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Article

BnERF114.A1, a Rapeseed Gene Encoding APETALA2/ETHYLENE RESPONSE FACTOR, Regulates Plant Architecture through Auxin Accumulation in the Apex in Arabidopsis

1
State Key Laboratory of Stress Biology for Arid Areas, Northwest A&F University, Xianyang 712100, China
2
Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China
*
Authors to whom correspondence should be addressed.
These authors contributed equally to this work.
Int. J. Mol. Sci. 2022, 23(4), 2210; https://doi.org/10.3390/ijms23042210
Submission received: 15 January 2022 / Revised: 13 February 2022 / Accepted: 15 February 2022 / Published: 17 February 2022
(This article belongs to the Special Issue Yield Traits and Their Genetic Pathway in Crop)

Abstract

:
Plant architecture is crucial for rapeseed breeding. Here, we demonstrate the involvement of BnERF114.A1, a transcription factor for ETHYLENE RESPONSE FACTOR (ERF), in the regulation of plant architecture in Brassica napus. BnERF114.A1 is a member of the ERF family group X-a, encoding a putative 252-amino acid (aa) protein, which harbours the AP2/ERF domain and the conserved CMX-1 motif. BnERF114.A1 is localised to the nucleus and presents transcriptional activity, with the functional region located at 142–252 aa of the C-terminus. GUS staining revealed high BnERF114.A1 expression in leaf primordia, shoot apical meristem, leaf marginal meristem, and reproductive organs. Ectopic BnERF114.A1 expression in Arabidopsis reduced plant height, increased branch and silique number per plant, and improved seed yield per plant. Furthermore, in Arabidopsis, BnERF114.A1 overexpression inhibited indole-3-acetic acid (IAA) efflux, thus promoting auxin accumulation in the apex and arresting apical dominance. Therefore, BnERF114.A1 probably plays an important role in auxin-dependent plant architecture regulation.

1. Introduction

Since the “Green Revolution” of wheat and rice in the 1960s, which substantially increased crop yield, much attention has been paid to the improvement of plant architecture for enhancing the seed yield of rapeseed (canola, Brassica napus L.). Plant architecture is the three-dimensional organisation of plant organs, enabling the plant to adapt to and survive in diverse environments. Plant architecture affects crop yield [1]. Therefore, crop breeders have focused on aerial architecture, including plant height, branch or tiller number and angle, leaf shape, size, and angle, and inflorescence morphology [2,3,4]. Rapeseed is the most widely distributed and cultivated oil crop in China, providing over 55% of edible oil in daily life. With the rapid development of the national economy and transfer of a large volume of the rural labour force to urban areas, agricultural farming methods warrant urgent revision. In this light, simplification and mechanisation have become the major targets of rapeseed breeding and industrial development in China [5]. The ideal rapeseed plant architectural traits for mechanical harvest are dwarfness, lodging resistance, branch habit suitable for dense plantation, uniform ripening, cracking resistance, and early maturation [6,7]. Traits related to the branch habit of rapeseed plants include branch position, angle, and number, which are important in the breeding of varieties suitable for mechanised farming [8]. Therefore, the knowledge of rapeseed branch traits and their genetic regulatory mechanisms is fundamental to the genetic improvement of varieties for mechanical harvest.
In vascular plants, the main stem is derived from the primary shoot apical meristem (SAM), and branches differentiate from the axillary meristem (AM) [9]. Branching occurs via a two-step process: initiation of AM in each leaf axil to form a bud, and subsequent outgrowth of the bud [10]. In some plants, the axillary bud is dormant as a result of complex interactions between endogenous developmental signals, including auxin, cytokinin (CK), and strigolactones, and environmental factors, such as shade [11,12,13].
Plant architecture, represented by a set of genetically controlled agronomic traits, is closely linked to plant hormones and signal transduction. The Green Revolution of rice and wheat has primarily been attributed to reduction in plant height through the disruption of gibberellin synthesis (sd1) and inhibition of DELLA protein (Rht-B1b and Rht-D1b) degradation [14,15]. Indole-3-acetic acid (IAA), the first-discovered plant hormone, plays pivotal roles in the regulation of plant architecture. Apical dominance is driven by IAA accumulation in the apex. As an antagonistic hormone of IAA, CK suppresses apical dominance. Isopentenyltransferase (IPT), a CK biosynthetic gene, promotes the outgrowth of axillary buds and inhibits auxin-dependent apical dominance [16].
The phytohormone auxin, which is predominantly represented by IAA, regulates multiple plant developmental processes, such as embryo development, organofaction, lateral root emergence, tropic growth, vascular tissue differentiation, apical dominance and lateral bud initiation through its differential distribution within plant tissues [17,18]. This differential distribution pattern is established by auxin biosynthesis and transport. The key enzymes involved in the main auxin biosynthetic pathways belong to the YUC family of flavin monooxygenases, which consists of 11 YUC genes in Arabidopsis [19]. Differential distribution of synthesised auxin is mainly achieved by a polar cell-to-cell transport system. Auxins are transported to different parts of the plant mainly by four auxin-transporting families, including AUX/LAX (auxin influx carriers), PIN (PIN-FORMED, auxin efflux carriers), ABCB (ATP-binding cassette B (ABCB)/P-glycoprotein (PGP), and PILS (PIN-Likes). PIN and AUX/LAX are distributed in a polar fashion in the plasma membrane, whereas PGP and PILS are present in a non-polar fashion [18,20,21,22,23]. With the exception of AUX/LAX, auxin transporters harbour N-and C-terminal conserved domains along with a variable hydrophilic loop in the transmembrane domain [18,20,21,22]. The functional diversity of different transporters might base on different phosphorylated sites in a variable hydrophilic loop [18,20,21]. The PIN, AUX/LAX, and PGP transporters mediate long distance auxin transport, whereas PILS and PIN5 proteins are involved in intracellular auxin homeostasis [18].
APETALA2/ETHYLENE RESPONSE FACTOR (AP2/ERF) is one of the largest and most important plant-specific transcription factor superfamilies, represented by 147 members in Arabidopsis [24]. All members of this superfamily are characterised by the presence of one or two functional 68-amino acid (aa) repeat motifs, termed the AP2 domains, which possess DNA-binding ability [25,26,27]. Based on their structural features, the AP2/ERF family members in Arabidopsis are classified into four subfamilies: AP2 (18 members), RAV (6 members), EREB-DREB (122 members), and AP2P-ISAMDD1 (1 member) [24]. The AP2 subfamily, characterised by the presence of two AP2 domains, includes several key regulators of different plant growth and developmental processes. The RAV-type transcription factors harbour a single AP2 domain and another conserved C-terminal DNA-binding domain called B3, which responds to touch-related stimuli [28,29]. The largest subfamily EREB-DREB is further divided into 12 subgroups, namely I to X, VI-L, and Xb-L. The members of the X subgroup (ERF108 to ERF115) possess a hallmark conserved N-terminal sequence and are involved in wound signalling and tissue repair [24,27].
The Arabidopsis AP2/ERF transcription factor gene ERF BUD ENHANCER (EBE) (At5g61890, also known as AtERF114), which is highly expressed in proliferating tissues, regulates cell proliferation, axillary bud outgrowth, and shoot branching [30]. A recent study revealed that ERF115, an AP2/ERF transcription factor of the X subgroup, is involved in wound-induced stem cell division and cell sensitivity to auxin [31]. In addition, ERF115 functions as a repressor of adventitious root initiation by integrating the crosstalk between jasmonic acid (JA) and CK [32]. ERF109, another X subgroup member, is induced by wounding, and promotes auxin biosynthesis [33]. In a previous study, we observed that monosulphuron ester sodium (MES) could act as a novel chemical hybridisation agent for rapeseed. Specifically, even at a low concentration (10 mL per plant of 0.1 μg·mL−1), MES induced male sterility and increased branch number in rapeseed [34,35]. Comparative transcriptomics between MES-treated and control plants revealed that approximately 36% (542/1501) of the differentially expressed transcripts associated with anther development, including certain kinases and various transcription factors, were significantly upregulated. Amongst these, an integrase-type DNA-binding superfamily protein was found to share high homology with AtERF114 [35], and was therefore named BnERF114. AtERF114 belongs to the X subgroup of the ERF transcription factor family, and harbours the AP2/ERF domain, which may regulate cell proliferation and promote axillary bud generation and branch growth [30]. However, the characteristics and biological functions of BnERF114 in rapeseed (Brassica napus) remain unclear, and whether the phenotype with increased branch number is related to BnERF114 upregulation in rapeseed plants treated with a low concentration of MES warrants further investigation.
Therefore, to elucidate the biological roles of BnERF114 in plant development, BnERF114 and its paralogs were isolated and subjected to phylogenetic analysis in the present study. The molecular characteristics of BnERF114 were analysed and the biological function of ectopic expression of BnERF114.A1 in Arabidopsis was explored. Our results suggest BnERF114.A1 probably regulates plant shoot branching and plant architecture through an auxin-dependent way in Arabidopsis.

