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Novel Insights into the Molecular Bases of Congenital Eye Abnormalities

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Pathology, Diagnostics, and Therapeutics".

Deadline for manuscript submissions: 30 June 2024 | Viewed by 820

Special Issue Editors


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Guest Editor
1. Centre de Référence des Affections Rares en Génétique Ophtalmologique (CARGO), Hôpital Purpan, place du Dr Baylac, TSA 40031, 31059 Toulouse, France
2. Laboratoire de Référence LBMR, Anomalies Malformatives de L’œil, Génétique Moléculaire, Institut Fédératif de Biologie (IFB), Hôpital Purpan, 31059 Toulouse, France
3. Centre de Biologie Intégrative, CNRS UMR5077, Université Toulouse III, MCD-CBI, 118 route de Narbonne, 31062 Toulouse, France
Interests: genetics; gene regulation; micro-anophthalmia; coloboma; anterior segment dysgenesis; eye development; organoids

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Guest Editor
Laboratory of Genetics in Ophthalmology (LGO), INSERM UMR1163, Institute of Genetic Diseases, Imagine and Paris-Cité University, 75015 Paris, France.
Interests: genetics; gene regulation; gene editing; developmental eye disorders; animal and cellular models

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Guest Editor
1. Genetics and Genomics of Rare and Complex Diseases Research Group, Instituto de Investigación Sanitaria Fundación Jiménez Díaz, Universidad Autónoma de Madrid (IIS-FJD, UAM), 28040 Madrid, Spain
2. Service of Clinical Genetics, Fundación Jiménez Díaz University Hospital, 28040 Madrid, Spain
3. Centre for Biomedical Network Research on Rare Diseases (CIBERER), U704, Instituto de Salud Carlos III, 28029 Madrid, Spain
Interests: genomics; new sequencing technologies; developmental eye disorders; inherited retinal dystrophies, splicing and gene regulation; structural variants; RNA therapy; organoids

Special Issue Information

Dear Colleagues,

The ability of the eye to carry out its basic visual function is dependent on its three-dimensional shape. Ocular morphogenesis is directed by a network of signaling pathways and highly conserved genes among vertebrates. Any disruption of these morphogenetic events by genetic or environmental influences can potentially cause ocular developmental defects. Congenital eye malformations are among the most common causes of childhood blindness and are generally associated with poor visual prognosis.

For many years, several groups including ours have focused all their efforts on research into these diseases, mainly of genetic origin with a high risk of recurrence in families. Despite some significant advances, especially due to sequencing technologies and bioinformatics tools that have substantially enhanced our ability to analyze and understand genomes and the relationship between genotype and phenotype, a large part of molecular and pathophysiological bases of these disorders are still largely unknown, yet they represent an indispensable prerequisite for developing therapeutic approaches. Significant efforts must be made since these malformations are relatively common in the general population worldwide.

The purpose of this Special Issue is to report on the recent insights achieved into the molecular bases of congenital eye abnormalities in humans as well as in other vertebrate species. In this Special Issue, original research articles and reviews are welcomed. Research areas may include (but are not limited to) the following: the functions of specific genes, new genes/variants/phenotypes, genome sequencing strategy, gene regulation genome organization, comparative genomics, RNA sequencing, expression profiling, molecular interaction, pathways, epigenomics, animal models, and organoids.

We look forward to receiving your contributions.

Dr. Julie Plaisancié
Dr. Lucas Fares-Taie
Dr. Marta Corton-Pérez
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. There is an Article Processing Charge (APC) for publication in this open access journal. For details about the APC please see here. Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • genetics
  • genome sequencing
  • gene regulation
  • pathways
  • micro-anophthalmia
  • coloboma
  • anterior segment dysgenesis
  • developmental eye disorders
  • eye development
  • animal model
  • organoids

Published Papers (1 paper)

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8 pages, 1935 KiB  
Case Report
Structural Variant Disrupting the Expression of the Remote FOXC1 Gene in a Patient with Syndromic Complex Microphthalmia
by Julie Plaisancié, Bertrand Chesneau, Lucas Fares-Taie, Jean-Michel Rozet, Jacmine Pechmeja, Julien Noero, Véronique Gaston, Isabelle Bailleul-Forestier, Patrick Calvas and Nicolas Chassaing
Int. J. Mol. Sci. 2024, 25(5), 2669; https://doi.org/10.3390/ijms25052669 - 25 Feb 2024
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Abstract
Ocular malformations (OMs) arise from early defects during embryonic eye development. Despite the identification of over 100 genes linked to this heterogeneous group of disorders, the genetic cause remains unknown for half of the individuals following Whole-Exome Sequencing. Diagnosis procedures are further hampered [...] Read more.
Ocular malformations (OMs) arise from early defects during embryonic eye development. Despite the identification of over 100 genes linked to this heterogeneous group of disorders, the genetic cause remains unknown for half of the individuals following Whole-Exome Sequencing. Diagnosis procedures are further hampered by the difficulty of studying samples from clinically relevant tissue, which is one of the main obstacles in OMs. Whole-Genome Sequencing (WGS) to screen for non-coding regions and structural variants may unveil new diagnoses for OM individuals. In this study, we report a patient exhibiting a syndromic OM with a de novo 3.15 Mb inversion in the 6p25 region identified by WGS. This balanced structural variant was located 100 kb away from the FOXC1 gene, previously associated with ocular defects in the literature. We hypothesized that the inversion disrupts the topologically associating domain of FOXC1 and impairs the expression of the gene. Using a new type of samples to study transcripts, we were able to show that the patient presented monoallelic expression of FOXC1 in conjunctival cells, consistent with the abolition of the expression of the inverted allele. This report underscores the importance of investigating structural variants, even in non-coding regions, in individuals affected by ocular malformations. Full article
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