Genome-Wide Identification and in Silico Analysis of Poplar Peptide Deformylases
Abstract
:1. Introduction
2. Results and Discussion
2.1. Identification and Characterization of PDF Genes in Populus
2.2. Revision of Poplar PDF Gene-encoding Proteins
2.3. Divergence in Poplar PDF1s
2.4. Chromosome Location and Duplication of PDF1 Genes in Populus
2.5. In Silico Simulation on the Poplar PDFs Reveal Analogous Activities with Their Individual Counterparts in Arabidopsis
3. Experimental Section
3.1. Identification of PDF Genes across Poplar Genome
3.2. Revision of Poplar PDF Proteins
3.3. Phylogenetic Analysis and Gene Structural Display
3.4. Chromosomal Location and in Silico Simulation
4. Conclusions
Acknowledgments
References
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JGI NO. | Novel simplified nomenclature | Refseq protein ID | Refseq RNA ID (CDS) | Chromosome Location |
---|---|---|---|---|
640630 | PtrPDF1A | XP_002298107.1 | XM_002298071.1 | LG_I: 9208431–9211542 (+) |
173925 | PtrPDF1B | XP_002300047.1 | XM_002300011.1 | LG_I: 21839768–21844235 (−) |
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Liu, C.-C.; Liu, B.-G.; Yang, Z.-W.; Li, C.-M.; Wang, B.-C.; Yang, C.-P. Genome-Wide Identification and in Silico Analysis of Poplar Peptide Deformylases. Int. J. Mol. Sci. 2012, 13, 5112-5124. https://doi.org/10.3390/ijms13045112
Liu C-C, Liu B-G, Yang Z-W, Li C-M, Wang B-C, Yang C-P. Genome-Wide Identification and in Silico Analysis of Poplar Peptide Deformylases. International Journal of Molecular Sciences. 2012; 13(4):5112-5124. https://doi.org/10.3390/ijms13045112
Chicago/Turabian StyleLiu, Chang-Cai, Bao-Guang Liu, Zhi-Wei Yang, Chun-Ming Li, Bai-Chen Wang, and Chuan-Ping Yang. 2012. "Genome-Wide Identification and in Silico Analysis of Poplar Peptide Deformylases" International Journal of Molecular Sciences 13, no. 4: 5112-5124. https://doi.org/10.3390/ijms13045112