2. Results

2.1. BnERF114s Are Orthologues of AtERF114

To clone the orthologues of EBE (AtERF114) in B. napus, we blasted the full-length protein sequence of AtERF114 (AT5G61890.1) against the Brassica non-redundant protein sequence database of NCBI. As a result, eight highly homologous genes were identified: four from B. napus and two each from B. rapa and B. oleracea (Table S2). To identify the evolutionary relationships of BnERF114s in B. napus, phylogenetic and homologous analyses were conducted using the AP2/ERF conserved domain of BnERF114s, BrERF114s, BoERF114s, and Arabidopsis AP2/ERF superfamily genes. The result suggested that BnERF114.C2 is derived from BoERF114.C2, BnERF114.A6 from BrERF114.A6, and BnERF114.C3 from BoERF114.C3. Meanwhile, BnERF114.A1 may have been derived from BrERF114.A2 (Figure S1A). Phylogenetic analysis of BnERF114s and all Arabidopsis ERF family members showed that BnERF114s are orthologues of AtERF114 (Figure S1B) and belong to the subgroup X-a of the AP2/ERF superfamily [24]. Consistent with AtERF114, all four BnERF114s possess two exons and one intron, and the encoding proteins harbour the conserved CMX-1 motif (Figure 1A,B) and an AP2/ERF domain (Figure 1A,C). These results indicate that BnERF114s are orthologues of AtERF114.

2.2. BnERF114.A1 Is Expressed in Proliferating Tissue

To explore the spatiotemporal expression profile of BnERF114s, we measured their transcriptional levels in 13 different tissues of the rapeseed cultivar ZS9. The expression level of BnERF114.A1 was higher than that of the other three genes (BnERF114.C2, BnERF114.A6, and BnERF114.C3) in all tissues, indicating that BnERF114.A1 probably worked as a major gene amongst the four BnERF114s. BnERF114.A1 exhibited higher expression levels in roots, cotyledons, flowers, sepals, petals, and pods, but lower expression levels in rosette leaves, stem, small and middle buds, stamens, and pistils (Figure 2A). Furthermore, we tested BnERF114.A1 expression levels in the shoot apex of rapeseed ZS9. The result showed that the BnERF114.A1 expression level in the shoot apex was five times higher compared with that in the cauline leaf (Figure S2). Considering the expression profiles of BnERF114s during rapeseed development, BnERF114.A1 was selected for subsequent functional analyses.
To further detect the expression profile of BnERF114.A1, the native BnERF114.A1 promoter (114pro), including 1836 bp upstream of ATG and the CDS of BnERF114.A1, were cloned into a binary expression vector pCAMBIA3301. The recombinant construct 114pro::BnERF114.A1-GUS was introduced into Arabidopsis using Agrobacterium tumefaciens-mediated transformation, and GUS activity in different tissues of transgenic Arabidopsis plants was analysed. BnERF114.A1 was markedly expressed in leaf primordia, shoot apical meristem, leaf marginal meristem, young cauline leaves (Figure 2B–I), senescent leaves, cutting positions (Figure 2J), and reproductive organs, including pistils and anthers (Figure 2K–Q). Therefore, mechanical injuries were inflicted on middle-aged leaves 45 min before GUS staining. Mechanical injury could strongly and rapidly induce BnERF114.A1 expression (Figure 2R). These results suggest that BnERF114.A1 is involved in cell proliferation and wound response. However, the expression profiles of BnERF114.A1 shown by GUS staining were not exactly the same as those identified by qPCR in some tissues, such as roots and cotyledons (Figure 2A,B,E,F). This might be caused by the heterogeneous expression of BnERF114.A1 in Arabidopsis.

2.3. BnERF114.A1 Is Mainly Localised to the Nucleus and Exhibits Transcriptional Activity

To confirm the subcellular localisation of BnERF114.A1, the full-length CDS of BnERF114.A1 from the rapeseed cultivar ZS9 was isolated and fused with eGFP in frame to construct the transient expression vector p35S::BnERF114.A1-eGFP. This transient expression vector was introduced into Nicotiana benthamiana leaf cells to express the BnERF114.A1-eGFP fusion protein, with DAPI as nuclear localisation marker. The results indicated that BnERF114.A1 was mainly localised to the nucleus, while relatively weak signals could be observed in plasma membrane (Figure 3).
The AP2 domain of BnERF114.A1 was predicted to be 83–141 amino acid. According to a previous report [24], AP2 is a DNA-binding domain. Therefore, to examine the transcriptional activity of BnERF114.A1 and functional domain position, we introduced different fragments of BnEFR114.A1 CDS, including full-length CDS, N-terminus fragment (246-), AP2 domain (-177-), and C-terminus fragment (-333) into the pGBKT7 vector. The recombinant constructs were transformed into yeast AH109 and screened on yeast medium SD/-Trp and SD/-Trp/-Ade/-His media. Yeast self-activation experiments confirmed that BnERF114.A1 exhibited transcriptional activity, and the functional region was located at 142–252 aa of the C-terminus (Figure 4).

2.4. Ectopic BnERF114.A1 Expression in Arabidopsis Reduced Plant Height and Increased Branch Number

To explore the effects of BnERF114.A1 on plant architecture, we developed more than ten 35S::BnERF114.A1 (OE35), 114pro::BnERF114.A1 (OE114), 35S::GUS, and 114pro::GUS Arabidopsis transgenic lines, respectively. Because of the strong ectopic expression lines performing a sterile phenotype, we used relatively low-expression transgenic lines for functional analysis. Before the beginning of the bolting stage (-30 days after planting), no phenotypic differences were detected between the wild-type (Col-0) and transgenic plants ectopically expressing BnERF114.A1. At 40 days after planting, ectopic BnERF114.A1 expression significantly inhibited the elongation of the main inflorescence, thus reducing plant height (here, OE35-18-1 as the representative of the OE35 lines and OE114-46-3 as the representative of the OE114 lines showed similar phenotypes within the same genotype) (Figure 5A–D). In addition, ectopic BnERF114.A1 expression accelerated the emergence and outgrowth of lateral branches and first-order rosette branches in transgenic lines (Figure 5E). After 37 days of growth, the OE35 transgenic plants produced more rosette branches than the wild-type plants (Figure 5E). Further, the expression levels of BnERF114.A1 in transgenic and wild-type plants were determined. Both transgenic lines (OE35 and OE114) showed significantly higher expression levels of BnERF114.A1 in the main inflorescences (Figure 5F). The phenotype of Arabidopsis transgenic lines of both empty vectors (35S::GUS, 114pro::GUS) performed no differently to that of wild-type plants (Data not shown here). These results suggest that BnERF114.A1 is involved in the regulation of plant branch habit and apical dominance.

2.5. BnERF114.A1 Overexpression in Arabidopsis Increased Seed Yield

To evaluate the effects of BnERF114.A1 on seed yield, we investigated the yield-related traits of wild-type and transgenic Arabidopsis plants overexpressing BnERF114.A1. Since the OE35 lines showed significantly higher expression levels of BnERF114.A1 than the OE114 lines, we compared the yield-related traits between the OE35 transgenic and wild-type plants. The OE35 transgenic plants produced more siliques per plant (n = 270–320) than the wild-type plants (n = 170) (Figure 6A), although the number of seeds per silique and thousand-seed weight were similar between the two groups (Figure 6B,C). Moreover, the OE35 transgenic plants showed a much higher seed yield (0.12–0.22 g) and biomass (0.8–1.2 g) per plant than the wild-type plants (0.06 g and 0.5 g, respectively) (Figure 6D,E). These results may be because ectopic BnERF114.A1 expression potently promoted the emergence and outgrowth of shoot branches (Figure 5E), which increased the number of siliques per plant (Figure 6A).

