Plant RNA Binding Proteins as Critical Modulators in Drought, High Salinity, Heat, and Cold Stress Responses: An Updated Overview
Abstract
:1. Introduction
2. Regulation of RBPs
RBPs | Study | Total Genes | Species | Drought | Modulation | Ref. | |
---|---|---|---|---|---|---|---|
Upregulated | Downregulated | ||||||
YTH | - | 39 | T. aestivum L | - | responsive | [39] | |
- | 10 | C. sinensis | - | CitYTH2, 3, 5, 7, 8 | CitYTH1, CitYTH4 | [40] | |
MhYTP1 | 26 | M. domestica | T | - | - | [41] | |
- | 26 | M. domestica | - | responsive | [42] | ||
- | 13 | A. thaliana | - | - | AtYTH10 | [18] | |
- | 12 | O. sativa | - | OsYTH01, 2, 3,5,12 | OsYTH10, 11 | [18] | |
SR | - | 18 | M. esculenta Crantz | - | MeRS40 | MeSR20, Z21a, 34a, RSZ22a, SC35 | [43] |
- | 18 | B. distachyon | - | responsive | [44] | ||
SR45a | B. rapa | T | SR45a | - | [45] | ||
GR-RBP | GRP7 | 8 | A. thaliana | S | - | - | [46] |
- | 37-Ga 32-Gr | G. arboretum G. raimondii | - | GaRB-GRP4, 9,17 | - | [47] | |
OsGRP3 | - | O. sativa | T | OsGRP3 | - | [48] | |
BrRZ1, 2, 3 | - | B. rapa | S | BrRZ1, BrRZ2, BrRZ3 | - | [21] | |
TaRZ2 or 3 | - | T. aestivum | S | - | - | [49] | |
CSDP1 | - | A. thaliana | S | - | - | [50] | |
CspA | - | E. coli/ A. thaliana | T | - | - | [51] | |
PPR | SOAR1 | - | A. thaliana | T | - | - | [52] |
- | 491 | O. sativa | - | LOC_Os02g46980, LOC_Os04g01990, LOC_Os03g53170 | - | [53] | |
GmPPR4 | 179 DYW | G. max | T | GmPPR4 | - | [54] | |
POCO1 | - | A. thaliana | S (M) | - | - | [55] | |
DEAD-RH | SlDEAD31 | - | S. lycopersicum | T | SlDEAD31 | - | [56] |
OsRH58 | - | O. sativa | T | OsRH58 | - | [32] | |
OsABP | O. sativa | - | OsABP | [57] | |||
ARP1 | - | A. thaliana | S | - | - | [28] | |
PUF | APUM5 | A. thaliana | S | [58] | |||
hnRNP-like | - | E. guineensis | - | EgRBP42 | - | [25] |
RBP (Domain) | Study | Total Genes | Species | Salinity | Modulation | Ref. | |
---|---|---|---|---|---|---|---|
UP | Down | ||||||
YTH | - | 39 | T. aestivum L | - | responsive | [39] | |
- | 10 | C. sinensis | - | CitYTH4 | CitYTH2 | [40] | |
- | 5 | C. sativus | - | - | CsYTH1, 2, 3, 4, 5 | [38] | |
- | 26 | M. domestica | - | responsive | [42] | ||
- | 13 | A. thaliana | - | - | AtYTH10 | [18] | |
SR | SR45a | A. thaliana | S | SR45a-1a, SR45a-1b | - | [34] | |
SR45.1 | A. thaliana | T | [59] | ||||
MeSR34 | 18 | M. esculenta Crantz | T | MeRS40, MeRS31, MeRS2Z33 | MeRSZ21a, MeSCL28, MeRS2Z33, MeSR34a, MeRSZ22a, MeSC35 | [43] | |
- | 18 | B. distachyon | - | responsive | [44] | ||
- | 28 | B. rapa | - | BrSR3, BrSCL2, BrSR-like 3 | - | [20] | |
GR-RBP | NtRGP-1a, 1b, 2, 3 | N. tabacum | - | - | NtRGP-1a, 1b, 2, 3 | [60] | |
AtGRDP2 | A. thaliana | T | - | - | [61] | ||
GRP7 | 8 | A. thaliana | S | - | - | [46] | |
- | 37-Ga 32-Gr | G. arboreum G. raimondii | - | GaRB-GRP4, 17, 9, GrRB-GRP31,9 | GrRB-GRP27,14 | [47] | |
AtZFP1 | - | A. thaliana | T | AtZFP1 (At2g25900) | [62] | ||
BrRZ1,2,3 | - | B. rapa | S | BrRZ1, BrRZ2, BrRZ3 | [21] | ||
TaRZ1, 2,3 | - | T. aestivum | S | - | [49] | ||
SRP1 | - | A. thaliana | S | - | [24] | ||
CSDP1 | - | A. thaliana | S | - | [50] | ||
CSDP2 | - | A. thaliana | T | - | [50] | ||
