction reliability by integrating UQ. Our illustrative example is a Radiomics Risk Model (RM) for Thymic Epithelial Tumours, developed to provide a basic understanding of the mechanism to evaluate the degree to which individual patient data matches the training set. The study demonstrates the concept of measuring uncertainty in artificial intelligence (AI) models using a simple example of distance measures within the feature space and example cases where uncertainty is addressed with probable causes. The paper highlights specifically where the clinicians may need more information to improve their confidence in their AI-driven assessments for clinical diagnostics. Full article
(This article belongs to the Special Issue Explainable Machine Learning in Clinical Diagnostics)
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15 pages, 1909 KB  
Systematic Review
The Value of Baseline [18F]FDG-PET in Predicting the Progression-Free Survival in Patients with Thymic Epithelial Tumours: A Systematic Review and Meta-Analysis
by Alberto Miceli, Maria Librando, Francesco Dondi, Lorenzo Jonghi-Lavarini, Adriana D’Antonio, Antonio Mura, Anna Giulia Nappi, Guido Rovera, Maria Silvia De Feo, Giulia Santo and Francesco Lanfranchi
Diagnostics 2025, 15(19), 2458; https://doi.org/10.3390/diagnostics15192458 - 26 Sep 2025
Cited by 1 | Viewed by 1098
Abstract
Background/Objectives: [18F]FDG-PET is often used for staging thymic epithelial tumours (TETs). However, its prognostic role remains uncertain. The aim of this present systematic review and meta-analysis is to assess the prognostic value of baseline [18F]FDG-PET-derived semiquantitative parameters in predicting [...] Read more.
Background/Objectives: [18F]FDG-PET is often used for staging thymic epithelial tumours (TETs). However, its prognostic role remains uncertain. The aim of this present systematic review and meta-analysis is to assess the prognostic value of baseline [18F]FDG-PET-derived semiquantitative parameters in predicting progression-free survival (PFS) in patients with TETs. Methods: A systematic review and meta-analysis were conducted according to PRISMA guidelines. PubMed, Embase, and Scopus databases were searched up to 30 May 2025. Studies evaluating the prognostic impact of [18F]FDG-PET parameters on PFS in TETs were included. Pooled hazard ratios (HRs) with 95% confidence intervals (CIs) were calculated. Results: Six retrospective studies involving 593 patients were included. Maximum standardized uptake value (SUVmax), analysed as a continuous variable in four studies, significantly predicted worse PFS (HR: 1.18, 95% CI: 1.08–1.29, p < 0.001), with high inter-study heterogeneity (I2 = 79.7%). When dichotomized (two studies), higher SUVmax was associated with significantly poorer PFS (HR: 9.00, 95% CI: 2.93–27.71). Similarly, mean SUV (SUVmean) as a continuous predictor was also significantly associated with impaired PFS (HR: 1.41, 95% CI: 1.25–1.59), but only two studies assessed this parameter. Conversely, metabolic tumour volume (MTV) and total lesion glycolysis (TLG), both assessed as continuous prognosticators, did not show a significant prognostic value. Notably, in both MTV and TLG analyses, two studies contributed a weight of 0%, reflecting limited precision and highlighting the need for larger data. Conclusions: Baseline [18F]FDG-PET parameters such as SUVmax and SUVmean showed a potential prognostic value in patients with TETs. However, these results are based on a limited number of retrospective studies with significant heterogeneity. Prospective multicentre investigations are necessary to confirm the potential role of [18F]FDG-PET for risk stratification in TETs. Full article
(This article belongs to the Special Issue Application of PET/CT in Diagnosis and Treatment of Cancers)
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11 pages, 1544 KB  
Article
Unsolved Issues in Thymic Epithelial Tumour Stage Classification: The Role of Tumour Dimension
by Carolina Sassorossi, Pietro Bertoglio, Filippo Lococo, Gloria Santoro, Elisa Meacci, Dania Nachira, Maria Teresa Congedo, Jury Brandolini, Matteo Petroncini, Adriana Nocera, Diepriye Charles-Davies, Piergiorgio Solli, Stefano Margaritora and Marco Chiappetta
Diagnostics 2023, 13(22), 3468; https://doi.org/10.3390/diagnostics13223468 - 17 Nov 2023
Cited by 5 | Viewed by 1779
Abstract
According to the different classifications now in use, thymic tumours are staged by the extent of local invasiveness, and tumour size is not included as a major determinant for the T category. The aim of this double-site retrospective study is to analyse the [...] Read more.
