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Article

Halogen-Bond Mediated [2+2] Photodimerizations: À la Carte Access to Unsymmetrical Cyclobutanes in the Solid State

by
Jay Quentin
1,
Eric W. Reinheimer
2 and
Leonard R. MacGillivray
1,*
1
Department of Chemistry, University of Iowa, Iowa City, IA 52242, USA
2
Rigaku Americas Corporation, 9009 New Trails Drive, The Woodlands, TX 77381, USA
*
Author to whom correspondence should be addressed.
Molecules 2022, 27(3), 1048; https://doi.org/10.3390/molecules27031048
Submission received: 27 December 2021 / Revised: 19 January 2022 / Accepted: 25 January 2022 / Published: 3 February 2022
(This article belongs to the Special Issue Halogen Bond in Crystalline Systems)

Abstract

:
The ditopic halogen-bond (X-bond) donors 1,2-, 1,3-, and 1,4-diiodotetrafluorobenzene (1,2-, 1,3-, and 1,4-di-I-tFb, respectively) form binary cocrystals with the unsymmetrical ditopic X-bond acceptor trans-1-(2-pyridyl)-2-(4-pyridyl)ethylene (2,4-bpe). The components of each cocrystal (1,2-di-I-tFb)·(2,4-bpe), (1,3-di-I-tFb)·(2,4-bpe), and (1,4-di-I-tFb)·(2,4-bpe) assemble via N···I X-bonds. For (1,2-di-I-tFb)·(2,4-bpe) and (1,3-di-I-tFb)·(2,4-bpe), the X-bond donor supports the C=C bonds of 2,4-bpe to undergo a topochemical [2+2] photodimerization in the solid state: UV-irradiation of each solid resulted in stereospecific, regiospecific, and quantitative photodimerization of 2,4-bpe to the corresponding head-to-tail (ht) or head-to-head (hh) cyclobutane photoproduct, respectively.

1. Introduction

Cyclobutane rings appended with n-pyridyl (n = 2, 3 or 4) (pyr) groups are useful building blocks to construct metal-organic assemblies and materials [1,2,3,4]. Many such molecules have been accessed via template-directed, topochemical [2+2] photodimerizations of alkenes within cocrystals. These transformations are conducted in the organic solid state and consequently, due to the highly ordered environment characteristic of crystalline reaction media, often proceed stereospecifically and quantitatively. Of particular and recent interest to our group have been cyclobutanes derived from photodimerization of unsymmetrical alkenes. These photoproducts are appended with two pairs of differently substituted pyr groups. Head-to-head (hh) and head-to-tail (ht) regioisomers are possible from photodimerizations of unsymmetrical alkenes [5]. Given that covalent-bond-forming reactions performed in the solid state are extremely sensitive to molecular packing, it is imperative to identify diverse and robust classes of template molecules capable of directing photodimerizations in crystals.
Herein, we report a series of binary cocrystals comprising components that self-assemble via N∙∙∙I X-bonds. We show that in two of these cocrystals, the ditopic X-bond donor serves to support nearest-neighbor unsymmetrical alkenes (the X-bond acceptors) in a geometry conducive to topochemical [2+2] photodimerization in the solid state. Evidence is rapidly emerging that demonstrates X-bonds as useful supramolecular synthons in cocrystals to support [2+2] photodimerizations of alkenes appended with pyr groups. Whereas there are several examples of photodimerizations of symmetrical alkenes mediated by X-bonds [6,7,8,9,10,11], we are aware of only one example – as reported by Groeneman [12] – wherein an unsymmetrical alkene is assembled to react via X-bonds. We report on the single-crystal X-ray structures of the binary cocrystals (1,n-di-I-tFb)·(2,4-bpe) (n = 2, 3 or 4), 2(1,2-di-I-tFb)·(ht-2,4-tpcb), and 2(1,3-di-I-tFb)·(hh-2,4-tpcb) (Scheme 1) with components sustained by N∙∙∙I X-bonds. For (1,2-di-I-tFb)·(2,4-bpe) and (1,3-di-I-tFb)·(2,4-bpe), we show the unsymmetrical alkene to generate the regioisomers rctt-1,3-bis(2-pyridyl)-2,4-bis(4-pyridyl)cyclobutane (ht-2,4-tpcb) and rctt-1,2-bis(2-pyridyl)-3,4-bis(4-pyridyl)cyclobutane (hh-2,4-tpcb), respectively, stereospecifically, regiospecifically, and in quantitative conversion (Scheme 2).

2. Results and Discussion

Work by our group has demonstrated that the unsymmetrical cyclobutanes rctt-bis(n-pyridyl)-bis(n′-pyridyl)cyclobutanes (nn′, n = 2 or 4, n′ = 2 or 4) can be constructed in the solid state by way of hydrogen-bond (H-bond) mediated self-assembly. The photoproducts were generated using ditopic H-bond donor coformers in binary cocrystals. Cyclobutanes with the pyr substituents in both ht- [13] and hh-regiochemistries [14] were obtained via infinite and discrete H-bonded assemblies, respectively. While H- and X- bonds often display similar structural effects in the solid state (i.e., strength, directionality), the donor moieties (e.g., hydroxyl versus halogen) exhibit very different chemical properties, which can impact processes that follow the solid-state reactions (e.g., separations of photoproducts) [15].