CspA | - | E. coli/A. thaliana | T | - | [51] | ||
PPR | wsl | 477 | O. sativa | S (M) | responsive | [63] | |
PGN | - | A. thaliana | S (M) | - | - | [64] | |
SOAR1 | - | A. thaliana | T | - | - | [52] | |
PPR40 | A. thaliana | T | [65] | ||||
- | 491 | O. sativa | LOC_Os05g47510, LOC_Os11g37330, LOC_Os03g53170 | - | [53] | ||
PPR96 | 105-E-type | A. thaliana | S (M) | - | - | [66] | |
- | 626 | poplar | PtrPPR5, 41,121, 185, 277, 481, 574 | PtrPPR8, 30, 119 | [67] | ||
- | 179 DYW-PPR | Glycine max | - | GmPPR4 | - | [54] | |
DEAD-RH | AtRH17 | - | A. thaliana | T | - | AtRH9, AtRH25 | [68] |
AtRH9, 25 | - | A. thaliana | S | - | - | [69] | |
OsRH58 | - | A. thaliana | T | OsRH58 | - | [19] | |
SlDEAD31 | - | S. lycopersicum | T | SlDEAD30, 31 | - | [56] | |
STRS1, STRS2 | - | A. thaliana | S | - | - | [70] | |
OsSUV3 | O. sativa | T | [71] | ||||
OsABP | O. sativa | - | OsABP | [57] | |||
KH | hos5-1 | A. thaliana | S (M) | - | - | ||
PUF | APUM5 | A. thaliana | S | [58] | |||
SAHY9/APUM23 | A. thaliana | S | [72] | ||||
SDP | At1g12800 | - | A. thaliana | S (M) | - | - | [73] |
OsRBD1 | - | O. sativa | T | - | - | [74] | |
Ds-RBPs | FRY2/CPL1 | - | A. thaliana | S (M) | - | - | [75] |
DRB2,3 | - | A. thaliana | T | - | - | [76] | |
CRM | CFM4) | - | A. thaliana | S (M) | - | - | [77] |
- | 14 | O. sativa | - | Os04g0464800, Os11g0592400, Os08g036010, Os05g0551900, Os09g0363100, Os06g0304500, Os01g0958400, Os04g0492900, Os05g0145500, Os08g0188000, Os08g0174900, Os01g0323300, Os01g0495900, Os10g0512500 | [78] | ||
hnRNP | - | - | E. guineensis | - | EgRBP42 | - | [25] |
At3g54770 | - | thaliana | S | - | - | [28] | |
Tudor-SN | - | S (M) | - | - | [79] |
RBP Domain | Study | Total Genes | Species | Heat | Modulation | Ref. | |
---|---|---|---|---|---|---|---|
Upregulated | Downregulated | ||||||
YTH | - | 39 | T. aestivum L | - | responsive | [39] | |
- | 10 | C. sinensis | - | CitYTH2, 4, 5, 9 | CitYTH3, 6, 7, 10 | [40] | |
- | 26 | M. domestica | - | responsive | [42] | ||
- | 13 | A. thaliana | - | AtYTH07, 10 | AtYTH08 | [18] | |
- | 12 | O. sativa | - | OsYTH08 | OsYTH11, 12 | [18] | |
SR | - | 19 | S. lycopersicum | - | RSZ and RS2Z subfamilies, Sl-RS28, 29, 42, 46a | Sl-RS41 | [36] |
- | 18 | B. distachyon | - | responsive | [44] | ||
- | 28 | B. rapa | - | BrSR3, BrRS2Z2, BrRSZ1, BrSCL2,3, 4, BrSR-like 3 | BrRS2Z1, BrSCL5, BrRS1,2 | [20] | |
PUF | APUM9 | - | A. thaliana | T | - | - | [80] |
GR-RBP | NtRGP-1a, 1b, 2,3 | - | N. tabacum | - | NtRGP-1a,1b,2,3 | - | [60] |
DEAD-RH | OsRH58 | - | A. thaliana | - | OsRH58 | - | [19] |
SlDEAD31 | - | S. lycopersicum | - | SlDEAD31 | - | [56] | |
STRS1, 2 | - | A. thaliana | S | - | - | [39] | |
SDP | At1g12800 | - | A. thaliana | S | - | - | [73] |
KH | RCF3 | - | A. thaliana | T (M) | - | - | [81] |
esr1-1, esr1-2 | - | A. thaliana | T (M) | - | - | [13] | |
hnRNP | - | E. guineensis | - | EgRBP42 | - | [25] | |
FCA | - | A. thaliana | T | - | - | [82] |
RBPs Class | Study | Total Genes | Species | Cold | Modulation | Ref. | |
---|---|---|---|---|---|---|---|
Upregulated | Downregulated | ||||||
YTH | - | 39 | T. aestivum L | - | responsive | [39] | |
