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Article

1H-1,2,3-triazolyl-1,6-naphthyridin-7(6H)-ones as Potential Fluorescent Nucleoside Analogues: Synthesis and Optical Properties

Institut Parisien de Chimie Moléculaire, CNRS UMR 9232, Sorbonne Université, F-75252 Paris, France
*
Authors to whom correspondence should be addressed.
These authors contributed equally to this work.
Molecules 2024, 29(3), 687; https://doi.org/10.3390/molecules29030687
Submission received: 8 December 2023 / Revised: 24 January 2024 / Accepted: 30 January 2024 / Published: 1 February 2024

Abstract

:
In this article, we present the synthesis and the optical properties of three original molecules as potential fluorescent ribonucleoside analogues incorporating a 1,6-naphthyridin-7(6H)-one scaffold as a fluorescent nucleobase and a 1,2,3-triazole as a linkage. The nucleosides were prepared via a Cu alkyne-azide cycloaddition (CuAAC) reaction between a ribofuranosyl azide and a 4-ethynylpyridine partner. Construction of substituted 1,6-naphthyridin-7(6H)-ones was achieved through two additional steps. Optical property studies were investigated on nucleoside analogues. Powerful fluorescence properties have been evidenced with a remarkable change of emissivity depending on the polarity of the solvent, making these molecules suitable as a new class of artificial fluorescent nucleosides for investigating enzyme binding sites as well as probing nucleic acids. In addition, we are convinced that such analogues could be of great interest in the search for new antiviral or antitumoral drugs based on nucleosides.

1. Introduction

Nucleic acid structure and dynamics are of fundamental importance in understanding biological processes in cells [1,2,3]. In this context, nucleoside derivatives and analogues have been designed to interfere with cell metabolism and are being developed as antiviral, anticancer, and antibacterial agents [4,5,6] or as tools for several purposes, such as investigating enzyme binding sites, protein interactions, DNA features, and perturbations [7,8].
DNA-based fluorescent structures capable of labeling nucleic acids are powerful tools to investigate DNA interactions and have been used in a variety of applications in chemical biology [9,10,11,12].
In this context, numerous environmentally sensitive unnatural fluorescent nucleosides have been developed to fluorescently label nucleic acids via binding, intercalation, or covalent bonds [13,14]. The design of fluorescent nucleosides is a great challenge and has stimulated much research in various fields of photophysics, synthetic chemistry, and computational studies. The main fluorescence properties should include a change in fluorescence intensity or a shift in the emission maximum when interacting with the DNA environment while maintaining the other key optical properties, such as large Stokes Shift, high brightness, and high quantum yield.
In this field, unnatural fluorescent nucleosides possessing heterocyclic nucleobases are widely represented. EthenoA [15], Coumarin nucleobase analogues [16], Nile red, imidazophenanthrene, and other types of heterocyclic nucleobases have been developed [17,18,19,20]. In particular, 1,2,3-triazolyl nucleoside analogues, which consist in connecting the appropriate aromatic ring or purine residue to a 1,2,3-triazole moiety, have found a growing interest due to their powerful antiviral activities [21,22,23]. 4-substituted-1,2,3 triazolo nucleotide analogues are also well known for antitumoral activities as inhibitors of human ecto-5′-nucleosidase CD73, a cell-surface protein associated with adenosine metabolism that promotes tumor progression [24]. Interestingly, a nucleoside analogue incorporating a diaminopyrimidine linked to a 1,2,3-triazole [25], also called click fleximer [26,27], was found to be luminescent and a promising tool to investigate enzyme binding sites and to characterize protein and nucleic acid interactions (Figure 1). Indeed, unlike the classic bicyclic fused system of the parent purine nucleobase, the two heterocyclic components of the click fleximers are attached by a C–C bond that permits conformational mobility. As a consequence, the relative flexibility of nucleobase enables it to adapt rapidly to the spatial requirement of an enzyme binding site. The design of flexible bioprobes will clearly provide a better understanding of the conformational effects of enzymes, and elucidate the structure of ligand binding sites in biologically important enzyme systems [28]. Other synthetic fleximer derivatives whose heterocyclic bases contain one or more than one planar ring capable of interacting with their environment, via π stacking and/or H-bonding, have been discovered. For example, a fluorescent triazolyl containing a pyrene ring has shown interesting fluorescence properties and capacity to interact with BSA via hydrophobic and electrostatic bindings [29] (Figure 1). Interestingly, an environment-sensitive fluorescent nucleoside analogue bearing a thienyl ring linked to a 3-hydroxychromone (3HCnt) as ESIPT dye has been successfully incorporated into a DNA sequence with minimal perturbation. In addition, the authors demonstrated that 3HCnt can monitor local conformation changes of oligonucleotides upon interaction with HIV-1 nucleocapsid protein [30].
Naphthyridines [31] are important scaffolds used for biological applications [32,33]. These structures are also known as fluorescent probes [34] or as luminescent materials [35]. 1,8-Naphthyridine C-nucleoside and their base-pairing properties have been reported [36]. Among these structures, naphthyridinones are also well known for their biological properties [37]. Only the 1,8-naphthyridinones have been particularly studied as nucleobase analogues. 1,8-naphthyridin-2(1H)-ones were described as efficient bicyclic and tricyclic fluorescent-based analogues of thymines [38] and were further incorporated into DNA [39,40]. The naphthyridinones thus appear as promising scaffolds to be developed as new fluorescent nucleosides.
We have recently reported the short synthesis of 1,6-naphthyridin-7(6H)-ones 1, a fluorescent heteroaromatic scaffold with adequate photophysical properties to be incorporated as the nucleobase into a nucleoside (Scheme 1). Indeed, 1,6-naphthyridin-7(6H)-one scaffold shows a visible absorption, a solvatochromism, an acidochromism, large Stokes shifts, and high quantum yields depending on the solvent and media. These napthyridinones are also able to generate dual fluorescence in polar solvent from an intramolecular proton transfer at the excited state mechanism (ESIPT) coming from their lactim-lactam forms [41] (Scheme 1).
Therefore, the recent development in the field of triazole-linked fluorescent nucleoside conjugates and the photophysical properties of 1,6-naphthyridin-7(6H)-ones encouraged us to design and synthetize fused 1,6-naphthyridin-7(6H)-ones with triazole and to study their photophysical properties. We thus expect to develop a new class of fluorescent nucleoside analogues with potentially powerful biological properties as well as to use them as molecular probes to investigate enzyme binding sites or the structural characteristics of nucleic acids.
Herein, we described the synthesis of three original 1,2,3-triazole nucleoside conjugates (TzNat) containing fluorescent 1,6-naphthyridin-7(6H)-ones as the nucleobase using CuAAC click chemistry (Figure 1). Photophysical properties (absorption, emission quantum yield) of TzNat A, B, and C were studied in various solvents (Figure 1).
Figure 1. Selection of unnatural fluorescent nucleoside analogues reported in the literature [25,29,30,41] and the design of 1,2,3-triazolyl-1,6-naphthyridin-7(6H)-ones nucleoside analogues TzNat A to C presented in this work.
Figure 1. Selection of unnatural fluorescent nucleoside analogues reported in the literature [25,29,30,41] and the design of 1,2,3-triazolyl-1,6-naphthyridin-7(6H)-ones nucleoside analogues TzNat A to C presented in this work.
Molecules 29 00687 g001

2. Results

2.1. Fluorescent Nucleosides Synthesis

Heteroaromatic nucleoside analogues possessing 1,2,3 triazoles as a linker between the nucleobase and the ribose are generally designed and synthesized using CuAAC click chemistry [42,43,44] to be used as Furo[2,3-b]pyrazine nucleoside analogues [45], nucleoside–iridium conjugates [46], Hydroxyanthracene triazolyl glycoconjugates [47], or as ligands for Cu(I) catalysis in the synthesis of quinazolinones [48]. Therefore, to design the naphtyridinone–ribose conjugate TzNat, we chose to use a CuAAC click reaction.
First, in our earlier design we attempted to link the fluorescent naphtyridinone core at the 8-position to the ribose by a 1,2,3 triazole using a CuAAC reaction to get 1,2,3-triazolyl naphtyridinone–ribose conjugate 4. To do so, we developed a strategy using azido ribofuranose 2 as an azide partner and 8-(4-ethynylphenyl)-6,7-dihydro-1,6-naphthyridin-7-one 3 as an alkyne partner (Scheme 2).
Synthesis of 8-(4-ethynylphenyl)-1,6-naphthyridin-7(6H)-one 3 was achieved following our previously reported strategy from commercially available 2-chloro-3-formylpyridine. The azide partner 2 was prepared from 1,2,3,4-tetra-O acetyl β-d-ribofuranose following a reported procedure [49]. However, attempts to realize the CuAAC click reaction between the two partners failed. The classical procedure using a combination of CuSO4 and sodium ascorbate in tertbutanol/water at various temperatures failed. The use of CuI or more activated Cu(iMes)Cl in organic solvent with a base remained unsuccessful (Scheme 3 and Table S1 in Supplementary Materials). We hypothesized that the naphtyridinone bicycle 3 was not compatible with the click conditions because of the high reactivity of the pyridone moiety acting as a ligand with the copper atom. To overcome this issue, the click reaction was performed on the opened form 5 [41], the synthetic precursor of the 8-(4-ethynylphenyl)-1,6-naphthyridin-7(6H)-one 3 [41], and the azide 2 using standard conditions. Under these conditions, the click compound 6 was obtained in 40% yield. The last step consisted of an acidic treatment to promote the concomitant deprotection of the ribose, the acetal removal, and the nitrile function hydrolysis–cyclization. Unfortunately, this step did not give satisfactory results and led to an inseparable mixture containing a majority of the starting product, a very small amount of the expected product 4, and a portion containing the mono-deacetylated sugar unit (Scheme 3).
Encouraged by this last result, we slightly modified the strategy to target triazole conjugate A or TzNat A, which has the advantage of being easily modified at the 8-position of the naphthyridinone ring, and to allow further photophysical modification. Therefore, we have envisioned performing the click reaction with the 2-chloro-3-(dimethoxymethyl)-4-ethynylpyridine 9 as the alkyne partner and the azide ribose tetraacetate 2 in the first intention (Scheme 4).
The synthesis of alkyne partner 9 was achieved in two steps. The mono-alkynylated product 7 was successfully prepared by a regioselective Sonogashira cross-coupling reaction performed in 5 min at 150 °C using a monowave apparatus. The aldehyde function of 7 was then protected as dimethoxyacetal under the mild conditions developed by Luche using methanol, cerium chloride, and trimethylorthoformate as the water scavenger [50]. Deprotection of the alkyne function appeared very sensitive due to the high reactivity of the triple bond. Two minutes were necessary to cleave the C–Si bond with K2CO3 in methanol at room temperature and obtain compound 9. The ribofuranosyl azide partner 2 was reacted with 9 by a CuAAC click reaction with CuI, diisopropylethylene diamine in dichloromethane for 24 h at reflux, affording the desired triazole 10 in good yield. The triazole 10 was subsequently engaged in a nucleophilic aromatic substitution with phenylacetonitrile and sodium hydride. However, the reaction was unsuccessful. The presence of acetate protecting groups of the ribose part was suspected to be part of the observed lack of reactivity, due to its electron-withdrawing character and its propensity to be saponified under basic conditions (Scheme 5).
Therefore, we changed the ribose acetate protecting groups for the more stable tertbutyldimethylsilylether protecting groups. Starting from 2,3,5-triacetate-β-d-ribofuranosyl azide 2, the protected tertbutyldimethylsilylether ribose azide 13 was obtained in two steps using sodium methoxide, followed by the addition of tertbutyldimethylsilylchloride and imidazole, with excellent yield (Scheme 6). Next, the CuAAC click reaction between the azide 13 and the alkyne 9 proceeded smoothly, affording the desired triazole 14 in good yield. The reaction of 14 with phenylacetonitrile in the presence of sodium hydride gave the substituted product 15 in 30% yield. Finally, the nucleoside napthyridinone TzNat A was obtained as its chlorohydrate salt in quantitative yield after acidic treatment of compound 15. This strategy was employed to successfully prepare TzNAt B possessing a 4-methoxyphenyl substituent and TzNAt C bearing a 4-bromophenyl, starting from the same precursor 14 and using 4-methoxyphenylacetonitrile and 4-bromophenylacetonitrile respectively for the nucleophilic aromatic substitution step (Scheme 6).
The structures of nucleosides TzNat A, B, and C were confirmed by NMR spectroscopy using 1D (1H, JMOD and 13C-DEPT) and 2D (COSY, HSQC, HMBC) experiments (See Supplementary Materials).

