Determining Gene Order Patterns in the Suillus and Boletales through Comparative Analysis of Their Mitogenomes
Abstract
:1. Introduction
2. Results
2.1. Features of the Five Suillus Mitogenomes
2.2. PCGs of the Five Suillus Mitogenomes
2.3. Gene Rearrangement in the Five Suillus Mitogenomes
2.4. Phylogenetic Relationships of Boletales
2.5. Gene Order Analysis of Boletales
2.6. Evolutionary Rates of Boletales
3. Discussion
4. Materials and Methods
4.1. Sample Collection, DNA Isolation, and Sequencing
4.2. Assembly, Genome Annotation, and Sequence Analysis
4.3. Phylogenetic Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Species | Length (bp) | GC Rate (%) | AT Skew | GC Skew | tRNAs | Introns |
---|---|---|---|---|---|---|
S. bovinus | 89,628 | 20.7 | −0.009 | 0.060 | 25 | 9 |
S. huapi | 97,173 | 19.7 | 0.006 | 0.073 | 26 | 7 |
S. placidus | 63,141 | 22.5 | −0.010 | 0.067 | 25 | 6 |
S. sibiricus | 60,791 | 21.3 | −0.024 | 0.066 | 25 | 6 |
Suillus sp. | 98,881 | 19.6 | 0.002 | 0.073 | 25 | 9 |
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Tao, J.; Wang, X.; Long, Y.; Gao, Z.; Zhang, G.; Guo, Z.; Wang, G.; Xu, G.; Wang, Y.; Liu, H. Determining Gene Order Patterns in the Suillus and Boletales through Comparative Analysis of Their Mitogenomes. Int. J. Mol. Sci. 2024, 25, 9597. https://doi.org/10.3390/ijms25179597
Tao J, Wang X, Long Y, Gao Z, Zhang G, Guo Z, Wang G, Xu G, Wang Y, Liu H. Determining Gene Order Patterns in the Suillus and Boletales through Comparative Analysis of Their Mitogenomes. International Journal of Molecular Sciences. 2024; 25(17):9597. https://doi.org/10.3390/ijms25179597
Chicago/Turabian StyleTao, Jiawei, Xianyi Wang, Yaohang Long, Zexin Gao, Gongyou Zhang, Zhongyao Guo, Guoyu Wang, Guangyin Xu, Yaping Wang, and Hongmei Liu. 2024. "Determining Gene Order Patterns in the Suillus and Boletales through Comparative Analysis of Their Mitogenomes" International Journal of Molecular Sciences 25, no. 17: 9597. https://doi.org/10.3390/ijms25179597