2.6. Ectopic BnERF114.A1 Expression Affected IAA Efflux in the Main Inflorescence of Arabidopsis

In plants, apical dominance is linked to the synthesis and distribution of auxin. Auxin synthesised from the apex of the plant is transported in a polar manner down to the lateral branches, thus inhibiting the growth of the lateral buds. Decapitation of Arabidopsis induced AtERF114 expression in the five uppermost lateral branches, in addition to the main inflorescences; thus, these plants produced more lateral branches and exhibited cespitose phenotypes [30]. In the present study, ectopic BnERF114.A1 expression inhibited apical dominance in Arabidopsis; therefore, we hypothesised that either auxin synthesis and/or auxin polar transport was blocked. To test our hypothesis, we examined the expression levels of the IAA biosynthetic genes YUCCA1, YUCCA2, YUCCA4, and YUCCA6, which play pivotal roles in auxin-dependent apex dominance [36]. YUCCA1, YUCCA2, YUCCA4, and YUCCA6 expression levels in the transgenic plants were significantly decreased compared with those in the wild-type plants (Figure 7A). We further examined the expression levels of the IAA transporters PINs, AUX/LAXs, and PGPs, in the main inflorescences of transgenic and wild-type Arabidopsis plants. The expression levels of PIN1, PIN3, PIN6, LAXs, PGP2, and PGP19 were significantly decreased to various degrees (Figure 7B–D), but the expression levels of PIN4, PIN5, and PGP4 were increased in the transgenic plants. These results suggest that ectopic BnERF114.A1 expression inhibits both auxin synthesis and flux in Arabidopsis. Therefore, we speculated that IAA was accumulated in the main inflorescences and cauline leaves of transgenic plants. To confirm this, endogenous IAA levels in the main inflorescences of wild-type and OE35-18-1 transgenic plants were measured through liquid chromatography. As expected, the IAA content of the main inflorescences of the transgenic plants was markedly increased compared with that of the wild-type plants (Figure 7E). However, the IAA content of cauline leaves was lower in the OE35-18-1 transgenic plants than in the wild-type plants (Figure S3). These results indicate that ectopic BnERF114.A1 expression affects endogenous levels of IAA in the main inflorescences and the flux of IAA in Arabidopsis.

3. Discussion

Ideal plant architecture (ideotype) is an important objective of rapeseed breeding [7]. In this context, the identification and characterisation of various candidate genes regulating the ideotype will contribute to the molecular breeding for this crop. In the present study, we characterised a novel candidate ERF transcription factor gene, BnERF114.A1, which belongs to the subgroup X-a of the ERF superfamily. Our results indicated that BnERF114.A1 is localised to the nucleus and possesses transcriptional activity. Moreover, BnERF114.A1 is expressed in proliferating tissues. Ectopic BnERF114.A1 expression in Arabidopsis reduced plant height, inhibited apical dominance, increased shoot branch number, and improved seed yield and biomass per plant. However, this did not affect the harvest index. Finally, BnERF114.A1 regulated plant architecture by affecting the efflux and endogenous levels of IAA in the main inflorescences of Arabidopsis.
A previous study demonstrated high AtERF114 expression in undifferentiated suspension culture cells and callus [37]. Furthermore, it was confirmed that AtERF114 expression was elevated at the S phase of the cell cycle, suggesting that ERF114 regulates cell proliferating and division [38]. In Arabidopsis, AtERF114 is prominently expressed in root tips, shoot apices, young leaves, and reproductive organs [30]. In the present study, BnERF114.A1 was consistently expressed in actively proliferating tissues, such as leaf primordia, shoot apical meristem, leaf marginal meristem, young cauline leaves, and reproductive organs (Figure 4). In addition, previous studies have shown that ERF114 and its homologues, such as ERF109/ERF115, could be induced by reactive oxygen species (ROS)-mediated signalling induced by stress or wounding [31,39,40]. Consistently, in the present study, strong GUS activity was detected in senescent and wounded leaves (Figure 2J,R), suggesting that BnERF114.A1 also responds to ROS-mediated signalling.
AtERF114 promotes axillary bud formation and outgrowth [30]. In the present study, BnERF114.A1 overexpression in Arabidopsis remarkably inhibited apical dominance and promoted first-order lateral branch formation (Figure 5), indicating that BnERF114.A1 probably serves similar functions to AtERF114 in promoting the emergence and outgrowth of axillary buds. AtERF114 belongs to the X-a subgroup of the ERF transcription factor superfamily. This group comprises eight members, namely ERF108–ERF115 [24]. Wound-induced JA can activate ERF109, which upregulates the expression of a tryptophan biosynthesis-related gene (ASA1) in the auxin biosynthetic pathway, resulting in de novo root regeneration [41]. In this context, we measured auxin levels in BnERF114.A1 transgenic lines and observed that BnERF114.A1 overexpression markedly enhanced auxin accumulation in the main inflorescence, suggesting that BnERF114.A1 produces a similar effect on auxin accumulation as AtERF109.
Auxin plays vital roles in regulating plant shoot branching and maintaining apical dominance [42]. The long-distance transport of endogenous IAA occurs in a polar manner, depending on the auxin polar transport carriers [18]. The auxin efflux carrier PIN1 is expressed in vascular tissues and root primordia, regulating adventitious root development and floral bud formation [43,44]. In rice, OsPIN1 downregulation increased plant tiller number depending on the auxin content [45]. Moreover, the intercellular auxin transporter PGP19 is colocalised with PIN1, and can stabilise PIN1 on the cytomembrane, synergistically regulating auxin long-distance basipetal transport [46,47,48]. The triple mutant pin3 pin4 pin7 partially rescues the branching phenotype caused by arr1 mutant, indicating that the positive effects of PIN3, PIN4 and PIN7 on shoot branching are very important [49]. In the present study, ectopic BnERF114.A1 expression suppressed PIN1, PIN3, PIN6, LAXs, PGP2, and PGP19 expression, but increased PIN4, PIN5, and PGP4 expression (Figure 7B–D). The interplay of the different auxin transporters finally resulted in the block of IAA efflux from the apex to the axillary bud. It has been reported that PIN5 is involved in intracellular auxin homeostasis, but not in long-distance auxin transport [18]. However, the relative expression of PIN3 decreased significantly compared with wild-type plants, while the expression of PIN7 made no difference in this study. Thus, we speculated that the increased expression of PIN4 and PIN5 was probably a response to the arrested auxin efflux. In previous studies, the directionality of PGP4 has been shown to be regulated by the concentration of auxin. PGP4 can act as an auxin influx carrier under low IAA concentration, and as an auxin efflux carrier under high IAA concentration [50]. In the present study, the relative expression of PGP4 displayed a significant increase in transgenic plants. This might be caused by the markedly increased IAA levels in the main inflorescence of transgenic plants (Figure 7E). Finally, the inhibition of IAA efflux and accumulation of IAA in the main inflorescence reduced plant height and increased branch number (Figure 5A).
YUCCAs play important roles in endogenous IAA biosynthesis. IAA synthesis-deficient double mutants yuc1yuc4 and yuc2yuc6, triple mutants yuc1yuc2yuc6, yuc1yuc2yuc4, and yuc1yuc4yuc6, and quadruple mutant yuc1yuc2yuc4yuc6 exhibited markedly reduced plant height and suppressed apical dominance [36]. In the present study, ectopic BnERF114.A1 expression suppressed YUCCA1, YUCCA2, YUCCA4, and YUCCA6 expression (Figure 7A), but increased IAA levels in the main inflorescence (Figure 7E). Therefore, we speculated that this increase in IAA levels might be the result of IAA accumulation upon the blockade of IAA efflux from the apex to the axillary bud. However, decreased IAA levels in cauline leaves indicated the arrest of IAA synthesis and transport (Figure S3). The suppression of YUCCA expression may be the result of feedback inhibition via IAA accumulation. This also explains that the blockade of the elongation of transgenic plant main stems arises approximately 10 days after bolting, rather than at the beginning of the bolting stage.
In conclusion, we isolated and characterised BnERF114.A1, an orthologue of AtERF114 in Brassica napus. Ectopic BnERF114.A1 expression in Arabidopsis reduced plant height, increased shoot branch number, arrested apical dominance, and improved seed yield per plant. Furthermore, ectopic BnERF114.A1 expression regulated plant architecture through the blockade of auxin efflux from the apex to the base. Therefore, BnERF114.A1 probably plays an important role in plant architecture regulation in an auxin-dependent way in Arabidopsis.

