Effect of Ionization Degree of Poly(amidoamine) Dendrimer and 5-Fluorouracil on the Efficiency of Complex Formation—A Theoretical and Experimental Approach
Abstract
:1. Introduction
2. Results and Discussion
2.1. SAXS and DLS
2.2. 1H NMR Spectroscopy
2.3. X-ray Photoelectron Spectroscopy (XPS)
2.4. Molecular Dynamics (MD)
3. Materials and Methods
3.1. Materials
3.2. Dynamic Light Scattering (DLS)
3.3. Small Angle X-ray Scattering (SAXS)
3.4. 1H NMR Spectroscopy
3.5. X-ray Photoelectron Spectroscopy (XPS)
3.6. MD Simulations—Models and Methods
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
PAMAM dendrimers | poly(amidoamine) dendrimers |
G4PAMAM | poly(amidoamine) dendrimer of fourth generation |
5FU | 5-Fluorouracil |
G4PAMAM–5FU | 5-Fluorouracil complex with fourth generation of dendrimer |
Rg | gyration radius |
RH | hydrodynamic radius |
D | self-diffusion coefficient |
BE | binding energy |
References
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pH | [a] Rg (nm) | [b] Rg (nm) | [c] RH (nm) |
---|---|---|---|
SAXS | MD | DLS | |
10.2 | 1.87 ± 0.02 | 1.47 ± 0.01 | 2.45 ± 0.05 [12] |
7.0 | 2.11 ± 0.02 | - | 2.67 ± 0.05 |
4.3 | 2.17 ± 0.02 | - | 2.79 ± 0.05 |
G4:5FU | pH | D (m2/s) × 10−11 | RH (nm) |
---|---|---|---|
1:0 | 10.3 | 8.10 ± 0.07 | 2.97 ± 0.03 |
1:25 | 8.8 | 7.96 ± 0.07 | 3.03 ± 0.03 |
1:50 | 8.3 | 7.73 ± 0.13 | 3.12 ± 0.06 |
1:100 | 7.8 | 6.44 ± 0.18 | 3.7 ± 0.1 |
Core Excitation | G4 BE (eV) Area (%) | 5FU BE (eV) Area (%) | G4-5FU BE (eV) Area (%) | Assignation |
---|---|---|---|---|
O 1s | 529.1 2.9 | --- | 529.7 6.8 | O–metal(support) |
531.0 78.2 | 531.4 52.1 | 531.0 49.8 | carboxyl in PAMAM amide group | |
532.0 18.9 | 533.2 47.9 | 532.1 42.5 | C=O/OH | |
--- | --- | 534.1 0.9 | chemisorbed water | |
N 1s | 397.4 4.1 | --- | 397.1 3.5 | =N– |
399.0 59.7 | 398.7 39.1 | 398.4 38.1 | C–NH–C | |
399.6 36.2 | 400.5 60.9 | 400.0 58.4 | N–C=O | |
C 1s | 285.0 31.9 | 285.0 11.9 | 285.0 43.6 | C–C/C–H |
285.6 51.1 | 286.2 55.8 | 286.3 19.1 | C–O/C–N | |
287.7 17.0 | 288.4 28.3 | 288.0 30.6 | –NH–C=O | |
--- | 290.5 4.0 | 290.0 6.7 | C–F | |
F 1s | --- | 683.6 25.1 | 683.6 18.0 | F–metal (support) |
685.0 6.2 | 685.5 4.8 | F in degraded 5FU | ||
687.5 64.7 | 687.0 76.3 | F in 5FU | ||
688.8 4.0 | 689.0 0.9 | C–F |
Protonation Degree (%) | Rg (nm) | Aspect Ratio | Asphericity Factor | ||
---|---|---|---|---|---|
Iz/Ix | Iz/Iy | ||||
S1 | 0 | 1.47 ± 0.01 | 1.50 ± 0.11 | 1.20 ± 0.03 | 0.0136 |
S2 | 10 | 1.46 ± 0.01 | 1.60 ± 0.05 | 1.12 ± 0.02 | 0.0178 |
S3 | 20 | 1.54 ± 0.02 | 1.73 ± 0.07 | 1.19 ± 0.04 | 0.0238 |
Property/System | S1 | S2 | S3 | ||||||
---|---|---|---|---|---|---|---|---|---|
Energy (kJ/mol) per single 5FU molecule | Total | LJ | Coul | Total | LJ | Coul | Total | LJ | Coul |
−4.60 | −2.74 | −1.83 | −21.47 | −7.93 | −13.54 | −34.50 | −12.10 | −22.40 | |
N(t > 10 ns) | 0 | 6 | 12 | ||||||
N(t < 10 ns) | 8 | 12 | 13 |
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Szota, M.; Wolski, P.; Carucci, C.; Marincola, F.C.; Gurgul, J.; Panczyk, T.; Salis, A.; Jachimska, B. Effect of Ionization Degree of Poly(amidoamine) Dendrimer and 5-Fluorouracil on the Efficiency of Complex Formation—A Theoretical and Experimental Approach. Int. J. Mol. Sci. 2023, 24, 819. https://doi.org/10.3390/ijms24010819
Szota M, Wolski P, Carucci C, Marincola FC, Gurgul J, Panczyk T, Salis A, Jachimska B. Effect of Ionization Degree of Poly(amidoamine) Dendrimer and 5-Fluorouracil on the Efficiency of Complex Formation—A Theoretical and Experimental Approach. International Journal of Molecular Sciences. 2023; 24(1):819. https://doi.org/10.3390/ijms24010819
Chicago/Turabian StyleSzota, Magdalena, Pawel Wolski, Cristina Carucci, Flaminia Cesare Marincola, Jacek Gurgul, Tomasz Panczyk, Andrea Salis, and Barbara Jachimska. 2023. "Effect of Ionization Degree of Poly(amidoamine) Dendrimer and 5-Fluorouracil on the Efficiency of Complex Formation—A Theoretical and Experimental Approach" International Journal of Molecular Sciences 24, no. 1: 819. https://doi.org/10.3390/ijms24010819
APA StyleSzota, M., Wolski, P., Carucci, C., Marincola, F. C., Gurgul, J., Panczyk, T., Salis, A., & Jachimska, B. (2023). Effect of Ionization Degree of Poly(amidoamine) Dendrimer and 5-Fluorouracil on the Efficiency of Complex Formation—A Theoretical and Experimental Approach. International Journal of Molecular Sciences, 24(1), 819. https://doi.org/10.3390/ijms24010819