2.2. Optical Properties of TzNat Molecules

Optical properties of TzNat molecules as their chlorohydrate salts were studied in different solvents (Table 1). As their related compounds 1,6-Naphthyridin-7(6H)-ones contain a 2-hydroxypyridine system, the ribonucleoside TzNat may exist under lactim-enol and lactam-keto tautomeric forms in the ground state [41].
As shown in the UV–Vis spectra in Figure 2, TzNat A to C show similar absorption profiles. The wavelength of the maximum absorption depends strongly on the polarity of the solvent. In non-polar solvent and polar aprotic solvent, the maximum absorption is centered between 320 and 386 nm, assigned to a π–π* transition with molar extinction coefficients ranging from 17,200 to 3200 M−1 cm−1. Interestingly, a bathochromic shift of this band is observed for all the TzNat from nonpolar solvent (CHCl3, CH2Cl2) to polar aprotic solvent (THF, DMSO, DMF, DMSO, acetone). This phenomenon is more pronounced for TzNat B possessing a para-methoxyphenyl group, for which a red-shift of 70 nm was found for the position of the maximum absorption in EtOH or DMSO relating to nonpolar solvent CHCl3 or CH2Cl2. This observed red-shift of the maximum absorption band from non-polar to polar solvent can be rationalized by the existence of an intramolecular charge transfer generated between the electron-donating group para-methoxy phenyl and the 1,2,3-triazole ring acting as an acceptor group [51].
A less intense band (ε = 6700 to 400 M−1·cm−1) centered at 459–474 nm is also observed in all solvents and is enhanced in non-polar solvent (CHCl3, CH2Cl2) as well as in protic solvent EtOH. However, in aqueous solvent (H2O and PBS), maximum absorption wavelengths of TzNat A to C ranging from 425 to 435 nm are recorded. This band is blue-shifted by 20 nm compared with that recorded in ethanol.
Overall, the UV properties of these molecules are in accordance with those recorded for 1,6-Naphthyridin-7(6H)-ones [41]. The maximum absorption ranging from 320 to 386 nm can be assigned to π→π* transition of the lactim form, whereas the absorption shift ranging from 425 to 474 nm could be related to the lactam form stabilized by intermolecular hydrogen bond with solvent.
The fluorescence properties of TzNat molecules were studied in solvents with different polarity (Table 1). Stokes shifts and fluorescence quantum yields (Φ) were determined in each solvent. The corresponding spectra are represented in Figure 3. Spectra recorded upon excitation at 320–386 nm in polar aprotic solvent acetone, THF, DMF, and DMSO show an emission band for the three molecules ranging from 458–502 nm, with modest Stokes shifts of 5300 to 6500 cm−1 and quantum yield up to Φ = 0.34 for TzNat B in THF. In particular, TzNat B shows a red-shift of emission wavelength (+10 nm) and a higher quantum yield compared to TzNat A and C when placed in a medium of increased polarity. The red-shift can be explained by dipole–dipole interactions between the excited fluorophore and the surrounding molecules decreasing the excited-state energy, which is more noticeable for molecule B possessing a donor–acceptor system. In addition, the dramatic increase in emission quantum yield (×15) in DMF and DMSO observed for TzNat B is in accordance with the presence of an intramolecular charge transfer (ICT) stabilized in a high polar solvent as mentioned above.
Interestingly, for TzNat A and C possessing a phenyl and a para-bromophenyl group respectively, an additional emission band is observed in DMSO and DMF at 560 nm.
Surprisingly, upon excitation of the lactim form at 320–386 nm in non-polar solvent CHCl3 and CH2Cl2 and in polar protic solvent EtOH, TzNat A, B, and C show very weak fluorescence emission centered at 470–490 nm, accompanied by a drop in quantum efficiency (Φ < 0.01). Fluorescence quenching was also observed in aqueous solvent H2O and PBS buffer after excitation at 420–430 nm corresponding to the lactam form (Φ < 0.01).
By analogy with parent 1,6-Naphthyridin-7(6H)-ones, the solvatochromic behavior of TzNat molecules, showing distinct bands in absorption and emission depending on the polarity of the solvent, could be rationalized by the presence of lactam and lactim forms in equilibrium. A lactim form would correspond to the high energy band at 458–502 nm which is favored in polar aprotic solvent, with a red-shift for TzNat B of 30 nm related to TzNat A and C.
The lactam form of TzNat generated by a proton transfer of the lactim form isomer at the excited state is thought to be responsible for the low-energy band at 560 nm in polar solvent for molecules substituted by a phenyl (TzNat A) and a para-bromo phenyl group (TzNat C). However, the lactam form is not observed for TzNat B due to the ICT.
The quench of fluorescence in protic solvent could be explained by the nonradiative relaxation of the excited fluorophores enhanced by the polarity of the environment and hydrogen bonding with protic solvent molecules. Therefore, a twisted intramolecular charge transfer (TICT) resulting from the shift of the π-electron density on the donor–acceptor system at the excited state could also be involved to explain the quenching of the fluorescence in a protic solvent [52]. The twisted conformation is usually enhanced in a highly polar solvent possessing H-bonds and leads to full charge separation and a bathochromic shift. Indeed, in H2O, the weak emission band (Φ < 0.01) of the lactam form is observed red-shifted to 560 nm, and a second band of weak intensity centered at 560 nm is also observed in DMSO and DMF, which could be attributed to the TICT emission from the lactam form (Figure 4).
Nucleosides TzNat A, B, and C are environmentally sensitive fluorescent molecules, which are emissive in polar aprotic solvents with an enhanced quantum yield in the presence of charge transfer (TzNat B) and much less emissive in H2O. This dramatic change of emissivity can be used to probe interactions with surrounding molecules or as a reported group to study interactions with enzymes in incorporated oligomer [25].
Conformational studies of the triazole nucleosides TzNat AC with computational methods will yield additional information about favored conformers, and help to rationalize the optical behavior and give evidence of the TICT mechanism. In-depth photo-physical studies of these compounds is currently under investigation.

3. Materials and Methods

3.1. General Information

All reagents and solvents were purchased from commercial suppliers, Sigma-Aldrich, TCI (Europe), Alfa Aesar, or Fluorochem. The monowave reactor is a conventionally heated synthesis reactor from Anton Paar. Infra-red spectra were recorded on ATR VariGATR crystal Ge. All reactions were monitored by TLC on silica gel 60 F254 plates and revealed using UV lamp (l 254 nm). Flash chromatography was carried out on a Merck silica gel 60 F 254. Reactions involving air- or moisture-sensitive reagents were carried out under an inert atmosphere (argon) with oven-dried glassware. THF was distillated over sodium/benzophenone. All final compounds were analyzed by high-resolution ESI mass spectrometry (HRMS) in MeOH using a LTQ-Orbitrap XL mass spectrometer (Thermo Scientific, San Jose, CA, USA) equipped with an electrospray ion source. NMR spectra were recorded on a Bruker Avance spectrometer at 300 or 400 MHz for 1H and 100 MHz for 13C. 2D NMR experiments such as 1H-1H COSY and 1H-13C HSQC experiments were performed to enable signal attributions. UV–Vis absorption spectra were measured using a Cary 50 (Varian) spectrophotometer at 20 °C. Emission spectra were performed on a JASCO J-815 CD spectrofluorometer at 20 °C. Quantum yields were determined with a Fluoromax+ (Jobin Yvon) equipped with a quanta phi integration sphere. Data were treated with the dedicated software provided by the supplier. Measurements were performed at room temperature. Synthesis and data concerning compounds 3 and compounds 5 are already described [29].

3.2. Attempts to Prepare Triazole Conjugate 4 from Acetylated Ribosyl Azide 2 and Compounds 5

3.2.1. Synthesis of 2,3,5-Tri-O-acetyl-β-d-ribofuranosyl Azide 2

Trimethylsilyl azide (2.9 mL, 21.98 mmol) and tin chloride 1 M in heptane (4.7 mL, 4.7 mmol) were added to a stirred solution of 1,2,3,5-Tetra-O-acetyl-β-d-ribofuranose (5 g, 15.7 mmol) in dry DCM (40 mL). The reaction mixture was stirred at rt under argon for 20 h. The solution was washed with Na2CO3 + NaCl (10 mL + 20 mL), and the aqueous layer was extracted with DCM (2 × 30 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated under vacuum. The resulting residue was purified by silica gel chromatography (Cyclohexane/EtOAc 7/3) to afford the desired compound as a colorless oil. Mpure = 4.8 g, Yield: quantitative. 1H NMR (300 MHz, Chloroform-d) δ 5.45–5.22 (m, 2H, H5), 5.12 (s, 1H, H1), 4.54–4.23 (m, 2H, H3/H4), 4.23–4.00 (m, 1H, H2), 2.21–1.93 (m, 9H, OAc). HRMS (ESI+): Calcd for C11H15N3O7Na 324.0802; found 324.0805 [M + Na]+. Spectral data of 2 were in agreement with the literature [49].

