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Article

Investigating the Effect of Enzymatically-Derived Blackcurrant Extract on Skin Staphylococci Using an In Vitro Human Stratum Corneum Model

by
Marija Ćorović
1,*,†,
Anja Petrov Ivanković
2,†,
Ana Milivojević
1,
Klaus Pfeffer
3,
Bernhard Homey
4,
Patrick A. M. Jansen
5,
Patrick L. J. M. Zeeuwen
5,
Ellen H. van den Bogaard
5 and
Dejan Bezbradica
1
1
Faculty of Technology and Metallurgy, University of Belgrade, Karnegijeva 4, 11000 Belgrade, Serbia
2
Innovation Center, Faculty of Technology and Metallurgy, Karnegijeva 4, 11000 Belgrade, Serbia
3
Department of Microbiology, University Hospital Düsseldorf, Medical Faculty, Heinrich-Heine-University Düsseldorf, 40225 Düsseldorf, Germany
4
Department of Dermatology, University Hospital Düsseldorf, Medical Faculty, Heinrich-Heine-University Düsseldorf, 40225 Düsseldorf, Germany
5
Department of Dermatology, Radboud University Medical Center, 6525 GA Nijmegen, The Netherlands
*
Author to whom correspondence should be addressed.
These authors contributed equally to this work.
Pharmaceutics 2025, 17(4), 487; https://doi.org/10.3390/pharmaceutics17040487
Submission received: 12 March 2025 / Revised: 31 March 2025 / Accepted: 3 April 2025 / Published: 8 April 2025

Abstract

:
Background/Objectives: Numerous intrinsic and extrinsic stressors can disrupt the balance of the skin microbiome, leading to the development of various skin diseases. It has been proven that coagulase-negative staphylococci (CoNS) are important commensals for maintaining skin microbiome homeostasis and fighting cutaneous pathogens such as Staphylococcus aureus (S. aureus). Here, we examined the influence of polyphenol-rich enzymatic blackcurrant extract (EBCE) on pathogenic coagulase-positive S. aureus strains and beneficial CoNS, like Staphylococcus epidermidis (S. epidermidis), to explore its potential for rebalancing the skin microbiota. Methods: The polyphenol profile of EBCE was determined by ultra-high-pressure liquid chromatography–tandem mass spectrometry. Microwell plate assays were employed to study the effect of EBCE on five S. aureus strains isolated from the skin of atopic dermatitis patients. An in vitro human stratum corneum model was used to test its effect on mixed bacterial cultures. Results: EBCE inhibited the growth of all tested S. aureus strains by 80–100% at the highest tested concentration after 7 h. No microbial growth was observed at the highest tested EBCE concentration using the stratum corneum model inoculated with one selected pathogen (S. aureus SA-DUS-017) and one commensal laboratory strain (S. epidermidis DSM 20044). The lowest tested concentration did not interfere with S. aureus growth but strongly stimulated the growth of S. epidermidis (~300-fold colony forming unit increase). In addition, low EBCE concentrations strongly stimulated CoNS growth in microbiome samples taken from the armpits of healthy volunteers that were spiked with S. aureus SA-DUS-017. Conclusions: These preclinical data support further testing of EBCE-enriched topical preparations as potential cutaneous prebiotics in human studies.

