Linking Plant Root Exudation Traits to Rhizosphere Biology

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Protection and Biotic Interactions".

Deadline for manuscript submissions: closed (20 February 2023) | Viewed by 6627

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INSA-Lyon, Université Claude Bernard Lyon1, CNRS, UMR5240, Microbiologie, Adaptation, Pathogénie, Univ Lyon, 10 rue Raphaël Dubois, 69622, Villeurbanne, France
Interests: rhizosphere; microbiome; root exudation; nitrogen cycle; dentrification; plant growth; carbon catabolic repression
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Laboratory of Microbial Ecology of the Rhizosphere (LEMiRE), Aix Marseille University, CEA, CNRS, BIAM, F-13108 Saint-Paul-Lez-Durance, France
Interests: rhizosphere; pseudomonas; extracellular vesicles; noncoding RNAs; plant–bacteria interaction
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Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12/I, Graz 8010, Austria
Interests: plant microbiota; plant–microbe interactions; metagenomics; biological control; microbial VOCs
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Special Issue Information

Dear Colleagues, 

The ability to secrete a wide range of compounds into the rhizosphere is one of the most remarkable metabolic features of plant roots, with nearly 5% to 21% of all photosynthetically fixed carbon being transferred to the rhizosphere through root exudates. The quantity and quality of root exudates are determined by plant species, the age of an individual plant, and external factors such as biotic and abiotic stressors. Root exudation is an important functional trait of host plants and essential for plant–microbe interactions. By exudation of a wide variety of compounds, roots can actively regulate the microbiota in their immediate vicinity, cope with herbivores, initiate beneficial symbioses, change the chemical and physical properties of the soil, and inhibit the growth of competing plant species. In recent decades, beneficial microorganisms have been shown to play crucial roles in plant health, nutrition, and productivity. In addition to providing a carbon-rich environment, it is known that plant roots initiate cross-talk with soil microbial communities by producing signals that initiate colonization; however, many details related to mechanisms and dynamics in such interactions remain to be deciphered.

In this Research Topic, we will explore how plants interact and mediate communication with soil organisms via various root exudation traits. In detail, we aim to understand how plants shape microbiome diversity and function through root exudation of primary and secondary metabolites. Original research articles that investigate changes in plant root exudates and their impact on plant microbiome composition and function with relevance for plant health and nutrition are requested on topics including but not limited to:

  • Changes in root exudate composition/quantity as a response to various biotic/abiotic factors and their impact on the plant microbiome;
  • Genetic manipulation of plants and its impact on root exudates and the plant microbiome;
  • Mechanistic insights into microbial community emergence and development as a specific response to root exudates;
  • Dynamics of soil organism communities as a response to changes in composition/quantity of root exudates;
  • Impact of the introduction of microbial inoculants on the nature of exudates, microbiota assembly, functions and interaction networks.

Untangling the role of specific root exudation traits in regulating microbiome diversity and function will facilitate the discovery of novel molecules to deliberately modulate the plant microbiome and hence improve plant health and nutrition.

Dr. Feth El Zahar Haichar
Dr. Wafa Achouak
Dr. Tomislav Cernava 
Guest Editors

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Keywords

  • plant microbiome
  • plant–microbe interactions
  • root exudation
  • rhizosphere
  • microbial diversity
  • microbial functioning

Published Papers (2 papers)

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Research

16 pages, 2452 KiB  
Article
Role of Benzoic Acid and Lettucenin A in the Defense Response of Lettuce against Soil-Borne Pathogens
by Saskia Windisch, Anja Walter, Narges Moradtalab, Frank Walker, Birgit Höglinger, Abbas El-Hasan, Uwe Ludewig, Günter Neumann and Rita Grosch
Plants 2021, 10(11), 2336; https://doi.org/10.3390/plants10112336 - 29 Oct 2021
Cited by 11 | Viewed by 2853
Abstract
Soil-borne pathogens can severely limit plant productivity. Induced defense responses are plant strategies to counteract pathogen-related damage and yield loss. In this study, we hypothesized that benzoic acid and lettucenin A are involved as defense compounds against Rhizoctonia solani and Olpidium virulentus in [...] Read more.
Soil-borne pathogens can severely limit plant productivity. Induced defense responses are plant strategies to counteract pathogen-related damage and yield loss. In this study, we hypothesized that benzoic acid and lettucenin A are involved as defense compounds against Rhizoctonia solani and Olpidium virulentus in lettuce. To address this hypothesis, we conducted growth chamber experiments using hydroponics, peat culture substrate and soil culture in pots and minirhizotrons. Benzoic acid was identified as root exudate released from lettuce plants upon pathogen infection, with pre-accumulation of benzoic acid esters in the root tissue. The amounts were sufficient to inhibit hyphal growth of R. solani in vitro (30%), to mitigate growth retardation (51%) and damage of fine roots (130%) in lettuce plants caused by R. solani, but were not able to overcome plant growth suppression induced by Olpidium infection. Additionally, lettucenin A was identified as major phytoalexin, with local accumulation in affected plant tissues upon infection with pathogens or chemical elicitation (CuSO4) and detected in trace amounts in root exudates. The results suggest a two-stage defense mechanism with pathogen-induced benzoic acid exudation initially located in the rhizosphere followed by accumulation of lettucenin A locally restricted to affected root and leaf tissues. Full article
(This article belongs to the Special Issue Linking Plant Root Exudation Traits to Rhizosphere Biology)
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20 pages, 4375 KiB  
Article
Modeling Root Exudate Accumulation Gradients to Estimate Net Exudation Rates by Peatland Soil Depth
by Cameron Proctor and Yuhong He
Plants 2021, 10(1), 106; https://doi.org/10.3390/plants10010106 - 6 Jan 2021
Cited by 8 | Viewed by 2443
Abstract
Root exudates accumulate as a radial gradient around the root, yet little is known about variability at the individual root level. Vertical gradients in soil properties are hypothesized to cause greater accumulation of exudates in deeper soil through hindering diffusion, increasing sorption, and [...] Read more.
Root exudates accumulate as a radial gradient around the root, yet little is known about variability at the individual root level. Vertical gradients in soil properties are hypothesized to cause greater accumulation of exudates in deeper soil through hindering diffusion, increasing sorption, and decreasing mineralization. To this end, a single root exudation model coupling concentration specific exudation and depth dependent soil properties was developed. The model was parameterized for a peatland ecosystem to explore deposition to the methanogen community. Numerical experiments indicate that exudates accumulated to a greater extent in deeper soil, albeit the effect was solute specific. Rhizosphere size for glucose doubled between the 10 and 80 cm depths, while the rhizoplane concentration was 1.23 times higher. Root influx of glucose increased from 1.431 to 1.758 nmol cm−1 hr−1, representing a recapture efficiency gain of 15.74% (i.e., 69.06% versus 84.8%). Driven by increased root influx, overall net exudation rates of select sugars and amino acids varied by a factor two. Model sensitivity analysis revealed that soil depth and root influx capability are key determinants of the rhizoplane concentration and subsequently net exudation, which determines whether effluxed compounds escape the root oxic shell and are available to the methanogen community. Full article
(This article belongs to the Special Issue Linking Plant Root Exudation Traits to Rhizosphere Biology)
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