2.1. X-ray Crystal Structure of (1,2-di-I-tFb)∙(2,4-bpe)

The components of (1,2-di-I-tFb)∙(2,4-bpe) crystallize in the triclinic space group P 1 ¯ (Figure 1, Table 1). The asymmetric unit consists of two unique molecules each of 1,2-di-I-tFb and 2,4-bpe (Figure 1a). The pyr rings of the two molecules of 2,4-bpe lie approximately coplanar and exhibit different twist angles (ϕ ~ 3.4° for pyrN1/N2, ϕ ~ 8.0° for pyrN3/N4, Table 2). The components of the cocrystal interact primarily via N∙∙∙I X-bonds (d(N1∙∙∙I1) = 2.808(2) Å; d(N2∙∙∙I4) = 3.147(2) Å; d(N3∙∙∙I3) = 2.814(2) Å); d(N4∙∙∙I2) = 3.054(2) Å, Table 3), as well as secondary C-H∙∙∙F forces (d(H18∙∙∙I2) ~ 2.98 Å; d(H6∙∙∙I4) ~ 2.98 Å). Because of the arrangement, the components form 1D tapes (λ ~ 2.52 nm) along a diagonal within the crystallographic bc-plane (Figure 1b, Table 4). Adjacent chains run parallel and exhibit a tongue-in-groove fit manifested approximately along the crystallographic b-axis to give a corrugated, 2D, layered structure (Figure 1c, Table 4). Chains within adjacent layers run antiparallel. Alkenes between layers stack face-to-face and antiparallel (ht) with nearest-neighbor C=C bonds of 2,4’-bpe separated by 3.80 Å [N1/N2] and 3.72 Å [N3/N4] (Figure 1d). Both arrangements conform to the criteria of Schmidt [16] for topochemical [2+2] photodimerization.
The alkene C=C bonds of (1,2-di-I-tFb)∙(2,4-bpe) are photoactive. UV-irradiation (broadband Hg lamp, 100 h) of the cocrystal (1,2-di-I-tFb)·(2,4-bpe) resulted in stereospecific, regiospecific, and quantitative photodimerization of 2,4-bpe to generate ht-2,4-tpcb (Scheme 2, Table 4) [17]. The formation of the cyclobutane photoproduct was evidenced by the complete disappearance of the pair of olefinic doublets (δH = 7.65, 7.59 ppm) with concomitant emergence of a pair of cyclobutane resonances (δH = 4.87 − 4.82, 4.79 − 4.74 ppm) in the 1H NMR spectrum (Figure S1 of the ESI).

2.2. X-ray Crystal Structure of 2(1,2-di-I-tFb)∙(ht-2,4-tpcb)

A single-crystal X-ray structure determination confirmed the ht-regiochemistry of ht-2,4-tpcb (Figure 2). The components of 2(1,2-di-I-tFb)∙(ht-2,4-tpcb) crystallize in the triclinic space group P 1 ¯ (Table 1). The asymmetric unit consists of one full molecule of 1,2-di-I-tFb and one half-molecule of ht-2,4-tpcb, with the cyclobutane located around a crystallographic center of inversion (Figure 2a). The 2-pyr rings of hh-2,4-tpcb adopt an anti-conformation (Figure 2b). The components assemble primarily via N∙∙∙I X-bonds (d(N1∙∙∙I1) = 2.946(4) Å; d(N2∙∙∙I2) = 3.022(4) Å, Table 3) to form 1D assemblies that propagate along the crystallographic c-axis with 1,2-di-I-tFb bridging ht-2,4-tpcb (Figure 2b, Table 4). Adjacent assemblies interact primarily via edge-to-edge C-H∙∙∙F forces (d(H16∙∙∙F1) ~ 2.52 Å) to form 2D sheets (Figure 2c,d, Table 4).

2.3. X-ray Crystal Structure of (1,3-di-I-tFb)∙(2,4-bpe)

The components of (1,3-di-I-tFb)∙(2,4-bpe) crystallize in the monoclinic space group P21/n (Figure 3, Table 5). The asymmetric unit consists of one full molecule each of 1,3-di-I-tFb and 2,4-bpe (Figure 3a). The alkene C=C bond of 2,4-bpe lies disordered over two sites (occupancies: 0.75/0.25). The pyr rings of 2,4-bpe lie approximately coplanar (ϕ ~ 3.9°, Table 2). The components assemble via a combination of N∙∙∙I X-bonds (d(N1∙∙∙I1) = 2.795(4) Å); d(N2∙∙∙I2) = 2.926(4) Å, Table 3) and offset, edge-to-edge C-H∙∙∙F forces (d(H7A∙∙∙I2) ~ 2.99 Å) to form discrete, four-component rhomboids (ϴ1 ~ 62.6°; ϴ2 ~117.4°; l1 ~ 14.3 Å; l2 ~ 7.8 Å) (Figure 3b,c, Table 4). Adjacent assemblies interact primarily via edge-to-edge C-H∙∙∙F forces between an alkenyl H-atom of 2,4-bpe and 1,3-di-I-tFb (d(H6A∙∙∙F2) ~2.54 Å; d(H11∙∙∙F4) ~ 2.53 Å) to form sheets (Figure 3d, Table 4). Adjacent sheets interact via offset, face-to-face π-stacks between the 2-pyr and 4-pyr rings of neighboring molecules of 2,4-bpe (d(pyrN1∙∙∙pyrN2) ~ 5.10 Å). Nearest-neighbor molecules of 2,4-bpe stack head-to-head (hh) with alkene C=C bonds separated by 4.22 Å and with closest alkene C=C bonds stacked in a combination of parallel and crisscrossed geometries (Figure 3d) [18,19].
The alkene C=C bonds of (1,3-di-I-tFb)∙(2,4-bpe) are photoactive. When (1,3-di-I-tFb)∙(2,4-bpe) was subjected to UV-irradiation (broadband Hg lamp, 80 h), 2,4’-bpe underwent a photodimerization to generate hh-2,4-tpcb stereospecifically, regiospecifically, and in quantitative conversion [20] (Scheme 2, Table 4). The formation of the photoproduct was evidenced by the complete disappearance of the pair of olefinic doublets (δH = 7.65, 7.59 ppm) with concomitant emergence of a pair of cyclobutane resonances (δH = 4.89, 4.69 ppm) in the 1H NMR spectrum (Figure S3 of the ESI). The reactivity was presumably supported by the pedal-like motion of the disordered alkene C=C bonds upon irradiation [19,21,22,23,24,25,26,27,28,29,30].

