Genotypic Homogeneity in Distinctive Transforming Growth Factor-Beta Induced (TGFBI) Protein Phenotypes
Abstract
:1. Introduction
2. Patients and Methods
2.1. Patients and Blood Sample Collection
2.2. PCR Amplification Reaction and Sequencing
3. Results
Distribution of Genotypes and Phenotypes
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Exon | Forward Primer | Reverse Primer | Product Size (bp) |
---|---|---|---|
1 | CGGAGGCGCTCTCACTTCC | CGAGCCCCGACTACCTGACC | 265 |
2 | GGGAGTCATTAAAGTGGGGTGGA | AGCTTGGTCTCCTGGCTGGTTAC | 99 |
3 | CAACTTAGTGGAGAGGGGCCAGA | CTCTCTCCCACCATTCCCTTCC | 206 |
4 | GCCATCCCTCCTTCTGTCTTCTG | CCGGGCAGACGGAGGTCATC | 217 |
5 | ACTGACACCCTGTCCTTCCTCCT | AGCCCACACATGGAACAGAAATG | 261 |
6 | CTGCTCATCCTTGCTGCTTCTCT | AGAGTTCCTGCTAGGCCCCTCTT | 249 |
7 | TCTGTGGGGAGTGCCAGAGTC | CAAATGAGGCAGCAGCAGGA | 234 |
8 | TGGACCCTGACTTGACCTGAGTC | AAAGGATGGCAGAAGAGATGGTG | 311 |
9 | CCCTGGGGTGGATGAATGATAAA | GCCTCCAGGGACAATCTAACAGG | 251 |
10 | ATTGCAGGAGCACATCTCTCTGG | GCTTCCCAGGAGCATGATTTAGG | 230 |
11 | GCCCCTCGTGGAAGTATAACCAG | ATCCCACTCCAGCATGACCACT | 248 |
12 | TGACAGGTGACATTTTCTGTGTGTG | GGGCCCTGAGGGATCACTACTTT | 224 |
13 | TGACCAGGCTAATTACCATTCTTGG | CAGCCTTTGATTTGCAGGACACT | 210 |
14 | TGCTCTACTTTCAACCACTACTCTG | CCAACTGCCACATGAAGAAAAGG | 198 |
15 | TCACTCTGGTCAAACCTGCCTTT | CCTCTATGGCCCAAACAGAGGAC | 183 |
16 | GCCATTGTCATAAGCAGTTGCAG | ATACAGCAGATGGCAGGCTTGG | 176 |
17 | TGGGGAGATCTGCACCTATTTGA | GGTCAGCACACTGTACCATGCAC | 710 |
Phenotype | Associated TGFBI Mutations (Genotypes) |
---|---|
Granular corneal dystrophy (GCD), type 1 (n = 11) | R124H (n = 3) |
R555W (n = 8) | |
Granular corneal dystrophy (GCD), type 2 (n = 6) | R124H (n = 5) |
R124C (n = 1) | |
Lattice corneal dystrophy (LCD) (n = 13) | R124C (n = 7) |
H626R (n = 2) | |
L550P (n = 2) | |
A620D (n = 1) | |
H572R (n = 1) | |
Reis-Buckler dystrophy (RBCD) (n = 2) | R124L (n = 1) |
R555Q (n = 1) |
Ethnicity | Phenotype | Associated TGFBI Mutations |
---|---|---|
Chinese (n = 16) | GCD1 (n = 5) | R124H (n = 3) |
R555W (n = 2) | ||
GCD2 (n = 5) | R124H (n = 4) | |
R124C (n = 1) | ||
LCD (n = 4) | R124C (n = 1) | |
A620D (n = 1) | ||
H626R (n = 2) | ||
RBCD (n = 2) | R124L (n = 1) | |
R555Q (n = 1) | ||
Malay (n = 6) | LCD (n = 6) | R124C (n = 6) |
Indian (n = 5) | GCD1 (n = 5) | R555W (n = 5) |
Others (n = 5) | GCD1 (n = 1) | R555W (n = 1) |
GCD2 (n =1) | R124H (n = 1) | |
LCD (n = 3) | L550P (n = 2) | |
H572R (n = 1) |
Locus | TGFBI Mutations | Phenotype |
---|---|---|
R124 (n = 17) | R124H (n = 8) | GCD1 (n = 3) |
GCD 2 (n = 5) | ||
R124C (n = 8) | GCD2 (n = 1) | |
LCD (n = 7) | ||
R124L (n = 1) | RBCD (n = 1) | |
R555 (n = 9) | R555W (n = 8) | GCD1 (n = 8) |
R555Q (n = 1) | RBCD (n = 1) | |
Others (n = 6) | H626R (n = 2) | LCD |
A620D (n = 1) | LCD | |
L550P (n = 2) | LCD | |
H572R (n = 1) | LCD |
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Han, S.B.; Anandalakshmi, V.; Wong, C.W.; Ng, S.R.; Mehta, J.S. Genotypic Homogeneity in Distinctive Transforming Growth Factor-Beta Induced (TGFBI) Protein Phenotypes. Int. J. Mol. Sci. 2021, 22, 1230. https://doi.org/10.3390/ijms22031230
Han SB, Anandalakshmi V, Wong CW, Ng SR, Mehta JS. Genotypic Homogeneity in Distinctive Transforming Growth Factor-Beta Induced (TGFBI) Protein Phenotypes. International Journal of Molecular Sciences. 2021; 22(3):1230. https://doi.org/10.3390/ijms22031230
Chicago/Turabian StyleHan, Sang Beom, Venkatraman Anandalakshmi, Chee Wai Wong, Si Rui Ng, and Jodhbir S. Mehta. 2021. "Genotypic Homogeneity in Distinctive Transforming Growth Factor-Beta Induced (TGFBI) Protein Phenotypes" International Journal of Molecular Sciences 22, no. 3: 1230. https://doi.org/10.3390/ijms22031230
APA StyleHan, S. B., Anandalakshmi, V., Wong, C. W., Ng, S. R., & Mehta, J. S. (2021). Genotypic Homogeneity in Distinctive Transforming Growth Factor-Beta Induced (TGFBI) Protein Phenotypes. International Journal of Molecular Sciences, 22(3), 1230. https://doi.org/10.3390/ijms22031230