3.2.2. Synthesis of (2R,3R,4R,5R)-2-(4-(4-((3-(1,3-dioxolan-2-yl)pyridin-2-yl)(cyano)methyl)phenyl)-1H-1,2,3-triazol-1-yl)-5-(acetoxymethyl)tetrahydrofuran-3,4-diyl Diacetate 6

CuSO4·5H2O (4.2 mg, 10% mmol) and sodium ascorbate (10 mg, 30% mmol) were added to a stirred solution of compound 5 (50 mg, 0.17 mmol) and azide 2 (51 mg, 0.17 mmol) in tBuOH/H2O (150 μL v/v 1:1). The reaction mixture was stirred at rt for 5 h. Then, an aqueous solution of EDTA 0.1 M (2 mL) was added to the mixture, and the solution was extracted with EtOAc (3 × 5 mL). The combined organic layers were washed with an aqueous solution of EDTA 0.1 M (3 × 5 mL), dried over MgSO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (Cyclohexane/EtOAc 6/4, Rf = 0.21) to afford the title compound as a white oil. M = 40 mg. Yield: 40%. 1H NMR (400 MHz, Chloroform-d) δ 8.66 (d, J = 4.7 Hz, 1H, H1), 8.03 (s, 1H, H18), 7.91 (d, J = 7.6 Hz 1H, H3), 7.81 (d, J = 8.0 Hz, 2H, H14/15), 7.55 (d, J = 8.0 Hz, 2H, H12/13), 7.30 (dd, J = 8, 4.8Hz, 1H, H2), 6.18 (d, J = 3.7 Hz, 1H, H1′), 6.00–5.84 (m, 3H, H6/9/4′), 5.63 (t, J = 5.4 Hz, 1H, H3′), 4.50 (m, 1H, H2′), 4.25 (dd, J = 12.4, 4.4 Hz, 1H, H5′a), 4.17–4.04 (m, 5H, H7/8/5′b), 2.19–1.99 (m, 9H, OAc). 13C NMR (100 MHz, Chloroform-d) δ 170.7, 169.8, 169.7, 153.6, 150.7, 147.8, 136.1, 135.3, 131.5, 130.5, 129.3, 126.8, 123.5, 119.4, 101.2, 90.5, 81.4, 74.7, 71.17, 65.8, 65.7, 63.2, 60.8, 47.7, 21.1, 20.9, 20.8, 14.6. IR (cm−1): 2971, 2360, 1747, 1445, 1373, 1229, 1112, 1073, 805. HRMS (ESI+) Calcd for C29H29N5O9H 592.2038; found 592.2035 [M + H]+.

3.3. Synthesis of the Alkyne Partner 9 for the Click Reaction

3.3.1. Synthesis of 2-chloro-4-((trimethylsilyl)ethynyl)nicotinaldehyde 7

In a monowave vial (10 mL), 4-iodo-2-chloro-3-pyridine carboxaldehyde (1 g, 3.74 mmol) was dissolved in THF (6 mL). Ethynyltrimethylsilane (570 μL, 4.11 mmol), CuI (7 mg, 0.037 mmol), PdCl2(PPh3)3 (52 mg, 0.075 mmol), and NEt3 (1.58 mL, 11.22 mmol) were added into the vial. The reaction was heated using the mode “as fast as possible” at 150 °C for 10 min. The mixture was filtered on celite® and washed with DCM. The residue was purified by silica gel chromatography (cyclohexane/Et2O 5%, Rf = 0.57) to afford the title compound as a yellow-brown solid. M = 400 mg. Yield: 45%. 1H NMR (300 MHz, Chloroform-d) δ 10.56 (s, 1H), 8.48 (d, J = 5.0 Hz, 1H), 7.42 (d, J = 5.1 Hz, 1H), 0.32 (s, 9H). 13C NMR (100 MHz, Chloroform-d) δ 188.2, 152.2, 152.0, 135.3, 128.9, 127.1, 109.8, 98.3, −0.6. HRMS (ESI+) Calcd for C11H12ClNOSiH 238.0449; found: 238.0450 [M + H]+.

3.3.2. Synthesis of 2-chloro-3-(dimethoxymethyl)-4-((trimethylsilyl)ethynyl)pyridine 8

Compound 7 (455 mg, 1.94 mmol) dissolved in MeOH (5 mL) was added to a stirred solution of CeCl3 (479 mg, 1.94 mmol) and trimethyl orthoformate CH(OCH3)3 (1.37 mL, 6.26 mmol) in MeOH (2 mL). The reaction mixture was heated at 60 °C until complete conversion of the starting material. The solution was neutralized with a saturated aqueous solution of NaHCO3 (10 mL). The aqueous layer was extracted with DCM (2 × 10 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated under pressure to afford the title compound without further purification as an oil. M = 493 mg. Yield: 89%. Rf = 0.42 (cyclohexane/Et2O 8/2). 1H NMR (300 MHz, Chloroform-d) δ 8.30 (d, J = 5.0 Hz, 1H), 7.29 (d, J = 5.0 Hz, 1H), 5.81 (s, 1H), 3.49 (s, 6H), 0.31 (s, 9H). 13C NMR (100 MHz, Chloroform-d) δ 149.2, 134.0, 133.0, 126.7, 106.8, 104.1, 100.2, 56.1, −0.1. HRMS (ESI+) Calcd for C13H18ClNO2SiH 284.0868; found: 284.0869 [M + H]+.

3.3.3. Synthesis of 2-chloro-3-(dimethoxymethyl)-4-ethynylpyridine 9

K2CO3 (623 mg, 4.5 mmol) was added to a stirred solution of compound 8 (850 mg, 3 mmol) in MeOH (20 mL). The reaction mixture was stirred at rt for 2 min. The solution was immediately quenched with water (20 mL). The aqueous layer was extracted with DCM (3 × 20 mL). The combined organic layers were dried over MgSO4, filtered, and concentrated under reduced pressure to afford a crude product which was engaged in the next step without further purification. M = 556 mg. Yield: 84%. Rf = 0.25 (cyclohexane/Et2O 8/2). 1H NMR (400 MHz, Chloroform-d) δ 8.32 (d, J = 5.0 Hz, 1H), 7.36 (d, J = 5.0 Hz, 1H), 5.76 (s, 1H), 3.60 (s, 1H), 3.49 (s, 6H). 13C NMR (100 MHz, Chloroform-d) δ 151.0, 148.8, 132.9, 132.2, 127.3, 103.6, 87.3, 78.9, 55.8. IR (cm−1): 3217, 2995, 2940, 2838, 2107, 1573, 1531, 1371, 1210, 1184, 1060, 961, 827.HRMS (ESI+) Calcd for C10H10ClNO2H 212.0473, found: 212.0473 [M + H]+.

3.4. Synthesis of Target 1,2,3 Triazole Nucleoside TzNat A, B, and C

3.4.1. Synthesis of (2R,3R,4R,5R)-2-(acetoxymethyl)-5-(4-(2-chloro-3-(dimethoxymethyl)pyridin-4-yl)-1H-1,2,3-triazol-1-yl)tetrahydrofuran-3,4-diyl Diacetate 10

CuI (79 mg, 0.42 mmol), DIPEA (182 μL, 1.05 mmol) and compound 9 (65 mg, 0.21 mmol) were added to a stirred solution of compound 2 (45.5 mg, 0.21 mmol) in DCM (3 mL). The reaction mixture was stirred at 40 °C for 7 h. Then an aqueous solution of EDTA 0.1 M (10 mL) was added to the mixture which was stirred for 1 h until the organic layer was colorless. The organic layer was dried over MgSO4, filtered and concentrated under reduced pressure. The crude was purified by silica gel chromatography (Cyclohexane/EtOAc 1/1) to afford the title compound as a colorless oil, mpure = 70 mg. Yield: 65%. 1H NMR (300 MHz, Chloroform-d) δ 8.50 (s, 1H), 8.38 (d, J = 5.1 Hz, 1H), 8.04 (d, J = 5.1 Hz, 1H), 6.18 (d, J = 3.6 Hz, 1H), 5.90–5.84 (m, 2H), 5.64 (t, J = 5.4 Hz, 1H), 4.51–4.39 (m, 2H,), 4.28–4.13 (m, 1H), 3.39 (s, 6H), 2.14–2.00 (m, 9H). 13C NMR (100 MHz, Chloroform-d) δ 170.4, 169.4, 169.2, 151.7, 149.5, 143.2, 140.3 126.6, 123.9, 104.8, 90.0, 80.9, 77.2, 74.4, 70.8, 62.9, 56.1, 56.0, 20.6, 20.4, 20.4. HRMS (ESI+) Calcd for C21H25ClN4O9Na 535.1202; found: 535.1199 [M + Na]+.

3.4.2. Synthesis of β-d-ribofuranosyl Azide 12

A freshly prepared solution of MeONa (1 M in MeOH) was added to a stirred solution of 2,3,5-tri-O-acetate-β-d-ribofuranosyl azide (4.8 g, 15.9 mmol) in MeOH (90 mL). The reaction mixture was stirred for 5 min at rt and quenched with DOWEX resin. The suspension was vigorously stirred for 10 min, and the resin was filtered and washed with DCM. The desired compound was obtained as a pure colorless oil without purification. Mpure = 2.7 g. Yield: quantitative. 1H NMR (300 MHz, Methanol-d4) δ 5.21 (d, J = 1.9 Hz, 1H), 4.10–4.05 (m, 1H), 4.02–3.97 (m, 1H), 3.84–3.82 (m, 1H), 3,76 (m, 1H), 3.63 (dd, J = 12.0, 5.5 Hz, 1H) HRMS (ESI+): Calcd for C5H8N3O4 174.0520; found 174.0522 [M − H]. Spectral data of 12 were in agreement with the literature [53].

3.4.3. Synthesis of 2,3,5-Tri-O-(tertbutyldimethylsilyle)-β-d-ribofuranosyl Azide 13

Imidazole (3.9 g, 57 mmol) and tertbutyldimethylchlorosilane (8.2 g, 54 mmol) were added to a stirred solution of D-ribofuranosyl azide (2.7 g, 15.4 mmol) in DMF (30 mL). The reaction mixture was stirred for 24 h at rt. The mixture was quenched with a saturated aqueous solution of NaHCO3, and the aqueous layer was extracted with DCM (3 × 40 mL). The combined organic layers were washed with water (3 × 50 mL), dried over MgSO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (Cyclohexane/Et2O 5%, Rf = 0.20) to afford the title compound as a white solid. M = 6.1 g. Yield: 76%. 1H NMR (300 MHz, Chloroform-d) δ 5.10 (d, J = 2.7, 1H, H1′), 4.20 (dd, J = 5.9, 4.0 Hz, 1H, H3′), 4.01 (dt, J = 6.2, 3.2, 1H, H4′), 3.82 (m, 1H, H2′), 3.82 (dd, J = 11.5, 3.4 Hz, 1H, H5′) 3.67 (dd, J = 11.5, 3.4 Hz, 1H, H5′), 0.92 (s, 9H, H7′), 0.91 (s, 9H, H7′), 0.90 (s, 9H, H7′), 0.11–0.08 (s, 18H, H6′). 13C NMR (100 MHz, Chloroform-d) δ 94.7 (CH1′), 84.3 (CH4′), 76.5 (CH2′), 71.1 (CH3′), 62.1(CH5′), 25.9 (CH7′), 25.8 (CH7′), 25.8 (CH7′), −4.4, −4.6, −5.5 (CH6′). IR (cm−1): 2951, 2931, 2859, 2117, 1472, 1142, 1128, 1073, 999, 777. HRMS (ESI+): Calcd for C23H51N3O4Si3Na 540.3080. Found 540.3080 [M + Na]+.