2.4. X-ray Crystal Structure of 2(1,3-di-I-tFb)∙(hh-2,4-tpcb)

A single-crystal X-ray structure determination confirmed the hh-regiochemistry of hh-2,4-tpcb (Figure 4). The components of 2(1,3-di-I-tFb)∙(hh-2,4-tpcb) crystallize in the triclinic space group P 1 ¯ (Table 5). The asymmetric unit consists of one full molecule of hh-2,4-tpcb and two full molecules of 1,3-di-I-tFb (Figure 4a). The 2-pyr rings of hh-2,4-tpcb adopt an anti-conformation. The components assemble primarily via N∙∙∙I X-bonds (d(N1∙∙∙I1) = 2.826(2) Å; d(N2∙∙∙I2) = 2.892(2) Å; d(N3∙∙∙I3) = 2.826(2) Å; Table 3) and secondary edge-to-edge C-H∙∙∙F forces (d(H1∙∙∙F8) ~ 2.55 Å) to form discrete, six-component assemblies (Figure 4b, Table 4). In contrast to 2(1,2-di-I-tFb)∙(ht-2,4-tpcb), wherein all four pyr N-atoms participate in N∙∙∙I X-bonds, only three N-atoms of 2(1,3-di-I-tFb)∙(hh-2,4-tpcb) participate in N∙∙∙I X-bonds (Figure 4b). Adjacent assemblies interact primarily via Type II [22] I∙∙∙I X-bonds (d(I2∙∙∙I4) = 3.6970(4) Å) to form an extended X-bonded network (Figure 4c, Table 4).

2.5. X-ray Crystal Structure of (1,4-di-I-tFb)∙(2,4-bpe)

The components of (1,4-di-I-tFb)∙(2,4-bpe) crystallize in the monoclinic space group P21/c (Figure 5, Table 5). The asymmetric unit consists of one full molecule of 2,4-bpe and two crystallographically unique half-molecules of 1,2-di-I-tFb, the rings of which are both located around crystallographic centers of inversion (Figure 5a). The pyr rings of 2,4-bpe lie slightly twisted from coplanarity (ϕ ~ 9.9°, Table 2). The components assemble via a combination of N∙∙∙I X-bonds (d(N1∙∙∙I2) = 2.802(4) Å; d(N2∙∙∙I1) = 2.884(3) Å, Table 3) and offset, edge-to-edge C-H∙∙∙I forces (d(H7∙∙∙I1) ~ 3.06 Å) to form infinite zig-zag chains (λ ~ 2.41 nm; ϴ ~ 58.3°) characterized by an ABA’B repeat (Figure 5b, Table 4). Adjacent chains run parallel and interact primarily via Type II π∙∙∙I X-bonds (d(pyrN2∙∙∙I2) ~ 3.70 Å) to form columns (Figure 5c, Table 4). Between adjacent chains, nearest-neighbor alkenes stack parallel, appreciably offset, and separated by 5.22 Å (Figure 5c), a geometry that does not satisfy the criteria of Schmidt [16] for topochemical [2+2] photodimerization. The X-bonded columns run antiparallel and pack in a herringbone pattern (Figure 5d). UV-irradiation (broadband Hg lamp, 20 h) of a sample of (1,4-di-I-tFb)∙(2,4-bpe) revealed the solid to be photostable (Table 4).

2.6. Structural Considerations

The unsymmetrical nature of 2,4-bpe provides two different pyr N-atoms (i.e., 2-pyr versus 4-pyr) to participate in X-bonding. We note that in virtually all cases, the N∙∙∙I X-bond lengths involving I-atoms of the X-bond donors 1,n-di-I-tFb to N-atoms of the X-bond acceptors 2,4-bpe, ht-2,4-tpcb, and hh-2,4-tpcb are shorter for 4-pyr versus 2-pyr (Table 3). The average percent relative shortening (prs) values for N∙∙∙I X-bonds to 2-pyr versus 4-pyr N atoms were 15.7% and 19.5%, respectively (Table 3). Given that pKa values for similar 4-pyr and 2-pyr analogs are comparable [31], we attribute the observation to greater steric crowding between the lone pair on the N-atom of 2-pyr versus 4-pyr rings. Crowding would presumably preclude maximal orbital overlap (i.e., strongest X-bond formation) between the N-atom lone pair and the σ-hole of the relatively large I-atoms relative to an appreciably less congested 4-pyr N-atom.