Graphical Abstract

1. Introduction

Skin is the human interface with the external environment and is colonized by diverse microorganisms [1]. Healthy human skin is inhabited by commensal microorganisms, with a significant share of coagulase-negative staphylococci (CoNS), while at the same time continuously being exposed to a large number of pathogenic microorganisms [2]. Staphylococcus aureus (S. aureus) belongs to the coagulase-positive staphylococci (CoPS) and is one of the most common opportunistic pathogens of the skin [3]. It is usually not present on healthy skin, but it often colonizes lesional skin of atopic dermatitis (AD) patients and contributes to the inflammation process in this disease [4]. Disturbed balance of skin microbiota, which is reflected by decreased microbiome diversity and depletion of commensal microorganisms, could be a significant obstacle in combating infections caused by S. aureus [5,6,7,8]. Numerous cutaneous microorganisms, including commensal CoNS, are producers of molecules capable of inhibiting the growth and colonisation of other (potentially harmful) microorganisms, primarily S. aureus, or change their way of behaving, thus able to reverse microbial dysbiosis of the skin and play a significant role in the prevention and/or treatment of associated skin diseases [9]. A number of comprehensive studies proved that increased CoNS abundance correlates with decreased proliferation of skin pathogens such as S. aureus, highlighting their importance for the treatment of AD [10,11,12,13]. Having in mind the importance of these interactions of commensal CoNS with S. aureus for shaping up the composition of skin microbiota and fighting skin infections, it is not surprising that there is a heightened interest in agents that could selectively stimulate skin commensals and help restore disturbed homeostasis of the skin microbiome.
We have recently shown that enzymatically derived blackcurrant extract (EBCE), rich in different polyphenols, can exhibit a stimulatory effect on the Staphylococcus epidermidis (S. epidermidis) DSM 20044 strain and inhibit the growth of the S. aureus ATCC 25923 and Cutibacterium acnes (C. acnes) ATCC 11827 strains [14]. In general, there is growing evidence that certain biomolecules, including those from plant extracts, could influence the growth of skin microbiota representatives [15,16,17]. However, most early-phase skin-prebiotic studies are currently being performed in a liquid medium that does not mimic the surface of the human skin. Therefore, ongoing research aims for simpler and more reliable test methods that utilize systems capable of better mimicking in vivo conditions, particularly the skin surface and the nutrient sources that support bacterial growth.
Hereby, we tried to bridge a gap between early screening phases of prospective skin prebiotics in liquid mediums and more complex examinations on 3D skin models and clinical studies by introducing evaluations using a simple and reliable stratum corneum model. In this in vitro model, human callus taken from the heels of healthy volunteers serves as a substrate and nutrient source for bacterial growth. Its suitability was confirmed on single cultures of several skin commensals and pathogens, as well as on complete skin microbiomes of healthy volunteers [18].
In this study, we examined the influence of EBCE obtained using previously optimized enzyme-assisted processes on the growth of skin staphylococci. First, we performed a detailed compositional analysis of the extract regarding present polyphenols. We tested the effect of various EBCE concentrations on the growth of 5 different clinical S. aureus strains, isolated from the lesional skin of AD patients, in a microwell plate assay to see if the effect of EBCE is strain-specific and to narrow the concentration range for further examinations. We selected one S. aureus strain (SA-DUS-017) that was subsequently grown together with the skin commensal S. epidermidis (DSM 20044) and skin microbiome samples using the in vitro human stratum corneum model. Selective mannitol salt agar (MSA) plates were used in order to individually monitor the growth of beneficial CoNS and pathogenic CoPS. The data obtained in this study suggest that EBCE may serve as a prebiotic for CoNS and thereby potentially can restore a dysbiotic AD skin microbiome.

2. Materials and Methods

2.1. Materials

Blackcurrants used for extract preparation were purchased from Drenovac d.o.o., Arilje, Serbia. Viscozyme® L was supplied by Novozymes (Bagsvaerd, Denmark), while Rohapect® MC was a kind donation from AB Enzymes (Darmstadt, Germany). Five clinical isolates of S. aureus strains (SA-DUS-number) were collected from lesional skin of patients with AD [19]. Bacterial strain Staphylococcus epidermidis DSM 20044 was obtained from Leibniz Institute DSMZ (German Collection of Microorganisms and Cell Culture GmbH, Braunschweig, Germany). Phosphate-buffered saline (PBS) was obtained from Fresenius Kabi GmbH (Graz, Austria). Agar and Columbia blood agar were purchased from Becton, Dickinson and Co., (Sparks, MD, USA). Brain heart infusion (BHI) medium was from Mediaproducts BV (Groningen, The Netherlands), while Muller Hinton (MH) broth was obtained from Sigma-Aldrich (Schnelldorf, Germany). For mannitol salt agar preparation, yeast extract, D-mannitol, NaCl, phenol red, and agar, all purchased from Sigma-Aldrich (Schnelldorf, Germany), were used. All chemicals used for the compositional analysis of blackcurrant extract, as well as chemicals used for extraction buffer preparation, were also supplied from Sigma-Aldrich (Schnelldorf, Germany).