3.4.4. Synthesis of 4-(1-((2R,3R,4R,5R)-3,4-bis((tert-butyldimethylsilyl)oxy)-5-(((tert-butyldimethylsilyl)oxy)methyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-2-chloro-3-(dimethoxymethyl)pyridine 14

Under inert condition, in a sealed tube, CuI (1.06 g, 5.56 mmol), DIPEA (2.40 mL, 14 mmol), and compound 13 (1.58 g, 3.06 mmol) were added portionwise to a stirred solution of compound 9 (588 mg, 2.78 mmol) in DCM (23 mL). The reaction mixture was stirred at 40 °C for 24 h. Then, the solution was cooled to room temperature and an aqueous solution of EDTA 0.1 M (50 mL) was added to the mixture, which was stirred for 1 h until the organic layer was colorless. The aqueous layer was extracted with DCM (3 × 20 mL). The combined organic layers were washed with a solution of EDTA 0.1 M until the aqueous layer was colorless, with water (20 mL) and brine (20 mL). Then, it was dried over MgSO4, filtered, and concentrated under reduced pressure. The crude was purified by silica gel chromatography (cyclohexane/Et2O 20%, Rf = 0.30) to afford the title compound as a yellow oil. M = 1.8 g. Yield: 89%. 1H NMR (400 MHz, Chloroform-d) δ 8.40 (s, 1H, H10), 8.38 (d, J = 5.1 Hz, 1H, H5), 8.01 (d, J = 5.1 Hz, 1H, H4), 5.91 (d, J = 4.8 Hz, 1H, H1′), 5.84 (s, 1H, H6), 4.80 (t, J = 4.8 Hz, H2′), 4.35 (t, J = 3.9 Hz, 1H, H3′), 4.15 (q, J = 4.6, 4.3 Hz, 1H, H4′), 3.80 (dd, J = 11.1, 5.4 Hz, 1H, H5′), 3.75 (dd, J = 11.1, 5.4 Hz, 1H, H5′), 3.37 (s, 3H, H7), 3.41 (s, 3H, H8), 0.97 (s, 9H, H7′), 0.87 (s, 9H, H7′), 0.84 (s, 9H, H7′), 0.12 (s, 6H, H6′), 0.04 (s, 3H, H6′), 0.03 (s, 3H, H6′), 0.01 (s, 3H, H6′), −0,14 (s, 3H, H6′). 13C NMR (100 MHz, Chloroform-d) δ 151.8 (C3), 149.5 (CH5), 142.8 (C1), 140.9 (C9), 128.0 (C2), 127.4 (CH10), 124.1 (CH4), 104.9 (CH6), 92.3 (CH1′), 86.3 (CH4′), 76.3 (CH2′), 72.5 (CH3′), 63.1 (CH5′), 56.2 (CH7/8), 56.1 (CH7/8), 27.0 (CH7′), 18.5 (C8′), 18.1 (C8′), 18.1 (C8′), −4.3 (CH6′), −4.6 (CH6′), −5.0 (CH6′), −5,3 (CH6′), −5.4 (CH6′), 5.86 (CH6′). IR (cm−1): 2953, 2930, 2896, 2857, 1253, 1110, 1076, 836, 777. HRMS (ESI+) Calcd for C33H61ClN4O6Si3Na 751.3480. Found 751.3480 [M + Na]+.

3.4.5. Synthesis of 2-(4-(1-((2R,3R,4R,5R)-3,4-bis((tert-butyldimethylsilyl)oxy)-5-(((tert-butyldimethylsilyl)oxy)methyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-3-(dimethoxymethyl)pyridin-2-yl)-2-phenylacetonitrile 15

Under inert conditions, in a sealed tube, sodium hydride (3 equiv., 60% in oil) was added to a stirred solution of compound 14 (255.3 mg, 0.35 mmol) in dry THF (0.18 M). Phenylacetonitrile (80 μL, 0.7 mmol.) was added in one portion, and the reaction mixture was refluxed for 20 h. The solution was cooled to room temperature and quenched by addition of water. The compound was extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over MgSO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (Cyclohexane/Et2O 8/2, Rf = 0.21) to afford the title compound as a yellow oil and as a mixture of two diastereoisomers: 55/45. M = 85 mg. Yield: 30%. 1H NMR (400 MHz, CDCl3) δ 8.62 (d, J = 2.5 Hz, 1H, H5, dia 1), 8.60 (d, J = 2.5 Hz, 1H, H5, dia 2), 8.09 (s, 1H, H10, dia 1 or dia 2), 8.08 (s, 1H, H10, dia 1 or dia 2), 7.60–7.58 (m, 2H, H12,16, dia 1 or dia 2), 7.58–7.56 (m, 2H, H12,16, dia 1 or dia 2), 7.37–7.34 (m, 2H, H13,15, dia 1), 7.34–7.31 (m, 2H, H13,15, dia 2), 7.30–7.28 (m, 2H, H14, dia 1), 7.28–7.26 (m, 2H, H14, dia 2), 7.22 (d, J = 5.0 Hz, 1H, H4, dia 1 or dia 2), 7.20 (d, J = 5.0 Hz, 1H, H4, dia 1 or dia 2), 6.49 (s, 1H, H11, dia 1 or dia 2), 6.48 (s, 1H, H11, dia 1 or dia 2), 6.08 (d, J = 2.4 Hz, 1H, H1′, dia 1), 6.06 (d, J = 2.3 Hz, 1H, H1′, dia 2), 5.83 (s, 1H, H6, dia 1 or dia 2), 5.83 (s, 1H, H6, dia 1 or dia 2), 4.64–4.59 (m, 1H, H2′, dia 2), 4.60–4.58 (m, 1H, H2′, dia 1), 4.30–4.27 (m, 1H, H3′, dia 2), 4.27–4.24 (m, 1H, H3′, dia 1), 4.20–4.18 (m, 1H, H4′, dia 1), 4.18–4.16 (m, 1H, H4′, dia 2), 3.93–3.91 (m, 1H, H5′, dia 2), 3.90–3.88 (m, 1H, H5′, dia 1), 3.79 (d, J = 2.9 Hz, 1H, H5′, dia 1), 3.77 (d, J = 2.9 Hz, 1H, H5′, dia 2), 3.49 (s, 3H, H7 or H8, dia 1 or dia 2), 3.45 (s, 3H, H7 or H8, dia 1 or dia 2), 3.42 (s, 3H, H7 or H8, dia 1 or dia 2), 3.40 (s, 3H, H7 or H8, dia 1 or dia 2), 0.95 (s, 1H, H7′, dia 1 or dia 2), 0.94 (s, 9H, H7′, dia 1 or dia 2), 0.89 (s, 9H, H7′, dia 1 or dia 2), 0.88 (s, 9H, H7′, dia 1 or dia 2), 0.86 (s, 9H, H7′, dia 1 or dia 2), 0.85 (s, 9H, H7′, dia 1 or dia 2), 0.13 (s, 3H, H6′, dia 1 or dia 2), 0.12 (s, 3H, H6′, dia 1 or dia 2), 0.12 (s, 3H, H6′, dia 1 or dia 2), 0.11 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.07 (s, 3H, H6′, dia 1 or dia 2), 0.01 (s, 3H, H6′, dia 1), 0.00 (s, 3H, H6′, dia 2), −0.14 (s, 3H H6′, dia 1), −0.16 (s, 3H, H6′, dia 2). 13C NMR (101 MHz, CDCl3) δ 156.3 (C1, dia 1 or dia 2), 156.3 (C1, dia 1 or dia 2), 149.8 (C5, dia 1 or dia 2), 149.8 (C5, dia 1 or dia 2), 144.6 (C9, dia 1 or dia 2), 144.6 (C9, dia 1 or dia 2), 138.8 (C3, dia 1 or dia 2), 138.7 (C3, dia 1 or dia 2), 136.0 (C17, dia 1 or dia 2), 136.0 (C17, dia 1 or dia 2), 130.1 (C2, dia 1 or dia 2), 130.1 (C2, dia 1 or dia 2), 128.8 (C12,16 or C13,15, dia 1 or dia 2), 128.7 (C12,16 or C13,15, dia 1 or dia 2), 128.7 (C12,16 or C13,15, dia 1 or dia 2), 127.8 (C12,16 or C13,15, dia 1 or dia 2), 127.8 (C14, dia 1 or dia 2), 127.8 (C14, dia 1 or dia 2), 123.0 (C4, dia 1 or dia 2), 122.9 (C4, dia 1 or dia 2), 122.6 (C10, dia 1 or dia 2), 122.6 (C10, dia 1 or dia 2), 120.3 (CN, dia 1 or dia 2), 120.2 (CN, dia 1 or dia 2), 103.2 (C6, dia 1 or dia 2), 103.2 (C6, dia 1 or dia 2), 92.9 (C1′, dia 1 or dia 2), 92.8 (C1′, dia 1 or dia 2), 86.8 (C4′, dia 1 or dia 2), 86.6 (C4′, dia 1 or dia 2), 77.2 (C2′, dia 1 or dia 2), 77.2 (C2′, dia 1 or dia 2), 72.6 (C3′, dia 1 or dia 2), 72.4 (C3′, dia 1 or dia 2), 62.9 (C5′, dia 1 or dia 2), 62.8 (C5′, dia 1 or dia 2), 56.3 (C7 or C8, dia 1 or dia 2), 56.2 (C7 or C8, dia 1 or dia 2), 55.9 (C7 or C8, dia 1 or dia 2), 55.9 (C7 or C8, dia 1 or dia 2), 41.6 (C11, dia 1 or dia 2), 41.5 (C11, dia 1 or dia 2), 26.1 (3C7′, dia 1 or dia 2), 26.1 (3C7′, dia 1 or dia 2), 25.9 (3C7′, dia 1 or dia 2), 25.9 (3C7′, dia 1 or dia 2), 25.9 (3C7′, dia 1 or dia 2), 25.9 (3C7′, dia 1 or dia 2), 18.1 (3C8′, dia 1 or dia 2), 18.1 (3C8′, dia 1 or dia 2), −4.3 (2C6′, dia 1 or dia 2), −4.3 (2C6′, dia 1 or dia 2), −4.5 (2C6′, dia 1 or dia 2), −4.5 (2C6′, dia 1 or dia 2), −5.0 (2C6′, dia 1 or dia 2), −5.0 (2C6′, dia 1 or dia 2). IR (cm−1): 2953, 2930, 2857, 2359, 2341, 2254, 1595, 1494, 1259, 1253, 1109, 1074, 836, 779. HRMS (ESI) m/z: [M + H]+ Calcd for C41H67N5O6Si3H 810.4472. Found 810.4476.