3. Materials and Methods

3.1. General Experimental

All reagents and solvents (synthesis grade) were purchased from commercial sources and used as received unless otherwise stated. 1,2-diiodotetrafluorobenzene (1,2-di-I-tFb; 99%), trans-1-(2-pyridyl)-2-(4-pyridyl)ethylene (2,4-bpe; 97%), and 1,4-diiodotetrafluorobenzene (1,4-di-I-tFb, 98%) were purchased from Aldrich©. 1,3-diiodotetrafluorobenzene (1,3-di-I-tFb; 97%) was purchased from Apollo Scientific© (Bredbury, UK). Chloroform (CHCl3; certified ACS grade, ≥99.8%, approximately 0.75% EtOH as preservative) was purchased from Fisher Chemical© (Hampton, NH, USA). All cocrystal syntheses were conducted in screw-cap glass scintillation vials. For cocrystal syntheses, “thermal dissolution” refers to the process of: (1) combining both cocrystal components in the same screw-cap glass vial; (2) adding solvent portion-wise while maintaining a saturated mixture at rt; and (3) tightly capping the vial and heating the mixture on a hotplate until all solids dissolve to afford a homogeneous solution in the minimum necessary volume of solvent. Compositions of all single crystals were shown to be representative of the bulk material by matching experimental pXRD patterns with those simulated from scXRD data. Photoreactions were conducted in an ACE® photo cabinet equipped with a water-cooled ACE® quartz, 450 W, broadband (λ = 1367.3–222.4 nm), medium pressure, Hg-vapor lamp (of the total energy emitted by the broadband lamp, approximately 40–48% is in the ultraviolet portion of the spectrum, 40–43% in the visible, and the balance in the infrared). Photoreactions were conducted by: (1) grinding single crystals of the cocrystal to a fine powder with an agate mortar and pestle; (2) smearing the powder between two UV-transparent Pyrex® plates to create the thinnest layer possible; and (3) irradiating the powder in 10 h intervals, taking care to ensure uniform irradiation. Uniform irradiation of the powdered cocrystals was accomplished by: (1) occasionally (between every other irradiation interval) scraping (razor blade) the irradiated powder from both plates of the plate assembly; (2) combining the powder from both plates; (3) homogenizing the combined, bulk powder via thorough grinding (agate mortar and pestle); and (4) redistributing the homogenized powder between both plates. The plate assembly was also flipped between irradiation intervals to ensure equal irradiation of both faces of the plate assembly.

3.2. Synthetic Procedures

Molecules 27 01048 i001
(1,2-di-I-tFb)∙(2,4-bpe). Cocrystals of (1,2-di-I-tFb)∙(2,4-bpe) were obtained by thermal dissolution of 2,4-bpe (192.9 mg, 1.03 mmol) and 1,2-di-I-tFb (418.7 mg, 1.03 mmol, 1.0 equiv) in CHCl3 (7.0 mL). Upon cooling to rt, single crystals of (1,2-di-I-tFb)∙(2,4-bpe)—colorless laths, suitable for scXRD—formed within 15 d.
Molecules 27 01048 i002
2(1,2-di-I-tFb)∙(ht-2,4-tpcb). Single crystals of (1,2-di-I-tFb)∙(2,4-bpe) were ground to a fine powder using an agate mortar and pestle and smeared between two Pyrex® plates. The plate assembly was placed in an ACE® photo cabinet. After 100 h, 1H NMR assay revealed quantitative, stereospecific, and regiospecific conversion to 2(1,2-di-I-tFb)·(ht-2,4-tpcb). The product powder was scraped from the plates, dissolved in the minimum volume of boiling CHCl3, and allowed to slowly cool to rt: single crystals of 2(1,2-di-I-tFb)·(ht-2,4-tpcb)—colorless, irregular prisms, suitable for scXRD—formed within 6 d. Analytical data: 1H NMR (400 MHz, DMSO-d6): δ 8.40 (dd, J = 4.8 0.8 Hz, 2Ha), 8.27 (dd, J = 4.6, 1.4 Hz, 4Hb), 7.55 (app td, J = 7.6, 1.8 Hz, 2Hc), 7.19 (d, J = 7.8 Hz, 2Hd), 7.16 (d, J = 6.0 Hz, 4He), 7.06 (ddd, J = 7.5, 4.9, 0.9 Hz, 2Hf), 4.87-4.82 (m, 2Hg), 4.79-4.74 (m, 2Hh). Spectral data were consistent with those previously reported [17] for the same compound.
Molecules 27 01048 i003
(1,3-di-I-tFb)∙(2,4-bpe). Cocrystals of (1,3-di-I-tFb)∙(2,4-bpe) were obtained by thermal dissolution of 2,4-bpe (191.1 mg, 1.02 mmol) and 1,3-di-I-tFb (430.5 mg, 1.02 mmol, 1.0 equiv) in CHCl3 (7.0 mL). Upon cooling to rt, single crystals of (1,3-di-I-tFb)∙(2,4-bpe)—colorless plates, suitable for scXRD—formed within 15 d.
Molecules 27 01048 i004
2(1,3-di-I-tFb)∙(hh-2,4-tpcb). Single crystals of (1,3-di-I-tFb)∙(2,4-bpe) were ground to a fine powder using an agate mortar and pestle and smeared between two Pyrex® plates. The plate assembly was placed in an ACE® photo cabinet. After 80 h, 1H NMR assay revealed quantitative, stereospecific, and regiospecific conversion to 2(1,3-di-I-tFb)·(hh-2,4-tpcb). The product powder was scraped from the plates, dissolved in the minimum volume of boiling CHCl3, and allowed to slowly cool to rt: single crystals of 2(1,3-di-I-tFb)·(hh-2,4-tpcb)—colorless prisms, suitable for scXRD—formed within 6 d. Note: When preparing a sample of these crystals for pXRD assay (dry-grinding with an agate mortar and pestle), the solid initially assumed a moist, paste-like consistency, but eventually dried upon sitting exposed to air for several hours at rt. Analytical data: 1H NMR (400 MHz, DMSO-d6): δ 8.33 (ddd, J = 4.8, 1.7, 0.9 Hz, 2Ha), 8.31 (dd, J = 4.5, 1.5 Hz, 4Hb), 7.50 (app td, J = 7.7, 1.8 Hz, 2Hc), 7.21 (dd, J = 4.5, 1.6 Hz, 4Hd), 7.12 (d, J = 7.8 Hz, 2He), 7.02 (ddd, J = 7.5, 4.9, 1.0 Hz, 2Hf), 4.89 (d, J = 6.4 Hz, 2Hg), 4.69 (d, J = 6.3 Hz, 2Hh). Spectral data were consistent with those previously reported [20] for the same compound.
Molecules 27 01048 i005
(1,4-di-I-tFb)(2,4-bpe). Cocrystals of (1,4-di-I-tFb)∙(2,4-bpe) were obtained by thermal dissolution of 2,4-bpe (194.0 mg, 1.03 mmol) and 1,4-di-I-tFb (428.8 mg, 1.05 mmol, 1.0 equiv) in CHCl3 (7.0 mL). Upon cooling to rt, single crystals of (1,4-di-I-tFb)∙(2,4-bpe)—colorless blades, suitable for scXRD—formed within 11 d.