2.2. Methods

2.2.1. Preparation of Blackcurrant Extract

Blackcurrant extract was obtained under previously optimized conditions [14]. Briefly, milled blackcurrants and 0.1 M phosphate buffer pH = 4.5 were mixed together in a ratio of 1:10 and incubated for 1 h at 50 °C and 200 rpm with 0.05 mL of Viscozyme® L and Rohapect® (ratio 2:1) per gram of blackcurrant dry matter. After finishing the extraction process, the sample was submerged in a boiling water bath in order to inactivate enzymes and was centrifuged at 6000 rpm for 10 min. Blackcurrant extract was obtained by decanting supernatant and reducing its volume using vacuum evaporation to one-third of the original. The extract was kept frozen at −20 °C prior to use.

2.2.2. Polyphenol Profiling

Ultra-high-pressure liquid chromatography–tandem mass spectrometry (UHPLC–MS/MS) was employed in order to determine the polyphenol profile in EBCE. The experimental work was carried out using an UHPLC 1290 Infinity II instrument (Agilent Technologies, Santa Clara, CA, USA), with a quaternary pump, a column oven, and an autosampler, interfaced to the triple quadrupole mass spectrometer (TQ MS) (Series 6470 TQ, Agilent Technologies, Santa Clara, CA, USA) equipped with Agilent Jet Stream (AJS) electrospray ion source (ESI) source. The separation of compounds was performed using a Zorbax Eclipse Plus C18 column RRHD (50 mm × 2.1 mm; 1.8 μm, Agilent Technologies, Santa Clara, CA, USA). The mobile phase was composed of 0.1% formic acid in water (solvent A) and 0.1% formic acid in methanol (solvent B). The following gradient was used: 0–1 min, 5% B; 1–6 min, 5–50% B; 6–10 min, 50–90% B; 10–12 min, 90% B; 12–14 min, 90–5% B; 14–17 min, 5% B. During analysis, the mobile phase flow rate was 0.30 mL/min, the column temperature was 30 °C, and the injection volume was 2 μL. After separation, the compounds were analyzed using a mass detector. Positive and negative ion modes were recorded (separately), and the instrument was operated in Dynamic Multiple Reaction Monitoring (MRM) mode (to increase the analysis specificity) under following conditions: capillary voltage, 3000 V, nozzle voltage, 1500 V, desolvation gas (nitrogen) temperature, 250 °C, desolvation gas (nitrogen) flow, 12 L/min, nebulizer, 30 psi, sheath gas (nitrogen) temperature, 300 °C, sheath gas (nitrogen) flow, 11 L/min. Different mass spectrometric parameters, such as ionisation mode, fragmentor voltage (FV), and collision energy (CE), were determined for each MRM transition that was monitored. System operation (data collection and processing) was controlled by Agilent Technologies (Santa Clara, CA, USA) MassHunter software (revisions B.06.01 and B.07.00). External calibration curves using a least-squares linear regression analysis were used for the assay of compounds under investigation. Standard stock solutions were prepared in methanol and further diluted with water/0.1% formic acid to obtain calibration standards at concentrations in the range between 0.01 and 2.50 μg/mL. The correlation coefficients of the calibration curve ranged between 0.9936 and 0.9999.