4. Materials and Methods

4.1. Plant Material and Growth Condition

Brassica napus ‘Zhongshuang No.9′ (ZS9) was planted in the Yangling Regional Test Station of Crop Varieties, Shaanxi, China (34.29° N, 108.06° E) during the growing season of 2017–2018. This cultivar was introduced from the Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan, China, and selfed for at least 10 generations prior to use in the present experiment. Arabidopsis thaliana (Col-0) and transgenic plants were grown at 22 °C under a 16-h light/8-h dark cycle (light intensity 6000–9000 lx) and ~60% humidity in a phytotron.

4.2. Gene Characterisation and Phylogenetic Analysis

The protein sequence of AtERF114 (AT5G61890.1) was obtained from the TAIR (17 November 2018, http://www.arabidopsis.org/) website, and it was used as the query sequence to search for homologous genes in Brassica using the PSI-BLAST tool of NCBI (18 November 2018, http://blast.ncbi.nlm.nih.gov/Blast.cgi). To confirm the genetic relationships of ERF114s from Brassica and Arabidopsis, phylogenetic analysis was performed using MEGA 5 on the conserved AP2 domains (SMART accession number: SM00380). Moreover, sequences of 122 AP2/ERF family proteins from Arabidopsis were downloaded from the TAIR website and used to construct a neighbour-joining (NJ) tree [24].

4.3. Nucleic Acid Isolation

Total RNA was extracted from rapeseed different tissues and transgenic Arabidopsis using a commercial extraction kit (E.Z.N.A.® Plant RNA Kit, OMEGA, Norcross, GA, USA) following the manufacturer’s protocol, and digested with RNA-free DNase I (Invitrogen) to remove DNA contamination. Genomic DNA was extracted from young leaf samples of rapeseed and Arabidopsis plants using the cetyltrimethylammonium bromide (CTAB) method [51]. The quality of the isolated RNA and DNA samples was assessed using 2.0% and 0.8% agarose gel electrophoresis, respectively.

4.4. Cloning of the Coding Sequence (CDS) and Promoter of BnERF114.A1 in Rapeseed

For cloning, first-strand cDNA was synthesised using total RNA isolated from the young pods of rapeseed ZS9 using the GoScript™ Reverse Transcription System (Promega, Madison, WI, USA) according to the manufacturer’s protocol. The CDS of BnERF114.A1 was isolated from cDNA through polymerase chain reaction (PCR) using the high-fidelity thermostable DNA polymerase KOD-FX-NEO (TOYOBO) and the primer pair BnERF114.A1-F and BnERF114.A1-R (Table S1). The PCR conditions were as follows: pre-denaturation at 98 °C for 2 min, followed by 40 cycles of 98 °C for 10 s, 58 °C for 30 s, and 68 °C for 1 min, and final extension at 68 °C for 7 min. The PCR products were cloned into the pMD19-T vector (TaKaRa, Dalian, China), and five randomly selected clones were sequenced.
The promoter of BnERF114.A1 was cloned from the genomic DNA of ZS9 using the primer pair 114pro-F and 114pro-R (Table S1). The PCR conditions were as follows: pre-denaturation at 98 °C for 2 min, followed by 40 cycles at 98 °C for 10 s, 60 °C for 30 s, and 68 °C for 1 min, and final extension at 68 °C for 7 min. The PCR products were cloned into the pMD19-T vector (TaKaRa, Japan), and five randomly selected clones were sequenced.

4.5. Subcellular Localisation of BnERF114.A1

To investigate the subcellular localisation of BnERF114.A1, the primer pair 114SL-F and 114SL-R (Table S1) was used to clone the CDS of BnERF114.A1, and a pGreen-35S::BnERF114.A1-eGFP expression vector was constructed using T4 DNA ligase (TaKaRa, Japan) at 16 °C for 1 h following EcoRI and SpeI double digestion. The constructed vector was confirmed using restriction analysis and sequencing. The recombinant vector was transformed into Agrobacterium tumefaciens GV3101 strain. Agrobacterial suspension containing pGreen-35S::BnERF114.A1-eGFP was injected into the lower epidermis of Nicotiana benthamiana leaves. The transfected plants were kept in the 16 h light/8 h dark greenhouse for two days at 22 °C. The tobacco leaves were cut into pieces and put into DAPI staining solution (Beyotime, C1005) for 5 min at room temperature. The stained leaf pieces were rinsed with PBST [10 mM PBS (pH = 7.4), 0.1% Tween 20] three times. After treatment with DAPI, the infected leaf pieces were observed under a laser confocal microscope (Zeiss, Germany). The excitation wavelengths for eGFP and DAPI were 488 nm and 405 nm, respectively.

4.6. Transcription Activity Analysis of BnERF114.A1

To identify the transcriptional activity of BnERF114.A1 and its precise region, the full-length CDS sequence of BnERF114.A1, the 246 bp region at the 5′-end of BnERF114.A1 that encodes truncated BnERF114.A1 only containing 1–82 amino acid residues (aa) at the N-terminal (BnERF114.A1 N1–82), the 177 bp region that encodes truncated BnERF114.A1 only containing AP2 domain in the 83-141aa region (BnERF114.A1 AP283–141), and the 333 bp region at the 3′-end of BnERF114.A1 that encodes truncated BnERF114.A1 only 142–252 aa at the C-terminal (BnERF114.A1 C142–252) were cloned through PCR using the primer pairs E756-F/E756-R, E246-F/E246-R, E177-F/E177-R, and E333-F/E333-R, respectively (Table S1). The target segments were separately introduced into the pGBKT7 (Clontech) vector using T4 DNA ligase (TaKaRa, Japan) at 16 °C for 1 h following NdeI and EcoRI double digestion (TaKaRa, Japan). The recombinant constructs were transformed into yeast strain AH109 using the PEG-LiCl method [52]; an empty pGBKT7 vector and a modified pGBKT7-p53 (containing only the DNA-binding region) were used as the negative controls. These colonies were screened on SD/-Trp and SD/-Trp/-Ade/-His media.

4.7. Construction of a BnERF114.A1 Overexpression Vector and Arabidopsis Transformation

The CDS of BnERF114.A1 was introduced into a binary expression vector pCAMBIA3301 driven by the CAMV 35S promoter (35S) through BamHI and SpeI double digestion and T4 DNA ligation (TaKaRa, Japan) to generate the 35S::BnERF114.A1-GUS vector. The expression cassette 114pro::BnERF114.A1-GUS was constructed by substituting the 35S promoter of the 35S::BnERF114.A1-GUS vector for the native promoter of BnERF114.A1 (including 1836 bp upstream of ATG) through EcoRI and BamHI double digestion and T4 ligation (TaKaRa, Japan). The resulting vectors 35S::BnERF114.A1-GUS and 114pro::BnERF114.A1-GUS were confirmed by sequencing and transformed into the Agrobacterium tumefaciens GV3101 strain. The two expression cassettes and two empty vectors (35S::GUS, 114pro::GUS) were transformed into A. thaliana (Col-0) using Agrobacterium tumefaciens-mediated floral-dip method [53]. Transgenic plants were screened by spraying 0.1% glufosinate (BASTA) on seedling leaves, and independent transgenic homozygous lines were obtained by selfing and spraying 0.1% glufosinate on seedling leaves. To assess the effects of BnERF114.A1 on transgenic plants, wild-type and homozygous transgenic Arabidopsis lines were grown in green houses as described above.

