Topic Editors

Department of Cell Biology, University of South Florida, 4202 E Fowler Ave, Tampa, FL 33620, USA
Dr. Adnan Sljoka
RIKEN, Center for Advanced Intelligence Project, Tokyo 103-0027, Japan

Conformational Landscape and Dynamics of G Protein-Coupled Receptors

Abstract submission deadline
closed (15 January 2022)
Manuscript submission deadline
closed (31 March 2022)
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10281

Topic Information

Dear Colleagues,

The recent renaissance in X-ray Crystallograpy and Cry-electron Microscopy has led to resolution of many 3-dimensional structures of GPCRs which has significantly elevated our understanding of GPCR activations and functions. This has prompted the development of structure based GPCR virtual drug screening platforms, leading to several candidate agents entering the clinic trials. However, these structure determination tools present limitations as they report on single static states, requirements of thermo-stabilization and homogenous processing which imposes a challenge to gain insights into the continuous conformational transition, allostery and dynamical character of GPCRs. In contrast, to fully understand the receptor function it is critical to probe a complex energy conformational landscape which exhibits the receptor structural heterogeneity and from which the functional diversity is derived. Recently many approaches have accordingly been innovated or upgraded towards this goal.

This Special Issue of Membranes will highlight the significance of gaining insights into the conformational landscape and dynamics of the GPCRs and the state-of-arts approaches that are being utilized for these investigations. It welcomes research articles, opinions, and reviews related to any approaches in advancing our comprehension of the GPCR conformation, allostery, dynamics and signaling, which includes but not limited to nuclear magnetic resonance, mass spectroscopy, electron paramagnetic resonance, single molecule fluorescence, bioluminescent resonance energy transfer, molecular dynamics simulations and other computational methods as well as any derived tactics from these techniques, aiming for progressing our understanding to the plasticity of the GPCR and its functions.

Dr. Libin Ye
Dr. Adnan Sljoka
Topics Editors

Keywords

  • membrane proteins                                                    
  • G protein-coupled receptors
  • conformational ensemble
  • dynamics
  • biophysics
  • structural heterogeneity
  • plasticity
  • signal transduction
  • molecular simulations

Participating Journals

Journal Name Impact Factor CiteScore Launched Year First Decision (median) APC
Membranes
membranes
3.3 6.1 2011 16.6 Days CHF 2200
International Journal of Molecular Sciences
ijms
4.9 8.1 2000 18.1 Days CHF 2900

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Published Papers (3 papers)