2.2.3. Culturing Bacteria

Bacterial strains were inoculated on Columbia blood agar at 37 °C overnight (o/n). A single colony of each plate was picked and cultured o/n in MH or BHI medium at 37 °C and 225 rpm. For the 96-well plate assay, the o/n culture in the MH medium was diluted 1000 times. 100 µL aliquots of bacterial suspensions were combined with predefined amounts of EBCE diluted in MH medium, reaching a total volume of 200 µL per well. Plates were incubated at 37 °C for 7 h. In the case of the in vitro human stratum corneum model, the o/n culture in the BHI medium was diluted 10 times and allowed to grow for another 3 h to reach exponential bacterial growth. The bacteria were collected by centrifugation at 5000 rpm for 5 min, washed twice with PBS, and finally resuspended in 3 mL of PBS. The bacteria were diluted in PBS to a concentration of ~5 × 105 colony forming units (CFU)/mL. Bacterial suspension aliquots of 20 μL for each bacteria were added to each well of the stratum corneum model in a 24-well plate, resulting in bacterial concentrations of ~104 CFU of each bacteria per each well. When samples containing human microbiome were examined on the model, approximately the same total number of CFU was used. The bacteria on the model were incubated for 24 h at 32 °C.

2.2.4. Preparation of the Callus-Based Stratum Corneum Model

Human callus powder collected from the heels of 5 healthy volunteers by a callus rasp (Ped Egg™) was mixed, frozen in liquid nitrogen, and subsequently ground up using a Micro Dis-membrator U (B. Braun Biotech International, Melsungen, Germany). The pulverized callus was resuspended in PBS to form a 2% suspension. This suspension was autoclaved and stored at 4 °C until use. For the stratum corneum model preparation, a 2% agar solution in PBS was prepared and autoclaved. 1 mL of sterile agar was added to each well of the 24-well plates and, after drying, covered with 100 μL of the previously prepared sterile 2% callus suspension. These plates were dried for 4 h in a sterile hood on a heat block at 42 °C with the lid open and stored at 4 °C prior to use.

2.2.5. Microbial Growth Monitoring

For the microwell plate assay, microbial growth was monitored by the measurements of optical density at 600 nm (OD600). Results were expressed as percentage inhibition/stimulation compared to the control sample (without EBCE). In the case of the stratum corneum model, the entire model consisting of agar, callus, and bacteria was removed from the well and placed in a 50 mL tube with 10 mL PBS and then vortexed at high speed for 1 min in order to detach bacteria and suspend them. One ml of the solution containing bacterial cells was transferred to an Eppendorf tube and serially diluted in 10-fold steps. Ten μL of each dilution was placed on MSA plates and incubated at 37 °C for 48 h. Visible yellow and pink colonies originating from CoPS (S. aureus SA-DUS-017) and CoNS (S. epidermidis DSM 20044 or CoNS from the skin of healthy volunteers), respectively, were counted for each dilution and used for calculating their ratio.

2.2.6. Collection of Microbiome Samples

Microbiome samples from the armpits of 7 healthy volunteers (5 female and 2 male) were collected by swabbing their skin with sample collection swabs (Epicentre Biotechnologies, Madison, WI, USA) in accordance with the previously described procedure [20]. All swabs were transferred to one tube with 10 mL of PBS, centrifuged at 5000 rpm for 5 min, and resuspended in 1 mL of PBS. Twenty μL of this bacterial suspension was placed on the surface of an in vitro stratum corneum model and spiked with ~103 CFU S. aureus (SA-DUS-017), followed by incubation, extraction, dilution, and growing on MSA plates as described above. The suspension was serially diluted in steps of 10, inoculated twice on Columbia blood agar plates, and incubated at 37 °C for 24 h under both aerobic and anaerobic conditions to determine the initial number of viable colonies in the swabs. For testing the presence of CoPS in swabs, the same serially diluted samples were plated on MSA, and no CoPS were detected (no yellow colonies).