3.3. H NMR Spectroscopy

Proton nuclear magnetic resonance (1H NMR) spectra were recorded at room temperature on a Bruker® AVANCE NEO-400 spectrometer (Bruker Corp., Billerica, MA, USA) operating at 400 MHz using a liquid-N2-cooled double-resonance broadband ProdigyTM cryoprobe. 1H NMR data are reported as follows: chemical shift (δ, ppm), multiplicity (d = doublet, dd = doublet of doublets, ddd = doublet of doublet of doublets, app td = apparent triplet of doublets, m = multiplet), coupling constant(s) (J, Hz), and integration. Chemical shift values were calibrated relative to residual solvent resonance (central peak of DMSO: δH = 2.50 ppm) as the internal standard. All 1H NMR data were collected and plotted within the Bruker® TopSpinTM v3.6.1 software suite.

3.4. Powder X-ray Diffraction (pXRD)

Powder X-ray diffraction (pXRD) data were collected at room temperature on a Bruker® D8 Advance X-ray diffractometer (Bruker Corp., Billerica, MA, USA) on samples mounted on glass slides. Each sample was finely ground using an agate mortar and pestle prior to mounting. Instrument parameters: radiation wavelength, CuKα (λ = 1.5418 Å); scan type, coupled TwoTheta/Theta; scan mode, continuous PSD fast; scan range, 5–40° two-theta; step size, 0.02°; voltage, 40 kV; current, 30 mA. Background subtractions were applied to all experimentally collected data within the Bruker® DIFFRAC.EVA v3.1 software suite. All data were plotted in the Microsoft® Excel 2016 software suite. Simulated pXRD patterns were calculated from scXRD data within the CCDC Mercury [32] software suite.

3.5. Single-Crystal X-ray Diffraction (scXRD)

Single-crystal X-ray diffraction data were collected on a Bruker® D8 VENTURE® (DUO) CCD diffractometer (Bruker Corp., Billerica, MA, USA) equipped with a Bruker® PHOTON III® photon counting detector and an Oxford Cryostream® 800 series cold N2 gas stream cooling system (Oxford Cryosystems, Oxford, UK). Data were collected at a low temperature (150(2) K) using graphite-monochromated MoKα radiation (λ = 0.71073 Å). Crystals were mounted in Paratone® oil on a MiTeGen© magnetic mount. Data collection strategies for ensuring maximum data redundancy and completeness were calculated using the Bruker® Apex IITM software suite. Data collection, initial indexing, frame integration, Lorentz-polarization corrections and final cell parameter calculations were likewise accomplished using the Apex II software suite. Multi-scan absorption corrections were performed using SADABS [33]. Structure solution and refinement were accomplished using SHELXT [34] and SHELXL [35], respectively, within the Olex2 [36] v1.2 graphical user interface. Space groups were unambiguously verified using the PLATON© [37] executable. All non-hydrogen atoms were refined anisotropically. All hydrogen atoms were attached via a riding model at calculated positions using suitable HFIX commands. The occupancies of the major and minor positions for the disordered alkene C=C core within (1,3-di-I-tFb)·(2,4-bpe) converged to their respective ratios after each was identified in the difference map and freely refined. Figures of all structures were rendered in the CCDC Mercury [32] software suite.

4. Conclusions

N∙∙∙I X-bonds have been used to support topochemical [2+2] photodimerizations of an unsymmetrical alkene to generate either of two regioisomeric cyclobutane photoproducts in the organic solid state. The transformations proceeded stereospecifically, regiospecifically, and quantitatively to generate ht- or hh-2,4-tpcb. Our contribution, thus, can be considered to afford à la carte access to either regioisomer. The formation of each product is achieved from the same alkene substrate, 2,4’-bpe, using commercially available X-bond donor cocrystal formers. Our future efforts will aim to expand the scope of the supramolecular methodology described herein to other unsymmetrical alkenes to afford access to additional unsymmetrical cyclobutane photoproducts.