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15 pages, 4904 KiB  
Article
Dexmedetomidine-Induced Aortic Contraction Involves Transactivation of the Epidermal Growth Factor Receptor in Rats
by Soo Hee Lee, Seong-Chun Kwon, Seong-Ho Ok, Seung Hyun Ahn, Sung Il Bae, Ji-Yoon Kim, Yeran Hwang, Kyeong-Eon Park, Mingu Kim and Ju-Tae Sohn
Int. J. Mol. Sci. 2022, 23(8), 4320; https://doi.org/10.3390/ijms23084320 - 13 Apr 2022
Cited by 3 | Viewed by 1823
Abstract
In this study, we examined whether aortic contraction, induced by the alpha-2 adrenoceptor agonist dexmedetomidine, is involved in the transactivation of the epidermal growth factor receptor (EGFR) in isolated endothelium-denuded rat aortas. Additionally, we aimed to elucidate the associated underlying cellular mechanisms. The [...] Read more.
In this study, we examined whether aortic contraction, induced by the alpha-2 adrenoceptor agonist dexmedetomidine, is involved in the transactivation of the epidermal growth factor receptor (EGFR) in isolated endothelium-denuded rat aortas. Additionally, we aimed to elucidate the associated underlying cellular mechanisms. The effects of the alpha-2 adrenoceptor inhibitor rauwolscine, EGFR tyrosine kinase inhibitor AG1478, Src kinase inhibitors PP1 and PP2, and matrix metalloproteinase inhibitor GM6001 on EGFR tyrosine phosphorylation and c-Jun NH2-terminal kinase (JNK) phosphorylation induced by dexmedetomidine in rat aortic smooth muscles were examined. In addition, the effects of these inhibitors on dexmedetomidine-induced contraction in isolated endothelium-denuded rat aorta were examined. Dexmedetomidine-induced contraction was inhibited by the alpha-1 adrenoceptor inhibitor prazosin, rauwolscine, AG1478, PP1, PP2, and GM6001 alone or by a combined treatment with prazosin and AG1478. AG1478 (3 × 10−6 M) inhibited dexmedetomidine-induced contraction in isolated endothelium-denuded rat aortas pretreated with rauwolscine. Dexmedetomidine-induced EGFR tyrosine and JNK phosphorylation were inhibited by rauwolscine, PP1, PP2, GM6001, and AG1478. Furthermore, dexmedetomidine-induced JNK phosphorylation reduced upon EGFR siRNA treatment. Therefore, these results suggested that the transactivation of EGFR associated with dexmedetomidine-induced contraction, mediated by the alpha-2 adrenoceptor, Src kinase, and matrix metalloproteinase, caused JNK phosphorylation and increased calcium levels. Full article
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19 pages, 5273 KiB  
Article
Universal Properties and Specificities of the β2-Adrenergic Receptor-Gs Protein Complex Activation Mechanism Revealed by All-Atom Molecular Dynamics Simulations
by Argha Mitra, Arijit Sarkar and Attila Borics
Int. J. Mol. Sci. 2021, 22(19), 10423; https://doi.org/10.3390/ijms221910423 - 27 Sep 2021
Cited by 4 | Viewed by 3648
Abstract
G protein-coupled receptors (GPCRs) are transmembrane proteins of high pharmacological relevance. It has been proposed that their activity is linked to structurally distinct, dynamically interconverting functional states and the process of activation relies on an interconnecting network of conformational switches in the transmembrane [...] Read more.
G protein-coupled receptors (GPCRs) are transmembrane proteins of high pharmacological relevance. It has been proposed that their activity is linked to structurally distinct, dynamically interconverting functional states and the process of activation relies on an interconnecting network of conformational switches in the transmembrane domain. However, it is yet to be uncovered how ligands with different extents of functional effect exert their actions. According to our recent hypothesis, based on indirect observations and the literature data, the transmission of the external stimulus to the intracellular surface is accompanied by the shift of macroscopic polarization in the transmembrane domain, furnished by concerted movements of highly conserved polar motifs and the rearrangement of polar species. In this follow-up study, we have examined the β2-adrenergic receptor (β2AR) to see if our hypothesis drawn from an extensive study of the μ-opioid receptor (MOP) is fundamental and directly transferable to other class A GPCRs. We have found that there are some general similarities between the two receptors, in agreement with previous studies, and there are some receptor-specific differences that could be associated with different signaling pathways. Full article
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15 pages, 2749 KiB  
Article
Optimizing the Expression of Human Dopamine Receptors in Escherichia coli
by Vanessa Boritzki, Harald Hübner, Anni Allikalt, Peter Gmeiner and Birgitta M. Wöhrl
Int. J. Mol. Sci. 2021, 22(16), 8647; https://doi.org/10.3390/ijms22168647 - 11 Aug 2021
Viewed by 3118
Abstract
The human dopamine receptors D2S and D3 belong to the group of G protein-coupled receptors (GPCRs) and are important drug targets. Structural analyses and development of new receptor subtype specific drugs have been impeded by low expression yields or receptor instability. [...] Read more.
The human dopamine receptors D2S and D3 belong to the group of G protein-coupled receptors (GPCRs) and are important drug targets. Structural analyses and development of new receptor subtype specific drugs have been impeded by low expression yields or receptor instability. Fusing the T4 lysozyme into the intracellular loop 3 improves crystallization but complicates conformational studies. To circumvent these problems, we expressed the human D2S and D3 receptors in Escherichia coli using different N- and C-terminal fusion proteins and thermostabilizing mutations. We optimized expression times and used radioligand binding assays with whole cells and membrane homogenates to evaluate KD-values and the number of receptors in the cell membrane. We show that the presence but not the type of a C-terminal fusion protein is important. Bacteria expressing receptors capable of ligand binding can be selected using FACS analysis and a fluorescently labeled ligand. Improved receptor variants can thus be generated using error-prone PCR. Subsequent analysis of clones showed the distribution of mutations over the whole gene. Repeated cycles of PCR and FACS can be applied for selecting highly expressing receptor variants with high affinity ligand binding, which in the future can be used for analytical studies. Full article
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