3.4.6. Synthesis of 2-(4-(1-((2R,3R,4R,5R)-3,4-bis((tert-butyldimethylsilyl)oxy)-5-(((tert-butyldimethylsilyl)oxy)methyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-3-(dimethoxymethyl)pyridin-2-yl)-2-(4-methoxyphenyl)acetonitrile 16

Under inert condition, in a sealed tube, sodium hydride (3 equiv., 60% in oil) was added to a stirred solution of compound 14 (295 mg, 0.4 mmol) in dry THF (0.2 M). 4-methoxyphenylacetonitrile (108.5 μL, 0.80 mmol) was added in one portion, and the reaction mixture was refluxed for 48 h. The solution was cooled to room temperature and quenched by addition of water. The compound was extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over MgSO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (Cyclohexane/Et2O 7/3, Rf = 0.28) to afford the title compound as a yellow oil and as a mixture of two diastereoisomers: M = 85.2 mg. Yield: 25%. 1H NMR (300 MHz, CDCl3) δ 8.62 (d, J = 1.8 Hz, 1H, H5, dia 1), 8.61 (d, J = 1.8 Hz, 1H, H5, dia 2), 8.09 (s, 1H, H10, dia 1 or dia 2), 8.08 (s, 1H, H10, dia 1 or dia 2), 7.55–7.51 (m, 2H, H13,17, dia 1 or dia 2), 7.51–7.48 (m, 2H, H13,17, dia 1 or dia 2), 7.21 (d, J = 5.2 Hz, 1H, H4, dia 2), 7.19 (d, J = 5.6 Hz, 1H, H4, dia 1), 6.89–6.86 (m, 2H, H13,16, dia 1 or dia 2), 6.86–6.83 (m, 2H, H13,16, dia 1 or dia 2), 6.42 (s, 1H, H11, dia 1 or dia 2), 6.41 (s, 1H, H11, dia 1 or dia 2), 6.08 (d, J = 1.9 Hz, 1H, H1′, dia 1), 6.06 (d, J = 1.7 Hz, 1H, H1′, dia 2), 5.82 (s, 1H, H6, dia 1 or dia 2), 5.82 (s, 1H, H6, dia 1 or dia 2), 4.64–4.60 (m, 1H, H2′, dia 2), 4.60–4.56 (m, 1H, H2′, dia 1), 4.30–4.26 (m, 1H, H3′, dia 2), 4.26–4.23 (m, 1H, H3′, dia 1), 4.20–4.18 (m, 1H, H4′, dia 1), 4.18–4.15 (m, 1H, H4′, dia 2), 3.94–3.90 (m, 1H, H5′, dia 2), 3.90–3.87 (m, 1H, H5′, dia 1), 3.83–3.74 (m, 1H, H5′, dia 1), 3.78 (s, 3H, H18, dia 1 or dia 2), 3.78 (s, 3H, H18, dia 1 or dia 2), 3.77–3.74 (m, 1H, H5′, dia 2), 3.49 (s, 3H, H7 or H8, dia 1 or dia 2), 3.45 (s, 3H, H7 or H8, dia 1 or dia 2), 3.41 (s, 3H, H7 or H8, dia 1 or dia 2), 3.39 (s, 3H, H7 or H8, dia 1 or dia 2), 0.94 (s, 9H, H7′, dia 1 or dia 2), 0.94 (s, 9H, H7′, dia 1 or dia 2), 0.89 (s, 9H, H7′, dia 1 or dia 2), 0.87 (s, 9H, H7′, dia 1 or dia 2), 0.86 (s, 9H, H7′, dia 1 or dia 2), 0.85 (s, 9H, H7′, dia 1 or dia 2), 0.12 (s, 3H, H6′, dia 1 or dia 2), 0.12 (s, 3H, H6′, dia 1 or dia 2), 0.11 (s, 3H, H6′, dia 1 or dia 2), 0.11 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.07 (s, 3H, H6′, dia 1 or dia 2), 0.00 (s, 3H, H6′, dia 1 or dia 2), 0.00 (s, 3H, H6′, dia 1 or dia 2), −0.15 (s, 3H, H6′, dia 1 or dia 2), −0.17 (s, 3H, H6′, dia 1 or dia 2). 13C NMR (75 MHz, CDCl3) δ 159.2 (C15, dia 1 or dia 2), 159.1 (C15, dia 1 or dia 2), 156.5 (C1, dia 1 or dia 2), 156.5 (C1, dia 1 or dia 2), 149.8 (C5, dia 1 or dia 2), 149.8 (C5, dia 1 or dia 2), 144.7 (C9, dia 1 or dia 2), 144.6 (C9, dia 1 or dia 2), 138.7 (C3, dia 1 or dia 2), 138.7 (C3, dia 1 or dia 2), 130.0 (C2, dia 1 or dia 2), 130.0 (C2, dia 1 or dia 2), 129.9 (C13,14, dia 1 or dia 2), 129.9 (C13,14, dia 1 or dia 2), 128.1 (C12, dia 1 or dia 2), 128.1 (C12, dia 1 or dia 2), 122.9 (C4, dia 1 or dia 2), 122.9 (C4, dia 1 or dia 2), 122.6 (C10, dia 1 or dia 2), 122.5 (C10, dia 1 or dia 2), 120.5 (CN, dia 1 or dia 2), 120.5 (CN, dia 1 or dia 2), 114.0 (C14,16, dia 1 or dia 2), 114.0 (C14,16, dia 1 or dia 2), 103.2 (C6, dia 1 or dia 2), 103.2 (C6, dia 1 or dia 2), 92.9 (C1′, dia 1 or dia 2), 92.8 (C1′, dia 1 or dia 2), 86.8 (C4′, dia 1 or dia 2), 86.6 (C4′, dia 1 or dia 2), 77.4 (C2′, dia 1 or dia 2), 77.3 (C2′, dia 1 or dia 2), 72.6 (C3′, dia 1 or dia 2), 72.4 (C3′, dia 1 or dia 2), 62.9 (C5′, dia 1 or dia 2), 62.8 (C5′, dia 1 or dia 2), 56.2 (C7 or C8, dia 1 or dia 2), 56.2 (C7 or C8, dia 1 or dia 2), 55.9 (C7 or C8, dia 1 or dia 2), 55.9 (C7 or C8, dia 1 or dia 2), 55.4 (C18, dia 1 or dia 2), 55.4 (C18, dia 1 or dia 2), 40.7 (C11, dia 1 or dia 2), 40.7 (C11, dia 1 or dia 2), 26.1 (3C, C7′, dia 1 or dia 2), 26.1 (3C, C7′, dia 1 or dia 2), 25.9 (3C, C7′, dia 1 or dia 2), 25.9 (3C, C7′, dia 1 or dia 2), 25.8 (3C, C7′, dia 1 or dia 2), 18.5 (C8′, dia 1 or dia 2), 18.5 (C8′, dia 1 or dia 2), 18.2 (C8′, dia 1 or dia 2), 18.2 (C8′, dia 1 or dia 2), 18.1 (C8′, dia 1 or dia 2), 18.1 (C8′, dia 1 or dia 2), −4.3 (C6′, dia 1 or dia 2), −4.3 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −5.0 (C6′, dia 1 or dia 2), −5.0 (C6′, dia 1 or dia 2), −5.1 (C6′, dia 1 or dia 2), −5.1 (C6′, dia 1 or dia 2) −5.3 (C6′, dia 1 or dia 2), −5.3 (C6′, dia 1 or dia 2). IR (cm−1): 2952, 2930, 2857, 2359, 2342, 2254, 1596, 1254, 1108, 1073, 836, 778. HRMS (ESI) m/z: [M + H]+ Calcd for C42H69N5O7Si3H 840.4578. Found 840.4581.

3.4.7. Synthesis of 2-(4-(1-((2R,3R,4R,5R)-3,4-bis((tert-butyldimethylsilyl)oxy)-5-(((tert-butyldimethylsilyl)oxy)methyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-3-(dimethoxymethyl)pyridin-2-yl)-2-(4-bromophenyl)acetonitrile 17

Under inert condition, in a sealed tube, sodium hydride (3 equiv., 60% in oil) was added to a stirred solution of compound 14 (297 mg, 0.41 mmol) in dry THF (0.2 M). 4-bromophenylacetonitrile (155.8 mg, 0.82 mmol) was added in one portion, and the reaction mixture was refluxed for 72 h. The solution was cooled to room temperature and quenched by addition of water. The compound was extracted three times with ethyl acetate. The combined organic layers were washed with brine, dried over MgSO4, filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (Cyclohexane/Et2O 7/3, Rf = 0.24) to afford the title compound as an orange oil and as a mixture of two diastereoisomers. M = 102 mg. Yield: 28%. 1H NMR (300 MHz, CDCl3) δ 8.60 (d, J = 1.4 Hz, 1H, H5, dia 1), 8.59 (d, J = 1.4 Hz, 1H, H5, dia 2), 8.10 (s, 1H, H10, dia 1 or dia 2), 8.10 (s, 1H, H10, dia 1 or dia 2), 7.48–7.47 (m, 4H, H13,14,16,17, dia 1 or dia 2), 7.47–7.46 (m, 4H, H13,14,16,17, dia 1 or dia 2), 7.21 (d, J = 5.0 Hz, 1H, H4, dia 2), 7.19 (d, J = 5.0 Hz, 1H, H4, dia 1), 6.45 (s, 1H, H11, dia 1 or dia 2), 6.44 (s, 1H, H11, dia 1 or dia 2), 6.09 (d, J = 1.6 Hz, 1H, H1′, dia 1 or dia 2), 6.07 (d, J = 1.4 Hz, 1H, H1′, dia 1 or dia 2), 5.85 (s, 1H, H6, dia 1 or dia 2), 5.85 (s, 1H, H6, dia 1 or dia 2), 4.61 (d, J = 4.6 Hz, 1H, H2′, dia 1), 4.58 (d, J = 4.8 Hz, 1H, H2′, dia 2), 4.29–4.26 (m, 1H, H3′, dia 1), 4.26–4.23 (m, 1H, H3′, dia 2), 4.20–4.18 (m, 1H, H4′, dia 2), 4.18–4.16 (m, 1H, H4′, dia 1), 3.93 (dd, J = 3.7, 1.5 Hz, 1H, H5′, dia 1), 3.89 (dd, J = 3.7, 1.5 Hz, 1H, H5′, dia 2), 3.80 (d, J = 2.8 Hz, 1H, H5′, dia 2), 3.76 (d, J = 2.8 Hz, 1H, H5′, dia 1), 3.51 (s, 3H, H7 or H8, dia 1 or dia 2), 3.47 (s, 3H, H7 or H8, dia 1 or dia 2), 3.42 (s, 3H, H7 or H8, dia 1 or dia 2), 3.39 (s, 3H, H7 or H8, dia 1 or dia 2), 0.95 (s, 9H, H7′, dia 1 or dia 2), 0.94 (s, 9H, H7′, dia 1 or dia 2), 0.89 (s, 9H, H7′, dia 1 or dia 2), 0.88 (s, 9H, H7′, dia 1 or dia 2), 0.86 (s, 9H, H7′, dia 1 or dia 2), 0.85 (s, 9H, H7′, dia 1 or dia 2), 0.13 (s, 3H, H6′, dia 1 or dia 2), 0.12 (s, 3H, H6′, dia 1 or dia 2), 0.11 (s, 3H, H6′, dia 1 or dia 2), 0.11 (s, 3H, H6′, dia 1 or dia 2), 0.10 (s, 3H, H6′, dia 1 or dia 2), 0.09 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.08 (s, 3H, H6′, dia 1 or dia 2), 0.00 (s, 3H, H6′, dia 1 or dia 2), 0.00 (s, 3H, H6′, dia 1 or dia 2), −0.15 (s, 3H, H6′, dia 1 or dia 2), −0.17 (s, 3H, H6′, dia 1 or dia 2). 13C NMR (75 MHz, CDCl3) δ 155.8 (C1, dia 1 or dia 2), 155.8 (C1, dia 1 or dia 2), 149.9 (C5, dia 1 or dia 2), 149.8 (C5, dia 1 or dia 2), 144.6 (C9, dia 1 or dia 2), 144.5(C9, dia 1 or dia 2), 138.8 (C3, dia 1 or dia 2), 138.7 (C3, dia 1 or dia 2), 135.1 (C12, dia 1 or dia 2), 135.1 (C12, dia 1 or dia 2), 131.8 (C14,16 or C13,17, dia 1 or dia 2), 131.8 (C14,16 or C13,17, dia 1 or dia 2),130.5 (C14,16 or C13,17, dia 1 or dia 2), 130.5, (C14,16 or C13,17, dia 1 or dia 2), 130.3 (C2, dia 1 or dia 2), 130.2 (C2, dia 1 or dia 2), 123.0 (C4, dia 1 or dia 2), 123.0 (C4, dia 1 or dia 2), 122.5 (C10, dia 1 or dia 2), 122.5 (C10, dia 1 or dia 2), 122.0 (C15, dia 1 or dia 2), 122.0 (C15, dia 1 or dia 2), 119.8 (CN, dia 1 or dia 2), 119.8 (CN, dia 1 or dia 2), 103.2 (C6, dia 1 or dia 2), 103.2 (C6, dia 1 or dia 2), 92.9 (C1′, dia 1 or dia 2), 92.9 (C1′, dia 1 or dia 2), 86.9 (C4′, dia 1 or dia 2), 86.6 (C4′, dia 1 or dia 2), 77.5 (C2′, dia 1 or dia 2), 77.3 (C2′, dia 1 or dia 2), 72.6 (C3′, dia 1 or dia 2), 72.4 (C3′, dia 1 or dia 2), 62.9 (C5′, dia 1 or dia 2), 62.8 (C5′, dia 1 or dia 2), 56.4 (C7 or C8, dia 1 or dia 2), 56.4 (C7 or C8, dia 1 or dia 2), 56.0 (C7 or C8, dia 1 or dia 2), 56.0 (C7 or C8, dia 1 or dia 2), 41.0 (C11, dia 1 or dia 2), 41.0 (C11, dia 1 or dia 2), 26.1 (3C, C7′, dia 1 or dia 2), 26.1 (3C, C7′, dia 1 or dia 2), 25.9 (2C, C7′, dia 1 or dia 2), 25.8 (2C, C7′, dia 1 or dia 2), 18.5 (C8′, dia 1 or dia 2), 18.5 (C8′, dia 1 or dia 2), 18.2 (C8′, dia 1 or dia 2), 18.2 (C8′, dia 1 or dia 2),18.1 (C8′, dia 1 or dia 2), 18.1 (C8′, dia 1 or dia 2), −4.3 (2C, C6′, dia 1 or dia 2), −4.3 (2C, C6′, dia 1 or dia 2), −4.4 (C6′, dia 1 or dia 2), −4.4 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −4.5 (C6′, dia 1 or dia 2), −5.0 (C6′, dia 1 or dia 2), −5.0 (C6′, dia 1 or dia 2), −5.0 (C6′, dia 1 or dia 2), −5.0 (C6′, dia 1 or dia 2). IR (cm−1): 2930, 2857, 2360, 2341, 2255, 1596, 1256, 1109, 1043, 836, 735. HRMS (ESI) m/z: [M + H]+ Calcd for C41H66BrN5O6Si3H 888.3577. Found 888.3576.