Supplementary Materials

The following are available online. Figure S1: Stacked 1H NMR spectra of (1,2-di-I-tFb)∙(2,4-bpe) and 2(1,2-di-I-tFb)∙(ht-2,4-tpcb); Figure S2: 1H NMR spectrum of 2(1,2-di-I-tFb)∙(ht-2,4-tpcb); Figure S3: Stacked 1H NMR spectra of (1,3-di-I-tFb)∙(2,4-bpe) and 2(1,3-di-I-tFb)∙(hh-2,4-tpcb); Figure S4: 1H NMR spectrum of 2(1,3-di-I-tFb)∙(hh-2,4-tpcb); Figure S5: pXRD pattern of (1,2-di-I-tFb)·(2,4-bpe); Figure S6: pXRD pattern of 2(1,2-di-I-tFb)·(ht-2,4-tpcb) (as-synthesized); Figure S7: pXRD pattern of 2(1,2-di-I-tFb)·(ht-2,4-tpcb); Figure S8: pXRD pattern of (1,3-di-I-tFb)·(2,4-bpe); Figure S9: pXRD pattern of 2(1,3-di-I-tFb)·(hh-2,4-tpcb); Figure S10: pXRD pattern of (1,4-di-I-tFb)·(2,4-bpe).

Author Contributions

Conceptualization: J.Q. and L.R.M.; methodology: J.Q.; formal analysis: J.Q., E.W.R. and L.R.M.; investigation: J.Q. and L.R.M.; resources: L.R.M.; writing–original draft preparation: J.Q., E.W.R. and L.R.M.; writing–review and editing: J.Q., E.W.R. and L.R.M.; supervision: L.R.M.; funding acquisition: L.R.M. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the National Science Foundation, grant numbers LRM DMR-1708673 and CHE-1828117.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data presented in this study are available in the article, Cambridge Structural Database (CSD), or the Supplementary Materials.

Acknowledgments

We thank Dale Swenson for discussions on X-ray crystallography.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.

Sample Availability

Samples of the compounds (1,2-di-I-tFb)∙(2,4-bpe), 2(1,2-di-I-tFb)∙(ht-2,4-tpcb), (1,3-di-I-tFb)∙(2,4-bpe), 2(1,3-di-I-tFb)∙(hh-2,4-tpcb), ht-2,4-tpcb, and hh-2,4-tpcb are available from the authors upon request. are available from the authors.