According to the different classifications now in use, thymic tumours are staged by the extent of local invasiveness, and tumour size is not included as a major determinant for the T category. The aim of this double-site retrospective study is to analyse the correlation between tumour dimension and overall survival (OS) in patients who underwent surgical treatment. From January 2000 to December 2020, patients with thymic epithelial tumours who underwent surgical resection were included in this study. Data from a total of 332 patients were analysed. Five- and ten-year overall survival (5–10 YOS) was 89.26% and 87.08%, respectively, while five- and ten-year disease-free survival (DFS) was 88.12% and 84.2%, respectively. Univariate analysis showed a significant correlation between male sex (p-value 0.02), older age (p-value < 0.01), absence of myasthenia gravis (p-value < 0.01), increase in pTNM (pathological Tumor Node Metastasis) (p-value 0.03) and increase in the number of infiltrated organs (p-value 0.02) with an increase in tumour dimension. Tumour dimension alone was not effective in the prediction of DFS and OS, both when considered as a continuous variable and when considered with a cut-off of 3 and 5 cm. However, with multivariate analysis, it was effective in predicting OS in the aforementioned conditions (p-value < 0.01). Moreover, multivariate analysis was also used in the thymoma and Masaoka I subgroups. In our experience, the role of tumour dimension as a descriptor of the T parameter of the TNM (Tumor Node Metastasis) staging system seemed to be useful in improving this system. Full article
(This article belongs to the Section Pathology and Molecular Diagnostics)
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12 pages, 1119 KB  
Review
Is PET/CT Able to Predict Histology in Thymic Epithelial Tumours? A Narrative Review
by Marco Chiappetta, Paolo Mendogni, Margherita Cattaneo, Jessica Evangelista, Piero Farina, Daniele Antonio Pizzuto, Salvatore Annunziata, Angelo Castello, Maria Teresa Congedo, Diomira Tabacco, Carolina Sassorossi, Massimo Castellani, Mario Nosotti, Stefano Margaritora and Filippo Lococo
Diagnostics 2023, 13(1), 98; https://doi.org/10.3390/diagnostics13010098 - 29 Dec 2022
Cited by 7 | Viewed by 3752
Abstract
Background: The usefulness of 18FDG PET/CT scan in the evaluation of thymic epithelial tumours (TETs) has been reported by several authors, but data are still limited and its application in clinical practice is far from being defined. Methods: We performed a narrative [...] Read more.