4.8. GUS Staining Analysis of BnERF114.A1 Promoter Activity

GUS activity was determined as previously described [54] in T3 homozygous transgenic plants carrying 114pro::BnERF114.A1-GUS. Different tissues were incubated in GUS staining solution (50 mM phosphate buffer (pH 7.2), 0.01% Triton X-100, 2 mM K3Fe(CN)6, 2 mM K4[Fe(CN)6]·3H2O, 10 mM EDTA, and 0.2 mM X-Gluc) for 16 h at 37 °C. Wounded leaves were infiltrated with the staining solution after injury with a knife and incubated at 37 °C for 45 min. Following treatment with increasing concentrations of ethyl alcohol, plant tissues were observed under a stereomicroscope (Olympus SZ61) coupled to a camera (Canon 3000D).

4.9. Quantitative Real-Time PCR (qRT-PCR)

qRT-PCR was used to analyse the spatiotemporal expression patterns of BnERF114s in B. napus. The cDNA products of different tissues were normalised to the housekeeping gene ubiquitin-conjugating enzyme 21 of B. napus (BnUBC21, Gene ID: 106348550) as the internal reference. Three biological and three technical replicates were included for each RNA sample/primer combination in qRT-PCR. Four primer pairs, namely BnERF114.A1-qF/BnERF114.A1-qR, BnERF114.C2-qF/BnERF114.C2-qR, BnERF114.A6-qF/BnERF114.A6-qR, and BnERF114.C3-qF/BnERF114.C3-qR, were used for analysing the expression levels of BnERF114.A1, BnERF114.C2, BnERF114.A6, and BnERF114.C3, respectively (Table S1).
The cDNA products of the main inflorescences from wild-type and transgenic plants were normalised to AtUBC21 (TAIR ID: At5g25760) as the reference to determine the expression levels of auxin polar transport-related and IAA biosynthetic genes. Three biological replicates and three technical replicates were included for each RNA sample/primer combination. qRT-PCR was performed using the primer pairs of AtPIN1, AtPIN2, AtPIN3, AtPIN4, AtPIN5, AtPIN6, AtPIN7, AtPIN8, AtAUX1, AtLAX1, AtLAX2, AtLAX3, AtPGP1, AtPGP2, AtPGP4, AtPGP19, AtYUCCA1, AtYUCCA2, AtYUCCA4, and AtYUCCA6, as shown in Table S1. The PCR conditions were as follows: pre-denaturation at 94 °C for 4 min, followed by 40 cycles at 94 °C for 20 s, 60 °C for 20 s, and 72 °C for 20 s, and finally, a melting curve was determined from 70 °C to 95 °C for 5 s. qRT-PCR was performed using GoTaq® qPCR Master Mix (A6001, Promega, USA) on the QuantStudio™ 7 Flex Real-Time PCR System (Applied Biosystems). For each reaction run, the specificity of the amplification was validated, and the threshold cycle above background was calculated using Bio-Rad iCycler; PCR efficiency was close to 100%.
The relative expression levels of the individual target genes were calculated using a modified double delta method [55]. Error bars of qRT-PCR data in all figures represent standard deviations, and the significance of differences was estimated at the p = 0.05 level using Student’s t-test.

4.10. Endogenous IAA Content Analysis

The main inflorescences and cauline leaves of 40-day-old transgenic and wild-type Arabidopsis plants were collected for IAA measurement. Three biological replicates were included, with five plants per replicate. IAA content was determined using liquid chromatography–mass spectrometry on the Agilent 160 Infinity-6420 (Agilent Technologies) platform by Tsingtao Sci-Tech Innovation Co., Ltd. (China).

4.11. Phenotypic and Statistical Analyses

To evaluate the effects of BnERF114.A1, the plant height, length of the main inflorescence, and number of primary branches in transgenic and wild-type plants were determined at 30, 37, 44, and 51 days after planting. The number of siliques per plant, number of seeds per silique, seed yield per plant, and biomass per plant were evaluated at maturity. The traits were assessed in 3–10 randomly selected transgenic or wild-type plants. Statistical analysis was performed using unpaired t-test or one-way ANOVA to evaluate significant differences.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/ijms23042210/s1.

Author Contributions

X.W., S.H. and H.Z. conceived and designed the experiments. J.L. and Y.G. conducted the experiments and analysed the data. C.D., H.Y. and L.L. conducted parts of experiments. L.G. developed recombinant vectors. J.L. wrote the draft of the manuscript, and S.H. and H.Z. revised the the manuscript. All authors have read and agreed to the published version of the manuscript.

Funding

This work was financially supported by Open Project Fund of Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, P.R. China (Grant no. KF2018006) and National Natural Science Foundation of China (Grant no. 31801393).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Conflicts of Interest

The authors declare no conflict of interest.

Abbreviations

ERFETHYLENE RESPONSE FACTOR
SAMshoot apical meristem
AMaxillary meristem
CKcytokinin
IAAindole-3-acetic acid
AP2APETALA2
PINPIN-FORMED
ABCBATP-binding cassette B
PGPP-glycoprotein
aaamino acid
JAjasmonic acid
MESmonosulphuron ester sodium
CTABcetyltrimethylammonium bromide
CDScoding sequence
qRT-PCRquantitative real-time polymerase chain reaction