3.4.8. Synthesis of 4-(1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-8-phenyl-1,6-naphthyridin-7(6H)-one hydrochloride Salt TzNat A

A 37% w/w aqueous solution of hydrochloric acid (3 equiv.) was added to a stirred solution of compound 15 (1.25 g, 1.54 mmol) in THF (0.1 M). The solution was stirred at room temperature for 24 h. The mixture was tritured in Et2O and filtered to yield the TzNat A as a hydrochloride salt. Red powder, M = 695 mg. Yield: 98%. 1H NMR (400 MHz, CH3OD) δ 10.34 (s, 1H, H6), 9.36 (s, 1H, H16), 8.77 (d, J = 5,8 Hz, 1H, H1), 7.88 (d, J = 5.7, 1H, H2), 7.70–7.45 (m, 5H, H10/11/12/13/14), 6.23 (d, J = 3.7 Hz, 1H, H1′), 4.65 (dd, J = 4.3, 4.3 Hz, 1H, H2′), 4.40 (t, J = 5.1 Hz, 1H, H3′), 4.23 (dt, J = 4.1, 4.0 Hz 1H, H4′), 3.91 (dd, J = 12.3, 3.1 Hz, 1H, H5′), 3.78 (dd, J = 12.3, 3.1 Hz, 1H, H5′). 13C NMR (101 MHz, DMSO) δ 160.9 (C7), 155.0 (C1), 147.9 (C6), 143.6 (C3, C15), 134.2 (C8,9), 131.9 (C10,14), 128.0 (C11,13) 127.4 (C12), 125.6 (C16), 117.4 (C2), 114.2 (C4,5), 93.1 (C1′), 86.6 (C4′), 75.6 (C2′), 70.7 (C3′), 61.6 (C5′). IR (cm−1): 3349 (O-H), 2963, 2924, 2360, 2341, 1631, 1589, 1263, 1101, 814. HRMS (ESI) m/z: [M + H]+ Calcd for C21H19N5O5H 422.1459. Found 422.1458.

3.4.9. Synthesis of 4-(1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-8-(4-methoxyphenyl)-1,6-naphthyridin-7(6H)-one hydrochloride salt TzNat B

A 37% w/w aqueous solution of hydrochloric acid (3 equiv.) was added to a stirred solution of compound 16 (68 mg, 0.08 mmol) in THF (0.1 M). The solution was stirred at room temperature for 24 h. The mixture was tritured in Et2O and filtered to yield the TzNat B as a hydrochloride salt. Red powder, M = 30 mg. Yield: 82%.1H NMR (400 MHz, CH3OD) δ 10.32 (s, 1H, H6), 9.36 (s, 1H, H16), 8.77 (d, J = 6.0 Hz, 1H, H1), 7.88 (d, J = 5.9 Hz, 1H, H2), 7.47–7.40 (m, 2H, H10,14 or H11,12), 7.21–7.14 (m, 2H, H10,14 or H11,12), 6.23 (d, J = 3.7 Hz, 1H, H1′), 4.65 (dd, J = 4.9, 3.7 Hz, 1H, H2′), 4.40 (t, J = 5.1 Hz, 1H, H3′), 4.23 (dt, J = 5.2, 3.5 Hz, 1H, H4′), 3.91 (s, 3H, H17), 3.90 (dd, J = 12.3, 3.9 Hz, 1H, H5′), 3.78 (dd, J = 12.3, 3.9 Hz, 1H, H5′). 13C NMR (101 MHz, DMSO) δ 160.6 (C7), 158.5 (C12,8), 154.0 (C1), 147.9 (C3), 144.1 (C6), 143.0 (C15), 132.6 (C10,14 or C11,13), 126.0 (C16), 125.1 (C9), 116.6 (C2′), 113.7 (C4,5), 113.3 (C10,14 or C11,13), 92.6 (C1′), 86.2 (C4′), 75.2 (C2′), 70.2 (C3′), 61.1 (C5′), 55.1 (C17). IR (cm−1): 3348, 2880, 2857, 2360, 2341, 1630, 1587, 1248, 1179, 1101, 1049, 824. HRMS (ESI) m/z: [M + H]+ Calcd for C22H21N5O6H 452.1565. Found 452.1563.

3.4.10. 8-(4-bromophenyl)-4-(1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-1H-1,2,3-triazol-4-yl)-1,6-naphthyridin-7(6H)-one hydrochloride Salt TzNat C

A 37% w/w aqueous solution of hydrochloric acid (3 equiv.) was added to a stirred solution of compound 17 (86 mg, 0.09 mmol) in THF (0.1 M). The solution was stirred at room temperature for 24 h. The mixture was tritured in Et2O and filtered to yield the Tz Nat C as a hydrochloride salt. Orange-red powder, M = 37 mg. Yield: 77%. 1H NMR (400 MHz, CH3OD) δ 10.37 (s, 1H, H6), 9.36 (s, 1H H16), 8.78 (d, J = 6.0 Hz, 1H, H1), 7.89 (d, J = 6.0 Hz, 1H, H2), 7.82–7.76 (m, 2H, H10,14 or H11,12), 7.47–7.41 (m, 2H, H10,14 or H11,12), 6.22 (d, J = 3.7 Hz, 1H, H1′), 4.65 (dd, J = 4.9, 3.7 Hz, 1H, H2′), 4.40 (t, J = 5.1 Hz, 1H, H3′), 4.22 (dt, J = 5.2, 3.4 Hz, 1H, H4′), 3.90 (dd, J = 12.3, 3.1 Hz, 1H, H5′), 3.78 (dd, J = 12.3, 3.9 Hz, 1H, H5′). 13C NMR (101 MHz, DMSO) δ 160.2 (C7), 154.9 (C1), 152.7 (C4), 149.6 (C5), 147.3 (C6), 143.2 (C15), 141.2 (C3), 133.7 (C10,14 or C11,13), 133.2 (C9), 130.4 (C10,14 or C11,13), 125.4 (C16), 120.2 (C12), 116.9 (C2), 113.5 (C8), 92.5 (C1′), 86.6 (C4′), 75.1 (C2′), 70.2 (C3′), 61.1 (C5′). IR (cm−1): 3304, 3085, 2980, 2888, 2360, 2341, 1641, 1588, 1261, 1101, 1073, 678. HRMS (ESI) m/z: [M + H]+ Calcd for C21H18BrN5O5H 500.0564. Found 500.0561.

4. Conclusions

We have synthetized, using a Cu alkyne-azide cycloaddition (CuAAC) reaction, three original molecules as potential fluorescent ribonucleoside analogues, incorporating 1,6-naphthyridin-7(6H)-one as the fluorescent nucleobase and a 1,2,3-triazole as a linkage to a ribofuranosyl. Optical properties of these molecules have been studied in solvents of different polarity. Importantly, these molecules are fluorescent, showing a dual emission in highly polar aprotic solvent. In addition, a remarkable change of emissivity depending on the polarity of the solvent has been observed. We posit that these optical properties are useful in developing these molecules as flexible fluorescent probes for studying binding sites of enzymes and protein–nucleic acid interaction. In addition, such analogues could be of great interest in the search for new antiviral or antitumoral drugs based on nucleosides.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules29030687/s1.

Author Contributions

Conceptualization, C.B. and V.C.; methodology, C.B. and V.C.; Formal analysis, C.B., A.B., O.R. and V.C.; investigation, C.B., V.C., A.B. and O.R.; resources, C.B. and V.C.; writing—original draft preparation, C.B.; writing—review and editing, C.B. and V.C.; project administration, C.B. and V.C.; funding acquisition, C.B. All authors have read and agreed to the published version of the manuscript.

Funding

Centre National de la Recherche Scientifique (CNRS) and Sorbonne Université.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All data generated or analyzed during this study are included in this published article and its Supplementary Information Files.

Conflicts of Interest

The authors declare no conflicts of interest.