Background: The usefulness of 18FDG PET/CT scan in the evaluation of thymic epithelial tumours (TETs) has been reported by several authors, but data are still limited and its application in clinical practice is far from being defined. Methods: We performed a narrative review of pertinent literature in order to clarify the role of 18FDG PET/CT in the prediction of TET histology and to discuss clinical implications and future perspectives. Results: There is only little evidence that 18FDG PET/CT scan may distinguish thymic hyperplasia from thymic epithelial tumours. On the other hand, it seems to discriminate well thymomas from carcinomas and, even more, to predict the grade of malignancy (WHO classes). To this end, SUVmax and other PET variables (i.e., the ratio between SUVmax and tumour dimensions) have been adopted, with good results. Finally, however promising, the future of PET/CT and theranostics in TETs is far from being defined; more robust analysis of imaging texture on thymic neoplasms, as well as new exploratory studies with “stromal PET tracers,” are ongoing. Conclusions: PET may play a role in predicting histology in TETs and help physicians in the management of these insidious malignancies. Full article
(This article belongs to the Section Pathology and Molecular Diagnostics)
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18 pages, 1160 KB  
Article
Targeted Next-Generation Sequencing of Thymic Epithelial Tumours Revealed Pathogenic Variants in KIT, ERBB2, KRAS, and TP53 in 30% of Thymic Carcinomas
by Adam Szpechcinski, Malgorzata Szolkowska, Sebastian Winiarski, Urszula Lechowicz, Piotr Wisniewski and Magdalena Knetki-Wroblewska
Cancers 2022, 14(14), 3388; https://doi.org/10.3390/cancers14143388 - 12 Jul 2022
Cited by 17 | Viewed by 4553
Abstract
A better understanding of the molecular pathogenesis of thymic epithelial tumours (TETs) could revolutionise their treatment. We evaluated thymomas and thymic carcinomas by next-generation sequencing (NGS) of somatic or germline single nucleotide variants (SNVs) in genes commonly mutated in solid tumours. In total, [...] Read more.
A better understanding of the molecular pathogenesis of thymic epithelial tumours (TETs) could revolutionise their treatment. We evaluated thymomas and thymic carcinomas by next-generation sequencing (NGS) of somatic or germline single nucleotide variants (SNVs) in genes commonly mutated in solid tumours. In total, 19 thymomas and 34 thymic carcinomas were analysed for nonsynonymous SNVs in 15 genes by targeted NGS (reference genome: hg19/GRCh37). Ten SNVs in TP53 (G154V, R158P, L194H, R267fs, R273C, R306 *, Q317 *), ERBB2 (V773M), KIT (L576P), and KRAS (Q61L) considered somatic and pathogenic/likely pathogenic were detected in 10 of 34 (29.4%) thymic carcinomas. No somatic SNVs confirmed as pathogenic/likely pathogenic were found in thymomas. Rare SNVs of uncertain or unknown functional and clinical significance, to our knowledge not reported previously in TETs, were found in ERBB2 (S703R), KIT (I690V), and FOXL2 (P157S) in 3 of 19 (16%) thymomas. The most frequent germline SNVs were TP53 P72R (94% TETs), ERBB2 I655V (40% TETs), and KIT M541L (9% TETs). No significant difference in median disease-free survival (DFS) was found between thymic carcinoma patients with and without pathogenic SNVs (p = 0.190); however, a trend toward a longer DFS was observed in the latter (16.0 vs. 30.0 months, respectively). In summary, NGS analysis of TETs revealed several SNVs in genes related to the p53, AKT, MAPK, and K-Ras signalling pathways. Thymic carcinomas showed greater genetic dysregulation than thymomas. The germline and rare SNVs of uncertain clinical significance reported in this study add to the number of known genetic alterations in TETs, thus extending our molecular understanding of these neoplasms. Druggable KIT alterations in thymic carcinomas have potential as therapeutic targets. Full article
(This article belongs to the Special Issue Advances in Thymic Tumors)
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12 pages, 1087 KB  
Review
Current Roles of PET/CT in Thymic Epithelial Tumours: Which Evidences and Which Prospects? A Pictorial Review
by Filippo Lococo, Marco Chiappetta, Elizabeth Katherine Anna Triumbari, Jessica Evangelista, Maria Teresa Congedo, Daniele Antonio Pizzuto, Debora Brascia, Giuseppe Marulli, Salvatore Annunziata and Stefano Margaritora
Cancers 2021, 13(23), 6091; https://doi.org/10.3390/cancers13236091 - 3 Dec 2021
Cited by 16 | Viewed by 6434
Abstract
Background: The use of 18F FDG PET/CT scan in thymic epithelial tumours (TET) has been reported in the last two decades, but its application in different clinical settings has not been clearly defined. Methods: We performed a pictorial review of pertinent literature [...] Read more.