- | 10 | C. sinensis | - | CitYTH1, 2, 3, 4, 5, 6, 7, 8, 9, 10 | - | [40] | |
- | 5 | C. sativus | - | CsYTH1, 2, 4 | - | [38] | |
- | 26 | M. domestica | - | MdYTP1, 2, 5, 11, 14 | MdYTP3, 4, 8, 15 | [42] | |
- | 13 | A. thaliana | - | AtYTH05 | AtYTH10 | [18] | |
- | 12 | O. sativa | - | OsYTH08 | OsYTH10, 5, 6, 7, 9 | [18] | |
SR | - | 18 | B. distachyon | - | responsive | [44] | |
- | 28 | B. rapa | - | BrRSZ3, BrSR1,2,4, BrRS2Z2-5, BrRSZ1, BrSCL4,5, BrSR-like 2 | BrSR3, BrSCL2, BrSR-like 3 | [20] | |
GR-RBP | NtRGP-1a, 1b,2, 3 | - | N. tabacum | - | NtRGP-1a, NtRGP-1b, NtRGP-2, NtRGP-3 | - | [60] |
HvGRRBP1 | - | H. vulgare L. | T | HvGRRBP1 | - | [31] | |
OsGRP1, 4, 6 | - | Oryza sativa | T | - | - | [83] | |
atRZ-1a | - | A. thaliana | T | - | - | [84] | |
OsRZ2 | - | Oryza sativa | T | - | - | ||
BrRZ1, Z2, Z3 | - | B. rapa | S | BrRZ1, BrRZ2, BrRZ3 | - | [21] | |
atRZ-1a | - | A. thaliana | T | - | - | [84] | |
TaRZ1 | - | T. aestivum | S | - | - | [49] | |
CP31A, CP29A | - | Arabidopsis | T | - | - | [23] | |
OsCSP1, 2 | - | O. sativa | T | OsCSP1, OsCSP2 | - | [85] | |
CSDP1 | - | A. thaliana | T | - | - | [9] | |
AtCSP2 | - | A. thaliana | S | - | - | [86] | |
AtCSP3 | - | A. thaliana | - | AtCSP3 | - | [87] | |
PPR | SOAR1 | - | A. thaliana | T | - | - | [52] |
DEAD-RH | RH50 | - | A. thaliana | S (M) | - | - | [88] |
AtRH9, AtRH25 | - | A. thaliana | - | AtRH9, AtRH25 | - | [68] | |
AtRH7/PRH75 | - | A. thaliana | T | AtRH7/PRH75 | - | [89] | |
TCD33 | - | O. sativa | S (M) | - | - | [90] | |
KH | sh1 | A. thaliana | S (M) | - | - | [91] | |
CRM | CFM4 | - | A. thaliana | S (M) | - | - | [77] |
3. Plant RBP Signatures/Domain Characteristics and Their Role in Abiotic Stress Responses
3.1. Glycine-Rich RBPs
3.1.1. Zinc Finger Containing Glycine-Rich RBPs/Zinc Finger RBPs
3.1.2. Cold Shock Domain Protein (CSDP)
3.2. Serine/Arginine-Rich (SR) Domain
3.3. PPR Proteins
3.4. YTH Domain
3.5. Pumilio/Fem-3 Binding Factors (PUF) RBPs
3.6. DEAD-Box RNA Helicases
3.7. KH Domain
3.8. S1 Domain Containing-Protein (SDP)
3.9. The Chloroplast RNA Splicing and Ribosome Maturation (CRM) Domain-Containing Proteins
3.10. Double-Stranded RNA-Binding Protein (DRBP)
4. Conclusions and Future Directions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Muthusamy, M.; Kim, J.-H.; Kim, J.A.; Lee, S.-I. Plant RNA Binding Proteins as Critical Modulators in Drought, High Salinity, Heat, and Cold Stress Responses: An Updated Overview. Int. J. Mol. Sci. 2021, 22, 6731. https://doi.org/10.3390/ijms22136731
Muthusamy M, Kim J-H, Kim JA, Lee S-I. Plant RNA Binding Proteins as Critical Modulators in Drought, High Salinity, Heat, and Cold Stress Responses: An Updated Overview. International Journal of Molecular Sciences. 2021; 22(13):6731. https://doi.org/10.3390/ijms22136731
Chicago/Turabian StyleMuthusamy, Muthusamy, Jong-Hee Kim, Jin A Kim, and Soo-In Lee. 2021. "Plant RNA Binding Proteins as Critical Modulators in Drought, High Salinity, Heat, and Cold Stress Responses: An Updated Overview" International Journal of Molecular Sciences 22, no. 13: 6731. https://doi.org/10.3390/ijms22136731