References

  1. Tinoco, I. Nucleic Acid Structures, Energetics, and Dynamics. J. Phys. Chem. 1996, 100, 13311–13322. [Google Scholar] [CrossRef]
  2. Bottaro, S.; Di Palma, F.; Bussi, G. The role of nucleobase interactions in RNA structure and dynamics. Nucleic Acids Res. 2014, 42, 13306–13314. [Google Scholar] [CrossRef]
  3. Minchin, S.; Lodge, J. Understanding biochemistry: Structure and function of nucleic acids. Essays Biochem. 2019, 63, 433–456. [Google Scholar] [CrossRef]
  4. Chu, C.K.; Baker, D.C. Nucleosides and Nucleotides as Antitumor and Antiviral Agents; Plenum Press: New York, NY, USA, 1993. [Google Scholar]
  5. Thomson, J.M.; Lamont, I.L. Nucleoside Analogues as Antibacterial Agents. Front. Microbiol. 2019, 20, 952. [Google Scholar] [CrossRef]
  6. Jordheim, L.; Durantel, D.; Zoulim, F.; Dumontet, C. Advances in the development of nucleoside and nucleotide analogues for cancer and viral diseases. Nat. Rev. Drug. Discov. 2013, 12, 447–464. [Google Scholar] [CrossRef] [PubMed]
  7. Kimoto, M.; Cox, R.S., III; Hirao, I. Unnatural base pair systems for sensing and diagnostic applications. Expert. Rev. Mol. Diagn. 2011, 3, 321–331. [Google Scholar] [CrossRef] [PubMed]
  8. Krueger, A.T.; Kool, E.T. Redesigning the architecture of the base pair: Toward biochemical and biological function of new genetic sets. Chem. Biol. 2009, 16, 242–248. [Google Scholar] [CrossRef] [PubMed]
  9. Xu, W.; Chan, K.M.; Kool, E.T. Fluorescent nucleobases as tools for studying DNA and RNA. Nat. Chem. 2017, 11, 1043–1055. [Google Scholar] [CrossRef] [PubMed]
  10. Michel, B.Y.; Dziuba, D.; Benhida, R.; Demchenko, A.P.; Burger, A. Probing of Nucleic Acid Structures, Dynamics, and Interactions with Environment-Sensitive Fluorescent Labels. Front. Chem. 2020, 8, 112. [Google Scholar] [CrossRef] [PubMed]
  11. Burns, D.D.; Teppang, K.L.; Lee, R.W.; Lokensgard, M.E.; Purse, B.W. Fluorescence turn-on sensing of DNA duplex formation by a tricyclic cytidine analogue. J. Am. Chem. Soc. 2017, 139, 1372–1375. [Google Scholar] [CrossRef] [PubMed]
  12. Schmidt, O.P.; Mata, G.; Luedtke, N.W. Fluorescent base analogue reveals T-HgII-T base pairs have high kinetic stabilities that perturb DNA metabolism. J. Am. Chem. Soc. 2016, 138, 14733–14739. [Google Scholar] [CrossRef] [PubMed]
  13. Klöcker, N.; Weissenboeck, F.P.; Rentmeister, A. Covalent labeling of nucleic acids. Chem. Soc. Rev. 2020, 49, 8749–8773. [Google Scholar] [CrossRef] [PubMed]
  14. Dziuba, D. Environmentally sensitive fluorescent nucleoside analogues as probes for nucleic acid—protein interactions: Molecular design and biosensing applications. Methods Appl. Fluoresc. 2022, 4, 10. [Google Scholar] [CrossRef] [PubMed]
  15. Secrist, J.A., III; Barrio, J.R.; Leonard, N.J.A. Fluorescent modification of adenosine triphosphate with activity in enzyme systems:1,N 6-ethenoadenosine triphosphate. Science 1972, 175, 646–647. [Google Scholar] [CrossRef]
  16. Coleman, R.S.; Madaras, M.L. Synthesis of a novel coumarin C-riboside as a photophysical probe of oligonucleotide dynamics. J. Org. Chem. 1998, 63, 5700–5703. [Google Scholar] [CrossRef]
  17. Morales-Rojas, H.; Kool, E.T. A porphyrin C-nucleoside incorporated into DNA. Org. Lett. 2002, 4, 4377–4380. [Google Scholar] [CrossRef]
  18. Okamoto, A.; Tainaka, K.; Fujiwara, Y. Nile Red nucleoside: Design of a solvatofluorochromic nucleoside as an indicator of micropolarity around DNA. J. Org. Chem. 2006, 71, 3592–3598. [Google Scholar] [CrossRef]
  19. Gao, J.; Strassler, C.; Tahmassebi, D.; Kool, E.T. Libraries of composite polyfluors built from fluorescent deoxyribosides. J. Am. Chem. Soc. 2002, 124, 11590–11591. [Google Scholar] [CrossRef]
  20. Hirao, I.; Kimoto, M.; Yamashige, R. Natural versus artificial creation of base pairs in DNA: Origin of nucleobases from the perspectives of unnatural base pair studies. Acc. Chem. Res. 2012, 45, 2055–2065. [Google Scholar] [CrossRef]
  21. Andreeva, O.V.; Garifullin, B.F.; Zarubaev, V.V.; Slita, A.V.; Yesaulkova, I.L.; Saifina, L.F.; Shulaeva, M.M.; Belenok, M.G.; Semenov, V.E.; Kataev, V.E. Synthesis of 1,2,3-triazolyl nucleoside analogues and their antiviral activity. Mol. Divers. 2021, 25, 473–490. [Google Scholar] [CrossRef]
  22. Alvarez, R.; Velázquez, S.; San-Félix, A.; Aquaro, S.; De Clercq, E.; Perno, C.F.; Karlsson, A.; Balzarini, J.; Camarasa, M.J. 1,2,3-Triazole-[2′,5′-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]-3′-spiro-5″-(4″-amino-1″,2″-oxathiole 2″,2″-dioxide) (TSAO) analogues: Synthesis and anti-HIV-1 activity. J. Med. Chem. 1994, 37, 4185–4194. [Google Scholar] [CrossRef]
  23. Chittepu, P.; Sirivolu, V.R.; Seela, F. Nucleosides and oligonucleotides containing 1,2,3-triazole residues with nucleobase tethers: Synthesis via the azide-alkyne ‘click’ reaction. Bioorg. Med. Chem. 2008, 16, 8427–8439. [Google Scholar] [CrossRef] [PubMed]
  24. Ghoteimi, R.; Braka, A.; Rodriguez, C.; Cros-Perrial, E.; Tai Nguyen, V.; Uttaro, J.P.; Mathé, C.; Chaloin, L.; Ménétrier-Caux, C.; Jordheim, L.P.; et al. 4-Substituted-1,2,3-triazolo nucleotide analogues as CD73 inhibitors, their synthesis, in vitro screening, kinetic and in silico studies. Bioorg. Chem. 2021, 107, 104577. [Google Scholar] [CrossRef] [PubMed]
  25. St. Amant, A.H.; Bean, L.A.; Guthrie, J.P.; Hudson, R.H. Click fleximers: A modular approach to purine base-expanded ribonucleoside analogues. Org. Biomol. Chem. 2012, 10, 6521–6525. [Google Scholar] [CrossRef] [PubMed]
  26. Seley, K.L.; Zhang, L.; Hagos, A.; Quirk, S. “Fleximers”. Design and synthesis of a new class of novel shape-modified nucleosides (1). J. Org. Chem. 2002, 67, 3365–3373. [Google Scholar] [CrossRef] [PubMed]
  27. Chudinov, M.V. Nucleoside Analogs with Fleximer Nucleobase. Chem. Heterocycl. Comp. 2020, 56, 636–643. [Google Scholar] [CrossRef] [PubMed]
  28. Seley-Radtke, K. Flexibility-Not just for yoga anymore! Antivir. Chem. Chemother. 2018, 26, 2040206618756788. [Google Scholar] [CrossRef] [PubMed]
  29. Bag, S.S.; Talukdar, S.; Das, S.K.; Pradhan, M.K.; Mukherjee, S. Donor/acceptor chromophores-decorated triazolyl unnatural nucleosides: Synthesis, photophysical properties and study of interaction with BSA. Org. Biomol. Chem. 2016, 22, 5088–5108. [Google Scholar] [CrossRef]
  30. Dziuba, D.; Postupalenko, V.Y.; Spadafora, M.; Klymchenko, A.S.; Guérineau, V.; Mély, Y.; Benhida, R.; Burger, A. A universal nucleoside with strong two-band switchable fluorescence and sensitivity to the environment for investigating DNA interactions. J. Am. Chem. Soc. 2012, 134, 10209–10213. [Google Scholar] [CrossRef]
  31. Litvinov, V.P. Advances in the chemistry of naphthyridines. Adv. Heterocycl. Chem. 2006, 91, 189–300. [Google Scholar]
  32. Darakshan; Parvin, T. Domino reaction for the synthesis of pyrazole/isoxazole fused naphthyridine derivatives Involving indole ring opening and double ring formation. J. Org. Chem. 2023, 88, 6847–6856. [Google Scholar] [CrossRef]
  33. Wang, Y.; Lv, Z.; Chen, F.; Wang, X.; Gou, S. Discovery of 5-(3-chlorophenylamino)benzo[c][2,6]naphthyridine derivatives as highly selective CK2 inhibitors with potent cancer cell stemness inhibition. J. Med. Chem. 2021, 64, 5082–5098. [Google Scholar] [CrossRef]
  34. Sun, Q.; Ren, R.; Wu, P.-P.; Zhuo, L.-S.; Dong, H.; Peng, H.-T.; Cao, Y.-F.; Luo, X.-G.; She, N.-F. A 2, 7-naphthyridine-based fluorescent turn-on probe for detection of biothiols in vitro and in vivo. Dyes Pigm. 2020, 182, 108702. [Google Scholar] [CrossRef]
  35. Che, C.-M.; Wan, C.-W.; Ho, K.-Y.; Zhou, Z.-Y. Strongly luminescent metal-organic compounds: Spectroscopic properties andcrystal structure of substituted 1,8-naphthyridine and its zinc (II) complex. New. J. Chem. 2001, 25, 63–65. [Google Scholar] [CrossRef]
  36. Hikishima, S.; Minakawa, N.; Kuramoto, K.; Fujisawa, Y.; Ogawa, M.; Matsuda, A. Synthesis of 1,8-naphthyridine C-nucleosides and their base-pairing properties in oligodeoxynucleotides: Thermally stable naphthyridine:imidazopyridopyrimidine base-pairing motifs. Angew. Chem. Int. Ed. 2005, 44, 596–598. [Google Scholar] [CrossRef]
  37. Oliveras, J.M.; Puig de la Bellacasa, R.; Estrada-Tejedor, R.; Teixidó, J.; Borrell, J.I. 1,6-Naphthyridin-2(1H)-ones: Synthesis and Biomedical Applications. Pharmaceuticals 2021, 14, 1029. [Google Scholar] [CrossRef] [PubMed]
  38. Eldrup, A.B.; Christensen, C.; Haaima, G.; Nielsen, P.E. Substituted 1,8-Naphthyridin-2(1H)-ones are Superior to thymine in the recognition of adenine in duplex as well as triplex structures. J. Am. Chem. Soc. 2002, 124, 3254–3262. [Google Scholar] [CrossRef] [PubMed]