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Scheme 1. Ditopic components for cocrystals and photoproducts.
Scheme 1. Ditopic components for cocrystals and photoproducts.
Molecules 27 01048 sch001
Scheme 2. UV-irradiation of (1,2-di-I-tFb)·(2,4-bpe) or (1,3-di-I-tFb)·(2,4-bpe) generates either ht- or hh-2,4-tpcb, respectively.
Scheme 2. UV-irradiation of (1,2-di-I-tFb)·(2,4-bpe) or (1,3-di-I-tFb)·(2,4-bpe) generates either ht- or hh-2,4-tpcb, respectively.
Molecules 27 01048 sch002
Figure 1. Perspectives of (1,2-di-I-tFb)∙(2,4-bpe): (a) asymmetric unit (anisotropic displacement ellipsoids at 50% probability; view along a); (b) 1D tapes illustrating ABA’B’ repeat motif (view along a); (c) corrugated layered structure (space-filling); and (d) reactive arrangement of nearest-neighbor alkene pairs.
Figure 1. Perspectives of (1,2-di-I-tFb)∙(2,4-bpe): (a) asymmetric unit (anisotropic displacement ellipsoids at 50% probability; view along a); (b) 1D tapes illustrating ABA’B’ repeat motif (view along a); (c) corrugated layered structure (space-filling); and (d) reactive arrangement of nearest-neighbor alkene pairs.
Molecules 27 01048 g001aMolecules 27 01048 g001b
Figure 2. Perspectives of 2(1,2-di-I-tFb)∙(ht-2,4-tpcb): (a) asymmetric unit (anisotropic displacement ellipsoids at 50% probability); (b) 1D assemblies; and (c) sheets based on C-H∙∙∙F forces.
Figure 2. Perspectives of 2(1,2-di-I-tFb)∙(ht-2,4-tpcb): (a) asymmetric unit (anisotropic displacement ellipsoids at 50% probability); (b) 1D assemblies; and (c) sheets based on C-H∙∙∙F forces.
Molecules 27 01048 g002aMolecules 27 01048 g002b
Figure 3. Perspectives of (1,3-di-I-tFb)∙(2,4-bpe) (minor fraction of alkene disorder omitted for clarity): (a) asymmetric unit (anisotropic displacement ellipsoids at 50% probability); (b) four-component assembly; (c) rhomboidal repeat highlighted (C-H∙∙∙I contacts omitted for clarity); (d) sheets with two assemblies shown as space filling; and (e) nearest-neighbor alkenes between adjacent sheets highlighting closest alkene separation (green dashed arrow).
Figure 3. Perspectives of (1,3-di-I-tFb)∙(2,4-bpe) (minor fraction of alkene disorder omitted for clarity): (a) asymmetric unit (anisotropic displacement ellipsoids at 50% probability); (b) four-component assembly; (c) rhomboidal repeat highlighted (C-H∙∙∙I contacts omitted for clarity); (d) sheets with two assemblies shown as space filling; and (e) nearest-neighbor alkenes between adjacent sheets highlighting closest alkene separation (green dashed arrow).
Molecules 27 01048 g003aMolecules 27 01048 g003b
Figure 4. Perspectives of 2(1,3-di-I-tFb)∙(hh-2,4-tpcb): (a) asymmetric unit (thermal ellipsoids shown at 50% probability); (b) discrete, six-component assembly; and (c) adjacent assemblies illustrating Type II I∙∙∙I X-bonds.
Figure 4. Perspectives of 2(1,3-di-I-tFb)∙(hh-2,4-tpcb): (a) asymmetric unit (thermal ellipsoids shown at 50% probability); (b) discrete, six-component assembly; and (c) adjacent assemblies illustrating Type II I∙∙∙I X-bonds.
Molecules 27 01048 g004
Figure 5. Perspectives of (1,4-di-I-tFb)∙(2,4-bpe): (a) ORTEP (thermal ellipsoids shown at 50% probability; view along b); (b) zig-zag chains illustrating ABA’B repeat; (c) columns highlighting Type II π∙∙∙I X-bonds (red dashed lines) (C-H∙∙∙I contacts omitted for clarity; view along c); and (d) herringbone packing of columns.
Figure 5. Perspectives of (1,4-di-I-tFb)∙(2,4-bpe): (a) ORTEP (thermal ellipsoids shown at 50% probability; view along b); (b) zig-zag chains illustrating ABA’B repeat; (c) columns highlighting Type II π∙∙∙I X-bonds (red dashed lines) (C-H∙∙∙I contacts omitted for clarity; view along c); and (d) herringbone packing of columns.
Molecules 27 01048 g005aMolecules 27 01048 g005b
Table 1. Crystallographic data and structure refinement statistics *.
Table 1. Crystallographic data and structure refinement statistics *.
Cocrystal(1,2-di-I-tFb)·(2,4-bpe)2(1,2-di-I-tFb)·(ht-2,4-tpcb)
CCDC deposition number 21047462114529
Empirical formula C18H10F4I2N2C36H20F8I4N4
Formula weight/g·mol−1584.081168.16
Temperature/K 150(2)150(2)
Crystal system TriclinicTriclinic
Space group P-1P-1
a7.5879(8)9.1499(10)
b13.1862(13)10.6011(11)
c19.2918(19)10.9421(12)
α80.092(5)62.054(5)
β89.530(5)77.014(5)
γ74.125(5)76.828(5)
Volume/Å3 1827.4(3)904.32(17)
Z 41
ρcalc/g·cm−32.122.15
μ/mm−13.4843.521
F(000) 1096548
Crystal size/mm3 0.11 × 0.06 × 0.030.10 × 0.09 × 0.06
Radiation MoKα (λ = 0.71073)MoKα (λ = 0.71073)
2Θ range for data collection/° 4.21 to 50.254.25 –to 50.25
Index ranges −9 ≤ h ≤ 9, −15 ≤ k ≤ 15, −23 ≤ l ≤ 21−10 ≤ h ≤ 10, −12 ≤ k ≤ 12, −13 ≤ l ≤ 13
Reflections collected 4310540307
Independent reflections 6502 [Rint = 0.0349, Rsigma = 0.0229]3220 [Rint = 0.0830, Rsigma = 0.0312]
Data/restraints/parameters 6502/0/5493220/0/235
Goodness-of-fit on F2 1.0661.060
Final R indices [I ≥ 2σ (I)] R1 = 0.0170R1 = 0.0358
wR2 = 0.0363wR2 = 0.0781
R indices (all data)R1 = 0.0211R1 = 0.0377