References

  1. Reinhardt, D.; Kuhlemeier, C. Plant architecture. EMBO Rep. 2002, 3, 846–851. [Google Scholar] [CrossRef] [PubMed]
  2. Wang, Y.; Li, J. Molecular basis of plant architecture. Annu. Rev. Plant Biol. 2008, 59, 253–279. [Google Scholar] [CrossRef] [PubMed]
  3. Wang, B.; Smith, S.M.; Li, J. Genetic regulation of shoot architecture. Annu. Rev. Plant Biol. 2018, 69, 437–468. [Google Scholar] [CrossRef] [PubMed]
  4. Li, H.; Li, J.; Song, J.; Zhao, B.; Guo, C.; Wang, B.; Zhang, Q.; Wang, J.; King, G.J.; Liu, K. An auxin signaling gene BnaA3.IAA7 contributes to improved plant architecture and yield heterosis in rapeseed. New Phytol. 2019, 222, 837–851. [Google Scholar] [CrossRef] [PubMed]
  5. Luo, H.; Tang, C.; Guan, C.; Wu, M. Research progress in rapeseed mechanized harvest. J. Agric. Mech. Res. 2015, 37, 1–8. [Google Scholar]
  6. Fu, T. On research and application of heterosis in rapeseed. Chin. J. Oil Crop Sci. 2008, 30, 1–5. [Google Scholar]
  7. Fu, T.; Zhou, Y. Progress and future development of hybrid rapeseed in China. Eng. Sci. 2013, 5, 13–18. [Google Scholar]
  8. Duan, X.J. Genome-Wide Association Analysis of Plant-Type Related Traits in Rapeseed (Brassica napus L.). Master’s Thesis, Southwest University, Chongqing, China, 2015. [Google Scholar]
  9. McSteen, P.; Leyser, O. Shoot branching. Annu. Rev. Plant Biol. 2005, 56, 353–374. [Google Scholar] [CrossRef]
  10. Shimizu-Sato, S.; Mori, H. Control of outgrowth and dormancy in axillary buds. Plant Physiol. 2001, 127, 1405–1413. [Google Scholar] [CrossRef]
  11. Kebrom, T.H.; Brutnell, T.P.; Finlayson, S.A. Suppression of sorghum axillary bud outgrowth by shade, phyB and defoliation signalling pathways. Plant Cell Environ. 2010, 33, 48–58. [Google Scholar] [CrossRef]
  12. Domagalska, M.A.; Leyser, O. Signal integration in the control of shoot branching. Nat. Rev. Mol. Cell Biol. 2011, 12, 211–221. [Google Scholar] [CrossRef] [PubMed]
  13. Wang, Y.; Li, J. Branching in rice. Curr. Opin. Plant Biol. 2011, 14, 94–99. [Google Scholar] [CrossRef] [PubMed]
  14. Peng, J.; Richards, D.E.; Hartley, N.M.; Murphy, G.P.; Devos, K.M.; Flintham, J.E.; Beales, J.; Fish, L.J.; Worland, A.J.; Pelica, F.; et al. ‘Green revolution’ genes encode mutant gibberellin response modulators. Nature 1999, 400, 256–261. [Google Scholar] [CrossRef] [PubMed]
  15. Sasaki, A.; Ashikari, M.; Ueguchi-Tanaka, M.; Itoh, H.; Nishimura, A.; Swapan, D.; Ishiyama, K.; Saito, T.; Kobayashi, M.; Khush, G.S.; et al. A mutant gibberellin-synthesis gene in rice. Nature 2002, 416, 701–702. [Google Scholar] [CrossRef]
  16. Shimizu-Sato, S.; Tanaka, M.; Mori, H. Auxin-cytokinin interactions in the control of shoot branching. Plant Mol. Biol. 2009, 69, 429–435. [Google Scholar] [CrossRef] [Green Version]
  17. Cardarelli, M.; Cecchetti, V. Auxin polar transport in stamen formation and development: How many actors? Front. Plant Sci. 2014, 5, 333. [Google Scholar] [CrossRef] [Green Version]
  18. Mohanta, T.K.; Bashir, T.; Hashem, A.; Allah, E.F.A.; Khan, A.L.; Al-Harrasi, A.S. Molecular players of auxin transport systems: Advances in genomic and molecular events. J. Plant Interact. 2018, 13, 483–495. [Google Scholar] [CrossRef] [Green Version]
  19. Zhao, Y. Auxin biosynthesis: A simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol. Plant 2012, 5, 334–338. [Google Scholar] [CrossRef] [Green Version]
  20. Habets, M.E.J.; Offringa, R. PIN-driven polar auxin transport in plant developmental plasticity: A key target for environmental and endogenous signals. New Phytol. 2014, 203, 362–377. [Google Scholar] [CrossRef]
  21. Adamowski, M.; Friml, J. PIN-dependent auxin transport: Action, regulation, and evolution. Plant Cell 2015, 27, 20–32. [Google Scholar] [CrossRef] [Green Version]
  22. Swarup, R.; Bhosale, R. Developmental Roles of AUX1/LAX Auxin Influx Carriers in Plants. Front. Plant Sci. 2019, 10, 1306. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  23. Sisi, N.A.; Růžička, K. ER-Localized PIN Carriers: Regulators of Intracellular Auxin Homeostasis. Plants 2020, 9, 1527. [Google Scholar] [CrossRef] [PubMed]
  24. Nakano, T.; Suzuki, K.; Fujimura, T.; Shinshi, H. Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol. 2006, 140, 411–432. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  25. Jofuku, K.D.; den Boer, B.G.; Van Montagu, M.; Okamuro, J.K. Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. Plant Cell 1994, 6, 1211–1225. [Google Scholar]
  26. Ohme-Takagi, M.; Shinshi, H. Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell 1995, 7, 173–182. [Google Scholar] [PubMed] [Green Version]
  27. Heyman, J.; Canher, B.; Bisht, A.; Christiaens, F.; De Veylder, L. Emerging role of the plant ERF transcription factors in coordinating wound defense responses and repair. J. Cell Sci. 2018, 131, jcs208215. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  28. Kagaya, Y.; Ohmiya, K.; Hattori, T. RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants. Nucleic Acids Res. 1999, 27, 470–478. [Google Scholar] [CrossRef]
  29. Kagaya, Y.; Hattori, T. Arabidopsis transcription factors, RAV1 and RAV2, are regulated by touch-related stimuli in a dose-dependent and biphasic manner. Genes Genet. Syst. 2009, 84, 95–99. [Google Scholar] [CrossRef] [Green Version]
  30. Mehrnia, M.; Balazadeh, S.; Zanor, M.I.; Mueller-Roeber, B. EBE, an AP2/ERF transcription factor highly expressed in proliferating cells, affects shoot architecture in Arabidopsis. Plant Physiol. 2013, 162, 842–857. [Google Scholar] [CrossRef] [Green Version]
  31. Canher, B.; Heyman, J.; Savina, M.; Devendran, A.; Eekhout, T.; Vercauteren, I.; Prinsen, E.; Matosevich, R.; Xu, J.; Mironova, V.; et al. Rocks in the auxin stream: Wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration. Proc. Natl. Acad. Sci. USA 2020, 117, 16667–16677. [Google Scholar] [CrossRef]
  32. Lakehal, A.; Dob, A.; Rahneshan, Z.; Novák, O.; Escamez, S.; Alallaq, S.; Strnad, M.; Tuominen, H.; Bellini, C. ETHYLENE RESPONSE FACTOR 115 integrates jasmonate and cytokinin signaling machineries to repress adventitious rooting in Arabidopsis. New Phytol. 2020, 228, 1611–1626. [Google Scholar] [CrossRef] [PubMed]
  33. Ye, B.B.; Shang, G.D.; Pan, Y.; Xu, Z.G.; Zhou, C.M.; Mao, Y.B.; Bao, N.; Sun, L.J.; Xu, T.D.; Wang, J.W. AP2/ERF transcription factors integrate age and wound signals for root regeneration. Plant Cell 2020, 32, 226–241. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  34. Cheng, Y.; Wang, Q.; Li, Z.; Cui, J.; Hu, S.; Zhao, H.; Chen, M. Cytological and comparative proteomic analyses on male sterility in Brassica napus L. induced by the chemical hybridization agent monosulphuron ester sodium. PLoS ONE 2013, 8, e80191. [Google Scholar] [CrossRef] [PubMed]
  35. Li, Z.; Cheng, Y.; Cui, J.; Zhang, P.; Zhao, H.; Hu, S. Comparative transcriptome analysis reveals carbohydrate and lipid metabolism blocks in Brassica napus L. male sterility induced by the chemical hybridization agent monosulfuron ester sodium. BMC Genom. 2015, 16, 206. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  36. Cheng, Y.; Dai, X.; Zhao, Y. Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes. Dev. 2006, 20, 1790–1799. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  37. Zimmermann, P.; Hirsch-Hoffmann, M.; Hennig, L.; Gruissem, W. GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 2004, 136, 2621–2632. [Google Scholar] [CrossRef] [Green Version]
  38. Menges, M.; Hennig, L.; Gruissem, W.; Murray, J.A. Genome-wide gene expression in an Arabidopsis cell suspension. Plant Mol. Biol. 2003, 53, 423–442. [Google Scholar] [CrossRef]
  39. Kong, X.; Tian, H.; Yu, Q.; Zhang, F.; Wang, R.; Gao, S.; Xu, W.; Liu, J.; Shani, E.; Fu, C.; et al. PHB3 maintains root stem cell niche identity through ROS-responsive AP2/ERF transcription factors in Arabidopsis. Cell Rep. 2018, 22, 1350–1363. [Google Scholar] [CrossRef] [Green Version]
  40. Zhou, W.; Lozano-Torres, J.L.; Blilou, I.; Zhang, X.; Zhai, Q.; Smant, G.; Li, C.; Scheres, B. A jasmonate signaling network activates root stem cells and promotes regeneration. Cell 2019, 177, 942–956. [Google Scholar] [CrossRef]
  41. Zhang, G.; Zhao, F.; Chen, L.; Pan, Y.; Sun, L.; Bao, N.; Zhang, T.; Cui, C.; Qiu, Z.; Zhang, Y.; et al. Jasmonate-mediated wound signalling promotes plant regeneration. Nat. Plants 2019, 5, 491–497. [Google Scholar] [CrossRef]
  42. Leyser, O. Regulation of shoot branching by auxin. Trends Plant Sci. 2003, 8, 541–545. [Google Scholar] [CrossRef] [PubMed]
  43. Okada, K.; Ueda, J.; Komaki, M.K.; Bell, C.J.; Shimura, Y. Requirement of the auxin polar transport system in early stages of Arabidopsis floral bud formation. Plant Cell 1991, 3, 677–684. [Google Scholar] [CrossRef] [Green Version]
  44. Benková, E.; Michniewicz, M.; Sauer, M.; Teichmann, T.; Seifertová, D.; Jürgens, G.; Friml, J. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 2003, 115, 591–602. [Google Scholar] [CrossRef] [Green Version]
  45. Xu, M.; Zhu, L.; Shou, H.; Wu, P. A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice. Plant Cell Physiol. 2005, 46, 1674–1681. [Google Scholar] [CrossRef] [PubMed]
  46. Blakeslee, J.J.; Bandyopadhyay, A.; Lee, O.R.; Mravec, J.; Titapiwatanakun, B.; Sauer, M.; Makam, S.N.; Cheng, Y.; Bouchard, R.; Adamec, J.; et al. Interactions among PIN-FORMED and P-Glycoprotein auxin transporters in Arabidopsis. Plant Cell 2007, 19, 131–147. [Google Scholar] [CrossRef] [Green Version]
  47. Gälweiler, L.; Guan, C.; Müller, A.; Wisman, E.; Mendgen, K.; Yephremov, A.; Palme, K. Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 1998, 282, 2226–2230. [Google Scholar] [CrossRef] [Green Version]
  48. Titapiwatanakun, B.; Blakeslee, J.J.; Bandyopadhyay, A.; Yang, H.; Mravec, J.; Sauer, M.; Cheng, Y.; Adamec, J.; Nagashima, A.; Geisler, M.; et al. ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis. Plant J. 2009, 57, 27–44. [Google Scholar] [CrossRef]
  49. Waldie, T.; Leyser, O. Cytokinin Targets Auxin Transport to Promote Shoot Branching. Plant Physiol. 2018, 177, 803–818. [Google Scholar] [CrossRef] [Green Version]
  50. Yang, H.; Murphy, A.S. Functional expression and characterization of Arabidopsis ABCB, AUX1 and PIN auxin transporters in Schizosaccharomyces pombe. Plant J. 2009, 59, 179–191. [Google Scholar] [CrossRef]
  51. Porebski, S.; Bailey, L.G.; Baum, B.R. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol. Biol. Rep. 1997, 15, 8–15. [Google Scholar] [CrossRef]
  52. Gietz, R.D.; Schiestl, R.H. Quick and easy yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat. Protoc. 2007, 2, 35–37. [Google Scholar] [CrossRef] [PubMed]
  53. Zhang, X.; Henriques, R.; Lin, S.S.; Niu, Q.W.; Chua, N.H. Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat. Protoc. 2006, 1, 641–646. [Google Scholar] [CrossRef] [PubMed]
  54. Plesch, G.; Ehrhardt, T.; Mueller-Roeber, B. Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression. Plant J. 2001, 28, 455–464. [Google Scholar] [CrossRef] [PubMed]
  55. Pfaffl, M.W.; Horgan, G.W.; Dempfle, L. Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res. 2002, 30, e36. [Google Scholar] [CrossRef]
Figure 1. The conserved structures of ERF114 proteins. (A) phylogenetic analysis and the structure diagrams of ERF114 proteins in Brassica napus and Arabidopsis. (B) alignment of the CMX-1 motif of ERF114 in B. napus, B. rapa, and B. oleracea. (C) alignment of the conserved AP2/ERF domain of ERF114 in B. napus, B. rapa, and B. oleracea. In (B,C), amino acids with black background indicate conserved amino acid residues across ERF114s.