  39. Lawson, C.; Füchtbauer, A.; Wranne, M.; Giraud, T.; Floyd, T.; Dumat, B.; Andersen, N.; El-Sagheer, A.; Brown, T.; Gradén, H.; et al. Synthesis, oligonucleotide incorporation and fluorescence properties in DNA of a bicyclic thymine analogue. Sci. Rep. 2018, 8, 13970. [Google Scholar] [CrossRef] [PubMed]
  40. Samaan, G.N.; Wyllie, M.K.; Cizmic, J.M.; Needham, L.M.; Nobis, D.; Ngo, K.; Andersen, S.; Magennis, S.W.; Lee, S.F.; Purse, B.W. Single-molecule fluorescence detection of a tricyclic nucleoside analogue. Chem. Sci. 2020, 12, 2623–2628. [Google Scholar] [CrossRef] [PubMed]
  41. Beghennou, A.; Gontard, G.; Dossmann, H.; Passador, K.; Thorimbert, S.; Corcé, V.; Botuha, C. 1,6-Naphthyridin-7(6H)-ones: Synthesis and optical properties. Org. Biomol. Chem. 2023, 21, 2976–2982. [Google Scholar] [CrossRef] [PubMed]
  42. Fantoni, N.Z.; El-Sagheer, A.H.; Brown, T.A. Hitchhiker’s guide to click-chemistry with nucleic acids. Chem. Rev. 2021, 121, 7122–7154. [Google Scholar] [CrossRef]
  43. Agrahari, A.K.; Bose, P.; Jaiswal, M.K.; Rajkhowa, S.; Singh, A.S.; Hotha, S.; Mishra, N.; Tiwari, V.K. Cu(I)-Catalyzed Click Chemistry in Glycoscience and Their Diverse Applications. Chem. Rev. 2021, 121, 7638–7956. [Google Scholar] [CrossRef]
  44. Amblard, F.; Sari, O.; Boucle, S.; Khalil, A.; Schinazi, R.F. Modifications of Nucleosides, Nucleotides, and Nucleic Acids using Huisgen’s [3+2] Azide–Alkyne Cycloaddition: Opening Pandora’s Box. In Click Reactions in Organic Synthesis; Chandrasekaran, S., Ed.; Wiley: Hoboken, NJ, USA, 2016. [Google Scholar]
  45. Ermolat’ev, D.; Mehta, V.; Van der Eycken, E. Synthesis of Furo[2,3-b]pyrazine Nucleoside Analogues with 1,2,3-Triazole Linkage. QSAR Comb. Sci. 2007, 26, 1266–1273. [Google Scholar] [CrossRef]
  46. Passays, J.; Rubay, C.; Marcélis, L.; Elias, B. Synthesis and Photophysical Properties of Triazolyl IrIII Nucleosides. Eur. J. Inorg. Chem. 2017, 3, 623–629. [Google Scholar] [CrossRef]
  47. Pandey, N.; Dwivedi, P.; Jyoti, S.M.; Kumar, D.; Tiwari, V.K.; Mishra, B.B. Click Chemistry Inspired Synthesis of Hydroxyanthracene Triazolyl Glycoconjugates. ACS Omega 2022, 7, 37112–37121. [Google Scholar] [CrossRef]
  48. Singh, S.K.; Kumar, S.; Yadav, M.S.; Tiwari, V.K. Pyridyl Glycosyl Triazole/CuI-Mediated Domino/Tandem Synthesis of Quinazolinones. J. Org. Chem. 2022, 87, 15389–15402. [Google Scholar] [CrossRef] [PubMed]
  49. Štimac, A.; Jože, K. An improved preparation of 2,3,5-tri-O-acyl-β-d-ribofuranosyl azides by the Lewis acid-catalysed reaction of β-D-ribofuranosyl acetates and trimethylsilyl azide: An example of concomitant formation of the α anomer by trimethylsilyl triflate catalysis. Carbohydr. Res. 1992, 232, 359–365. [Google Scholar] [CrossRef]
  50. Luche, J.-L.; Gemal, A.L. Efficient synthesis of acetals catalyzed by rare earth chlorides. J. Chem. Soc. Chem. Commun. 1978, 22, 976–977. [Google Scholar] [CrossRef]
  51. Brunel, D.; Dumur, F. Recent advances in organic dyes and fluorophores comprising a 1,2,3-triazole moiety. New J. Chem. 2020, 44, 3546–3561. [Google Scholar] [CrossRef]
  52. Liese, D.; Haberhauer, G. Rotations in Excited ICT States—Fluorescence and its Microenvironmental Sensitivity. Isr. J. Chem. 2018, 58, 813–826. [Google Scholar] [CrossRef]
  53. Nisic, F.; Speciale, G.; Bernardi, A. Stereoselective synthesis of α- and β-glycofuranosyl amides by traceless ligation of glyco. furanosyl azides. Chem. Eur. J. 2012, 18, 6895–6906. [Google Scholar] [CrossRef] [PubMed]
Scheme 1. Our reported 8-substituted 1,6-naphthyridin-7(6H)-ones 1 for Ar = Ph and their emission spectra in various solvents, adapted with permission from Ref. [41]. 2023, Royal Chemical Society (RCS).
Scheme 1. Our reported 8-substituted 1,6-naphthyridin-7(6H)-ones 1 for Ar = Ph and their emission spectra in various solvents, adapted with permission from Ref. [41]. 2023, Royal Chemical Society (RCS).
Molecules 29 00687 sch001
Scheme 2. Retrosynthetic approach for the synthesis of 1,2,3-triazolyl naphtyridinone–ribose conjugate 4.
Scheme 2. Retrosynthetic approach for the synthesis of 1,2,3-triazolyl naphtyridinone–ribose conjugate 4.
Molecules 29 00687 sch002
Scheme 3. Attempts to use click reaction to prepare triazole conjugate 4 from acetylated ribosyl azide 2.
Scheme 3. Attempts to use click reaction to prepare triazole conjugate 4 from acetylated ribosyl azide 2.
Molecules 29 00687 sch003
Scheme 4. Retrosynthetic analysis of the synthesis of triazole conjugate TzNat A.
Scheme 4. Retrosynthetic analysis of the synthesis of triazole conjugate TzNat A.
Molecules 29 00687 sch004
Scheme 5. First attempt for the synthesis of TzNat A.
Scheme 5. First attempt for the synthesis of TzNat A.
Molecules 29 00687 sch005
Scheme 6. Successful strategy to prepare TzNat A, B, and C.
Scheme 6. Successful strategy to prepare TzNat A, B, and C.
Molecules 29 00687 sch006
Figure 2. Normalized UV–Vis absorption spectra of TzNat AC (at 10−5 M) in different solvents: (A) TzNat A, (B) TzNat B, (C) TzNat C.
Figure 2. Normalized UV–Vis absorption spectra of TzNat AC (at 10−5 M) in different solvents: (A) TzNat A, (B) TzNat B, (C) TzNat C.
Molecules 29 00687 g002
Figure 3. Fluorescence spectra of TzNat AC (at C = 10−5 μM) in different solvents: (A) TzNat A, (B) TzNat B, (C) TzNat C. The sharp peaks around 615 nm are the 2nd harmonic of the excitation wavelength.
Figure 3. Fluorescence spectra of TzNat AC (at C = 10−5 μM) in different solvents: (A) TzNat A, (B) TzNat B, (C) TzNat C. The sharp peaks around 615 nm are the 2nd harmonic of the excitation wavelength.
Molecules 29 00687 g003
Figure 4. Normalized Fluorescence spectra of TzNat A and C (at 10−5 M) in polar solvents: (A) TzNat A, (B) TzNat C.
Figure 4. Normalized Fluorescence spectra of TzNat A and C (at 10−5 M) in polar solvents: (A) TzNat A, (B) TzNat C.
Molecules 29 00687 g004
Table 1. UV–Vis Absorption and Fluorescence Emission Properties of Compounds TzNat AC in various solvents.
Table 1. UV–Vis Absorption and Fluorescence Emission Properties of Compounds TzNat AC in various solvents.
UV–Vis [b]Fluorescence [c]
CompdSolvent [a]λabs (ε)λem Stokes [d] Shifts in cm−1ΦF [e]
TzNat ACHCl3
CH2Cl2
THF
acetone
CH3CN
DMF
DMSO
EtOH
H2O
PBS
358 (8.8), 479 (5.8)
356 (10.3), 476 (4.7)
369 (6.4), 479 (0.6)
363 (5.3), 474 (0.5)
360 (5.1), 465 (1.9)
369 (5.2), 480 (1.1)
374 (3.6), 483 (1.1)
374 (3.8), 451(3.8)
427 (4.9)
427 (6.6)
471
474
461
460
458
413, 478, 560
421, 475, 560
477
563
558
6701
6992
5809
5943
6179
6179
5685
5773
5657
5498
<0.01
<0.01
0.32
0.20
0.11
0.01
<0.01
<0.01
<0.01
<0.01
TzNat BCHCl3
CH2Cl2
THF
acetone
CH3CN
DMF
DMSO
EtOH
H2O
PBS
317 (17.2), 461 (6.7)
325 (16.3), 498 (4.9)
378 (7.6), 490 (0.4)
369 (8.1), 488 (1.6)
369 (7.6), 468 (3.1)
379 (9.5), 486 (2.2)
380 (7.1), 490 (1.9)
386 (3.2), 457 (4.0)
433 (8.1)
431 (7.3)
492
499
489
492
494
499
502
--
--
--
11,220
10,729
6500
6775
6867
6345
6395
--
--
--
<0.01
<0.01
0.34
0.22
0.18
0.14
0.12
--
--
--
TzNat CCHCl3
CH2Cl2
THF
acetone
CH3CN
DMF
DMSO
EtOH
H2O
PBS
356 (12.5), 461 (6.4)
356 (9.8), 454 (6.1)
369 (8.6), 479 (1.1)
363 (8.4), 470 (1.7)
363 (5.4), 470 (2.1)
372 (9.2), 470 (1.7)
371 (9.2), 472 (2.7)
378 (4.6), 452 (5.5)
427 (7.5)
429 (7.1)
470
467
460
459
458
476, 556
477, 558
479
561
561
6813
6676
5361
5761
5714
5873
5989
5578
5593
5484
<0.01
<0.01
0.31
0.25
0.11
<0.01
<0.01
<0.01
<0.01
<0.01
[a]. All TzNat have been pre-solubilized in DMSO at 10−3 M and used it as stock solution to prepare 10−5 M diluted solutions in solvents. [b]. Absorption maxima measured in solution (10−5 M) at room temperature in nm (extinction coefficient at absorption maxima in 103 M−1 cm−1). [c]. Fluorescence wavelengths measured at room temperature at a concentration of 10−5 M after excitation at the maximum absorption wavelength. [d]. Stokes shift in cm−1 defined as the wavelength difference between the absorption and emission peak maxima. [e]. Absolute fluorescence quantum yields were measured.
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Beghennou, A.; Rondot, O.; Corcé, V.; Botuha, C. 1H-1,2,3-triazolyl-1,6-naphthyridin-7(6H)-ones as Potential Fluorescent Nucleoside Analogues: Synthesis and Optical Properties. Molecules 2024, 29, 687. https://doi.org/10.3390/molecules29030687

AMA Style

Beghennou A, Rondot O, Corcé V, Botuha C. 1H-1,2,3-triazolyl-1,6-naphthyridin-7(6H)-ones as Potential Fluorescent Nucleoside Analogues: Synthesis and Optical Properties. Molecules. 2024; 29(3):687. https://doi.org/10.3390/molecules29030687

Chicago/Turabian Style

Beghennou, Anissa, Océane Rondot, Vincent Corcé, and Candice Botuha. 2024. "1H-1,2,3-triazolyl-1,6-naphthyridin-7(6H)-ones as Potential Fluorescent Nucleoside Analogues: Synthesis and Optical Properties" Molecules 29, no. 3: 687. https://doi.org/10.3390/molecules29030687

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