wR2 = 0.0379wR2 = 0.0790
Largest diff. peak/hole/e·Å−3 0.66/−0.362.44/−0.94
R 1 = F o     F c / F o ,   w R 2 = w F o 2     F c 2 2 / w F o 2 2 1 / 2 . Goodness-of-fit on F2  = w F o F c 2 / N obs N parameter 1 / 2 .
Table 2. Twist angles (ϕ) of pyr rings of 2,4-bpe in binary cocrystals.
Table 2. Twist angles (ϕ) of pyr rings of 2,4-bpe in binary cocrystals.
Crystal2,4-bpe MoleculeTwist Angle ϕ
(1,2-di-I-tFb)·(2,4-bpe)N1/N23.4
N3/N48.0
(1,3-di-I-tFb)·(2,4-bpe)N1/N23.8
(1,4-di-I-tFb)·(2,4-bpe)N1/N29.9
Table 3. X-bond metrics for cocrystals.
Table 3. X-bond metrics for cocrystals.
CocrystalX-BondPyridyl Substitutiond(N···I)/ÅΘ(C-I···N)/°X-Bond Typeprs *
(1,2-di-I-tFb)·(2,4-bpe)I1···N142.808(2)176.6I20
I2···N423.054(2)174.0I13
I3···N342.814(2)176.8I20
I4···N223.147(2)171.9I11
2(1,2-di-I-tFb)·(ht-2,4-tpcb)I1···N142.946(4)172.6I17
I2···N223.022(4)172.1I14
(1,3-di-I-tFb)·(2,4-bpe)I1···N142.795(4)177.2I21
I2···N222.926(4)171.8I17
2(1,3-di-I-tFb)·(hh-2,4-tpcb)I1···N142.826(2)174.4I20
I2···N242.892(2)177.9I18
I3···N322.826(2)169.0I20
(1,4-di-I-tFb)·(2,4-bpe)I2···N142.802(4)177.5I21
I1···N222.884(3)175.6I18
* prs ≡ percent relative shortening = {1 − d(N···I)/[rvdW(I) + rvdW(N)]}·100, where rvdW(N) and rvdW(I) are the van der Waals radii for nitrogen and iodine, respectively, with rvdW(N) = 1.55 Å and rvdW(I) = 1.98 Å.
Table 4. Structural features of cocrystals.
Table 4. Structural features of cocrystals.
CocrystalPrimary AssemblySecondary AssemblyPhotoreactivity
(1,2-di-I-tFb)·(2,4-bpe) (2104746)infinite 1D tape based on N∙∙∙Iinfinite 2D corrugated layersactive
2(1,2-di-I-tFb)·(rctt-ht-2,4-tpcb) (2114529)infinite 1D chain based on N∙∙∙Iinfinite sheets based on C-H∙∙∙F-
(1,3-di-I-tFb)·(2,4-bpe) (2104747)discrete, four-component assembly based on N∙∙∙Iinfinite sheets based on C-H∙∙∙Factive
2(1,3-di-I-tFb)·(rctt-hh-2,4-tpcb) (2114285)discrete, six-component assembly based on N∙∙∙I and C-H∙∙∙F3D network based on Type II I∙∙∙I-
(1,4-di-I-tFb)·(2,4-bpe) (2104748)infinite zig-zag chains based on N∙∙∙Iinfinite columns based on Type II I∙∙∙Iinert
Table 5. Crystallographic data and structure refinement statistics *.
Table 5. Crystallographic data and structure refinement statistics *.
Cocrystal(1,3-di-I-tFb)·(2,4-bpe)2(1,3-di-I-tFb)·(hh-2,4-tpcb)(1,4-di-I-tFb)·(2,4-bpe)
CCDC deposition number 210474721142852104748
Empirical formula C18H10F4I2N2C36H20F8I4N4C18H10F4I2N2
Formula weight/g·mol−1584.081168.16584.08
Temperature/K 150(2)150(2)150(2)
Crystal system MonoclinicTriclinicMonoclinic
Space group P21/nP-1P21/c
a4.2177(4)8.1884(6)17.7168(18)
b27.254(3)14.2749(14)5.2208(5)
c16.1797(16)16.3737(16)20.159(2)
α9082.111(5)90
β90.940(5)87.336(5)103.519(5)
γ9073.759(5)90
Volume/Å3 1859.6(3)1820.1(3)1813.0(3)
Z 424
ρcalc/g·cm−32.092.132.14
μ/mm−13.4243.4983.512
F(000) 109610961096
Crystal size/mm3 0.15 × 0.15 × 0.050.07 × 0.06 × 0.050.27 × 0.09 × 0.02
Radiation MoKα (λ = 0.71073)MoKα (λ = 0.71073)MoKα (λ = 0.71073)
2Θ range for data collection/° 5.036 to 50.2444.152 to 50.2464.156 to 50.246
Index ranges −5 ≤ h ≤ 5, −32 ≤ k ≤ 32, −18 ≤ l ≤ 19 −9 ≤ h ≤ 9, −17 ≤ k ≤ 17, −18 ≤ l ≤ 19−21 ≤ h ≤ 21, −24 ≤ k ≤ 24, −23 ≤ l ≤ 23
Reflections collected 388793495446454
Independent reflections 3283 [Rint = 0.0379, Rsigma = 0.0213]6475 [Rint = 0.0264, Rsigma = 0.0184]3233 [Rint = 0.0362, Rsigma = 0.0153]
Data/restraints/parameters 3234/18/2536475/0/4693233/0/235
Goodness-of-fit on F2 1.0821.0331.049
Final R indices [I ≥ 2σ (I)] R1 = 0.0299R1 = 0.0174R1 = 0.0248
wR2 = 0.0802wR2 = 0.0365wR2 = 0.0538
R indices (all data)R1 = 0.0306R1 = 0.0222R1 = 0.0271
wR2 = 0.0807wR2 = 0.0387wR2 = 0.0551
Largest diff. peak/hole/e·Å−3 0.79/−0.631.20/−1.000.71/−0.60
R 1 = F o F c / F o ,   w R 2 = w F o 2 F c 2 2 / w F o 2 2 1 / 2 . Goodness-of-fit on F2  =     w F o F c 2 / N obs N parameter 1 / 2 .
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Quentin, J.; Reinheimer, E.W.; MacGillivray, L.R. Halogen-Bond Mediated [2+2] Photodimerizations: À la Carte Access to Unsymmetrical Cyclobutanes in the Solid State. Molecules 2022, 27, 1048. https://doi.org/10.3390/molecules27031048

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Quentin J, Reinheimer EW, MacGillivray LR. Halogen-Bond Mediated [2+2] Photodimerizations: À la Carte Access to Unsymmetrical Cyclobutanes in the Solid State. Molecules. 2022; 27(3):1048. https://doi.org/10.3390/molecules27031048

Chicago/Turabian Style

Quentin, Jay, Eric W. Reinheimer, and Leonard R. MacGillivray. 2022. "Halogen-Bond Mediated [2+2] Photodimerizations: À la Carte Access to Unsymmetrical Cyclobutanes in the Solid State" Molecules 27, no. 3: 1048. https://doi.org/10.3390/molecules27031048

APA Style

Quentin, J., Reinheimer, E. W., & MacGillivray, L. R. (2022). Halogen-Bond Mediated [2+2] Photodimerizations: À la Carte Access to Unsymmetrical Cyclobutanes in the Solid State. Molecules, 27(3), 1048. https://doi.org/10.3390/molecules27031048

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