Figure 1. The conserved structures of ERF114 proteins. (A) phylogenetic analysis and the structure diagrams of ERF114 proteins in Brassica napus and Arabidopsis. (B) alignment of the CMX-1 motif of ERF114 in B. napus, B. rapa, and B. oleracea. (C) alignment of the conserved AP2/ERF domain of ERF114 in B. napus, B. rapa, and B. oleracea. In (B,C), amino acids with black background indicate conserved amino acid residues across ERF114s.
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Figure 2. BnERF114s expression profile. (A) relative expression levels of BnERF114s in rapeseed different tissues. Gene expression levels were normalised to the reference gene BnUBC21 (Gene ID: 106348550). Relative expression levels of BnERF114s were compared with the expression of BnERF114.C2 in flower. Each column represents the mean of three independent biological replicates, and the error bars indicate standard deviation. Different lowercase letter means significant difference at p = 0.05 level. (B) to (R), BnERF114.A1 expression patterns identified through histochemical GUS staining in Arabidopsis OE114-46-3 transgenic line. (B) cotyledon (bar = 100 μm). (C) leaf primordium (bar = 20 μm). (D) root hair (bar = 50 μm). (E) root elongation zone (bar = 50 μm). (F) root tip (bar = 50 μm). (GJ) the youngest to the oldest rosette leaf, respectively (GI, bars = 2 mm; J, bar = 9 mm). (K) new cauline leaves (bar = 1 mm). (L) mature cauline leaf (bar = 2 mm). (M) main inflorescence (bar = 2 mm). (N) branched inflorescence (bar = 1 mm). (O) flower (bar = 500 μm). (P) anther (bar = 200 μm). (Q) pot (bar = 2 mm). (R) wounded mature rosette leaf (bar = 2 mm).
Figure 2. BnERF114s expression profile. (A) relative expression levels of BnERF114s in rapeseed different tissues. Gene expression levels were normalised to the reference gene BnUBC21 (Gene ID: 106348550). Relative expression levels of BnERF114s were compared with the expression of BnERF114.C2 in flower. Each column represents the mean of three independent biological replicates, and the error bars indicate standard deviation. Different lowercase letter means significant difference at p = 0.05 level. (B) to (R), BnERF114.A1 expression patterns identified through histochemical GUS staining in Arabidopsis OE114-46-3 transgenic line. (B) cotyledon (bar = 100 μm). (C) leaf primordium (bar = 20 μm). (D) root hair (bar = 50 μm). (E) root elongation zone (bar = 50 μm). (F) root tip (bar = 50 μm). (GJ) the youngest to the oldest rosette leaf, respectively (GI, bars = 2 mm; J, bar = 9 mm). (K) new cauline leaves (bar = 1 mm). (L) mature cauline leaf (bar = 2 mm). (M) main inflorescence (bar = 2 mm). (N) branched inflorescence (bar = 1 mm). (O) flower (bar = 500 μm). (P) anther (bar = 200 μm). (Q) pot (bar = 2 mm). (R) wounded mature rosette leaf (bar = 2 mm).
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Figure 3. Subcellular localisation of BnERF114.A1. Transient expression vector 35S::BnERF114.A1-eGFP was introduced into Nicotiana benthamiana leaf cells. The infected leaf was stained using DAPI as nuclear localisation marker. Bars = 30 μm.
Figure 3. Subcellular localisation of BnERF114.A1. Transient expression vector 35S::BnERF114.A1-eGFP was introduced into Nicotiana benthamiana leaf cells. The infected leaf was stained using DAPI as nuclear localisation marker. Bars = 30 μm.
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Figure 4. Transcriptional activity and functional region of BnERF114.A1 tested by yeast system. GAL4 BD indicates that Modified P53 (a modified P53 protein only containing DNA binding domain), intact BnERF114.A1, and truncated BnERF114.A1 were separately fused with GAL4 BD. pGBKT7 is empty vector used as a control. Modified P53 is used as a negative control.
Figure 4. Transcriptional activity and functional region of BnERF114.A1 tested by yeast system. GAL4 BD indicates that Modified P53 (a modified P53 protein only containing DNA binding domain), intact BnERF114.A1, and truncated BnERF114.A1 were separately fused with GAL4 BD. pGBKT7 is empty vector used as a control. Modified P53 is used as a negative control.
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Figure 5. Effects of BnERF114.A1 ectopic expression on plant phenotype. WT, wild-type (Col-0) Arabidopsis; OE35-18-1, transgenic line expressing BnERF114.A1-eGFP-GUS under the 35S promoter; OE114-46-3, transgenic line expressing BnERF114.A1-GUS under the 114pro promoter. (A) phenotypes of OE35-18-1 and OE114-46-3 transgenic plants at 40 days old. (B) phenotypes of the main inflorescence and first rosette branches of OE35-18-1 and OE114-46-3 transgenic plants at 40 days old, in (A,B) Bars = 2 cm. (C) plant height of OE35-18-1 and OE114-46-3 transgenic lines at 30, 37, 44, and 51 days, each point represents mean ± SD of 5–10 independent individuals. (D) length of the main inflorescence in OE35-18-1 and OE114-46-3 transgenic lines at 37, 44, and 51 days; each column represents mean ± SD of 5–10 independent individuals. (E) number of first rosette branches in OE35-18-1 and OE114-46-3 transgenic lines at 37, 44, and 51 days. In (D,E), asterisks indicate significant differences at the p = 0.05 level, and “ns” indicates non-significant differences at the p = 0.05 level. (F) relative BnERF114.A1 expression in the main inflorescence of OE35-18-1 and OE114-46-3 plants at 40 days old; gene expression levels were normalised to the reference gene AtUBC21 (At5g25760); each column represents mean ± SD from three independent biological replicates, and each biological replicate included five individuals. Different lowercase letters indicate significant differences at the p = 0.05 level.
Figure 5. Effects of BnERF114.A1 ectopic expression on plant phenotype. WT, wild-type (Col-0) Arabidopsis; OE35-18-1, transgenic line expressing BnERF114.A1-eGFP-GUS under the 35S promoter; OE114-46-3, transgenic line expressing BnERF114.A1-GUS under the 114pro promoter. (A) phenotypes of OE35-18-1 and OE114-46-3 transgenic plants at 40 days old. (B) phenotypes of the main inflorescence and first rosette branches of OE35-18-1 and OE114-46-3 transgenic plants at 40 days old, in (A,B) Bars = 2 cm. (C) plant height of OE35-18-1 and OE114-46-3 transgenic lines at 30, 37, 44, and 51 days, each point represents mean ± SD of 5–10 independent individuals. (D) length of the main inflorescence in OE35-18-1 and OE114-46-3 transgenic lines at 37, 44, and 51 days; each column represents mean ± SD of 5–10 independent individuals. (E) number of first rosette branches in OE35-18-1 and OE114-46-3 transgenic lines at 37, 44, and 51 days. In (D,E), asterisks indicate significant differences at the p = 0.05 level, and “ns” indicates non-significant differences at the p = 0.05 level. (F) relative BnERF114.A1 expression in the main inflorescence of OE35-18-1 and OE114-46-3 plants at 40 days old; gene expression levels were normalised to the reference gene AtUBC21 (At5g25760); each column represents mean ± SD from three independent biological replicates, and each biological replicate included five individuals. Different lowercase letters indicate significant differences at the p = 0.05 level.
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Figure 6. Yield-related traits of BnERF114.A1 transgenic plants. (A) number of siliques per plant. (B) number of seeds per silique. (C) thousand-seed weight (mg). (D) yield per plant (g). (E) biomass per plant (g). (F) harvest index. Values represent the data of 3 wild-type and 10 OE35 transgenic plants. Asterisk indicates significant differences at the p = 0.05 level. “ns” indicates non-significant differences at the p = 0.05 level.
Figure 6. Yield-related traits of BnERF114.A1 transgenic plants. (A) number of siliques per plant. (B) number of seeds per silique. (C) thousand-seed weight (mg). (D) yield per plant (g). (E) biomass per plant (g). (F) harvest index. Values represent the data of 3 wild-type and 10 OE35 transgenic plants. Asterisk indicates significant differences at the p = 0.05 level. “ns” indicates non-significant differences at the p = 0.05 level.
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Figure 7. Relative expression levels of IAA-related genes and endogenous IAA level in main inflorescence of transgenic plants. (A) relative expression levels of four YUCCA genes (AtYUCCA1 [At4g32540], AtYUCCA2 [At4g13260], AtYUCCA4 [At5g11320], and AtYUCCA6 [At5g25620]); the expression level AtYUCCA1 in the wild-type (WT) being set as a unit. (B) relative expression levels of eight PIN family genes (AtPIN1 [At1g73590], AtPIN2 [At5g57090], AtPIN3 [At1g70940], AtPIN4 [At2g01420], AtPIN5 [At5g16530], AtPIN6 [At1g77110], AtPIN7 [At1g23080], and AtPIN8 [At5g15100]); the expression level of AtPIN1 in the WT being set a unit. (C) relative expression level of four AUX/LAX family genes (AtAUX1 [At2g38120], AtLAX1 [At5g01240], AtLAX2 [At2g21050], and AtLAX3 [At1g77690]), and the expression level of AtLAX2 in the WT being set as a unit. (D) relative expression levels of four PGP family genes (AtPGP1 [At2g36910], AtPGP2 [At4g25960], AtPGP4 [At2g47000], and AtPGP19 [At3g28860]); the expression level of AtPGP1 in the WT being set as a unit. Gene expression levels were normalised to the reference gene AtUBC21 (At5g25760). (E) endogenous IAA levels in the main inflorescences of the WT and transgenic plants at 40 days old. Each column represents mean ± SD from three independent biological replicates, and each biological replicate included five individuals. Asterisk indicates significant differences at the p = 0.05 level; “ns” indicates non-significant differences at the p = 0.05 level.
Figure 7. Relative expression levels of IAA-related genes and endogenous IAA level in main inflorescence of transgenic plants. (A) relative expression levels of four YUCCA genes (AtYUCCA1 [At4g32540], AtYUCCA2 [At4g13260], AtYUCCA4 [At5g11320], and AtYUCCA6 [At5g25620]); the expression level AtYUCCA1 in the wild-type (WT) being set as a unit. (B) relative expression levels of eight PIN family genes (AtPIN1 [At1g73590], AtPIN2 [At5g57090], AtPIN3 [At1g70940], AtPIN4 [At2g01420], AtPIN5 [At5g16530], AtPIN6 [At1g77110], AtPIN7 [At1g23080], and AtPIN8 [At5g15100]); the expression level of AtPIN1 in the WT being set a unit. (C) relative expression level of four AUX/LAX family genes (AtAUX1 [At2g38120], AtLAX1 [At5g01240], AtLAX2 [At2g21050], and AtLAX3 [At1g77690]), and the expression level of AtLAX2 in the WT being set as a unit. (D) relative expression levels of four PGP family genes (AtPGP1 [At2g36910], AtPGP2 [At4g25960], AtPGP4 [At2g47000], and AtPGP19 [At3g28860]); the expression level of AtPGP1 in the WT being set as a unit. Gene expression levels were normalised to the reference gene AtUBC21 (At5g25760). (E) endogenous IAA levels in the main inflorescences of the WT and transgenic plants at 40 days old. Each column represents mean ± SD from three independent biological replicates, and each biological replicate included five individuals. Asterisk indicates significant differences at the p = 0.05 level; “ns” indicates non-significant differences at the p = 0.05 level.
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Lyu, J.; Guo, Y.; Du, C.; Yu, H.; Guo, L.; Liu, L.; Zhao, H.; Wang, X.; Hu, S. BnERF114.A1, a Rapeseed Gene Encoding APETALA2/ETHYLENE RESPONSE FACTOR, Regulates Plant Architecture through Auxin Accumulation in the Apex in Arabidopsis. Int. J. Mol. Sci. 2022, 23, 2210. https://doi.org/10.3390/ijms23042210