Background: The use of 18F FDG PET/CT scan in thymic epithelial tumours (TET) has been reported in the last two decades, but its application in different clinical settings has not been clearly defined. Methods: We performed a pictorial review of pertinent literature to describe different roles and applications of this imaging tool to manage TET patients. Finally, we summarized future prospects and potential innovative applications of PET in these neoplasms. Results: 18FFDG PET/CT scan may be of help to distinguish thymic hyperplasia from thymic epithelial tumours but evidences are almost weak. On the contrary, this imaging tool seems to be very performant to predict the grade of malignancy, to a lesser extent pathological response after induction therapy, Masaoka Koga stage of disease and long-term prognosis. Several other radiotracers have some application in TETs but results are limited and almost controversial. Finally, the future of PET/CT and theranostics in TETs is still to be defined but more detailed analysis of metabolic data (such as texture analysis applied on thymic neoplasms), along with promising preclinical and clinical results from new “stromal PET tracers”, leave us an increasingly optimistic outlook. Conclusions: PET plays different roles in the management of thymic epithelial tumours, and its applications may be of help for physicians in different clinical settings. Full article
(This article belongs to the Special Issue Thymic Tumors: From Diagnosis to Treatment)
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24 pages, 11443 KB  
Article
Short-Form Thymic Stromal Lymphopoietin (sfTSLP) Is the Predominant Isoform Expressed by Gynaecologic Cancers and Promotes Tumour Growth
by Loucia Kit Ying Chan, Tat San Lau, Kit Ying Chung, Chit Tam, Tak Hong Cheung, So Fan Yim, Jacqueline Ho Sze Lee, Ricky Wai Tak Leung, Jing Qin, Yvonne Yan Yan Or, Kwok Wai Lo and Joseph Kwong
Cancers 2021, 13(5), 980; https://doi.org/10.3390/cancers13050980 - 26 Feb 2021
Cited by 12 | Viewed by 4519
Abstract
Thymic stromal lymphopoietin (TSLP) is an epithelial cell derived cytokine belonging to the IL-7 family and a key initiator of allergic inflammation. Two main isoforms of TSLP, classified as long- (lfTSLP) and short-form (sfTSLP), have been reported in human, but their expression patterns [...] Read more.
Thymic stromal lymphopoietin (TSLP) is an epithelial cell derived cytokine belonging to the IL-7 family and a key initiator of allergic inflammation. Two main isoforms of TSLP, classified as long- (lfTSLP) and short-form (sfTSLP), have been reported in human, but their expression patterns and role(s) in cancers are not yet clear. mRNA expression was examined by isoform-specific RT-PCR and RNA in situ hybridisation. Epigenetic regulation was investigated by chromatin immunoprecipitation-PCR and bisulfite sequencing. Tumour progression was investigated by gene overexpression, cell viability assay, cancer organoid culture and transwell invasion. Signals were investigated by proteome profiler protein array and RNA-sequencing. With the use of isoform-specific primers and probes, we uncovered that only sfTSLP was expressed in the cell lines and tumour tissues of human ovarian and endometrial cancers. We also showed the epigenetic regulation of sfTSLP: sfTSLP transcription was regulated by histone acetylation at promoters in ovarian cancer cells, whereas silencing of the sfTSLP transcripts was regulated by promoter DNA methylation in endometrial cancer cells. In vitro study showed that ectopically overexpressing sfTSLP promoted tumour growth but not invasion. Human phosphokinase array application demonstrated that the sfTSLP overexpression activated phosphorylation of multiple intracellular kinases (including GSK3α/β, AMPKα1, p53, AKT1/2, ERK1/2 and Src) in ovarian cancer cells in a context-dependent manner. We further investigated the impact of sfTSLP overexpression on transcriptome by RNA-sequencing and found that EFNB2 and PBX1 were downregulated in ovarian and endometrial cancer cells, suggesting their role in sfTSLP-mediated tumour growth. In conclusion, sfTSLP is predominantly expressed in ovarian and endometrial cancers and promotes tumour growth. Full article
(This article belongs to the Section Molecular Cancer Biology)
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