AMA Style

Lyu J, Guo Y, Du C, Yu H, Guo L, Liu L, Zhao H, Wang X, Hu S. BnERF114.A1, a Rapeseed Gene Encoding APETALA2/ETHYLENE RESPONSE FACTOR, Regulates Plant Architecture through Auxin Accumulation in the Apex in Arabidopsis. International Journal of Molecular Sciences. 2022; 23(4):2210. https://doi.org/10.3390/ijms23042210

Chicago/Turabian Style

Lyu, Jinyang, Yuan Guo, Chunlei Du, Haibo Yu, Lijian Guo, Li Liu, Huixian Zhao, Xinfa Wang, and Shengwu Hu. 2022. "BnERF114.A1, a Rapeseed Gene Encoding APETALA2/ETHYLENE RESPONSE FACTOR, Regulates Plant Architecture through Auxin Accumulation in the Apex in Arabidopsis" International Journal of Molecular Sciences 23, no. 4: 2210. https://doi.org/10.3390/ijms23042210

APA Style

Lyu, J., Guo, Y., Du, C., Yu, H., Guo, L., Liu, L., Zhao, H., Wang, X., & Hu, S. (2022). BnERF114.A1, a Rapeseed Gene Encoding APETALA2/ETHYLENE RESPONSE FACTOR, Regulates Plant Architecture through Auxin Accumulation in the Apex in Arabidopsis. International Journal of Molecular Sciences, 23(4), 2210. https://doi.org/10.3390/ijms23042210

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