2.2.7. Statistical Analysis

All experiments were performed in duplicates, with the exception of experiments involving microbiome samples, which were conducted in triplicates, and values presented in graphs represent the mean values of independent experiments with error bars showing standard deviation. For the results shown in figures statistical analysis was performed using one-way ANOVA with Dunnett correction for multiple testing by comparing different dosages of EBCE with those of its own control. p-values are shown with an asterisk (* p < 0.05, ** p < 0.01, or *** p < 0.001). Statistical analysis was performed using GraphPad Prism 10.4.1.

3. Results and Discussion

3.1. Determination of the Polyphenolic Profile of Enzymatically Derived Blackcurrant Extract

We previously reported that enzyme-aided extraction of biomolecules from blackcurrant is a suitable way of producing extracts with high polyphenol content and enhanced antioxidant activity and proved presence of four main anthocyanin compounds (delphinidin-3-glucoside, delphinidin-3-rutinoside, cyaniding-3-glucoside, and cyaniding-3-rutinoside) [14,21]. Before testing the effect of EBCE on different skin microbiota representatives, we performed a more detailed analysis of its polyphenol composition. By employing the UHPLC–MS/MS method, we identified 20 more less abundant phenolic compounds (Table 1). This versatile polyphenol profile of EBCE, which includes different important polyphenol classes such as phenolic acids, anthocyanins, flavonols, flavanols, and flavanones, correlates with very high bioactivity (e.g., antioxidant, anticarcinogenic, and photoprotective) previously demonstrated by our research group and other related studies [14,16,22], making it a highly valuable multifunctional ingredient of topical formulations, regardless of its effect on skin microbiota.

3.2. Effect of Enzymatic Blackcurrant Extract on Clinical S. aureus Strains

By using S. aureus ATCC 25923, S. epidermidis DSM 20044, and C. acnes ATCC 11827 strains grown in a liquid medium enriched with different concentrations of EBCE, we previously demonstrated that it could exhibit a prebiotic-like effect on these particular strains [14]. Knowing that immune-modulatory and protective effects, as well as pathogenicity of skin microbes, are highly strain-specific, the first aim was to investigate the influence of EBCE on five different clinical S. aureus strains isolated from the skin of AD patients. The results from microwell plate experiments indicated that at the highest EBCE concentration of 100 gallic acid equivalent (GAE)/mL, bacterial growth was reduced by 80–100% after 7 h of cultivation (Figure 1). In contrast, lower EBCE concentrations had less to no inhibitory effect on the growth of the five tested strains but also no growth-promoting effect. Within the same concentration range, the growth of the commensal CoNS representative, S. epidermidis DSM 20044, was stimulated up to ~30% at a concentration of 25 µg GAE/mL and lower, with its growth rate gradually decreasing as concentrations increased [14]. The obtained results align with previous findings, indicating that polyphenols can have both antimicrobial and stimulatory effects on various microbial species, including those associated with both human health and disease [23,24,25,26]. These previous studies corroborate the conclusion that at high doses, EBCE could be used as an antimicrobial agent against S. aureus strains, while lower concentrations have the potential to be used as a microbiome-friendly skin care ingredient or skin prebiotic that can stimulate the growth of skin commensals. To test this hypothesis, we conducted experiments with S. aureus SA-DUS-017 as a model strain and the previously used S. epidermidis DSM 20044 commensal strain by growing them together on an in vitro human stratum corneum model.

3.3. Effect of Enzymatic Blackcurrant Extract on the Growth of S. aureus SA-DUS-017 and S. epidermidis DSM 20044 Co-Cultured on the Stratum Corneum Model

We tested EBCE in a more complex environment, more similar to in vivo conditions, to examine how it affects the growth of the skin commensal S. epidermidis DSM 20044 and the skin pathogen S. aureus SA-DUS-017. Therefore, both bacterial strains were inoculated on the stratum corneum model, and microbial growth with and without EBCE supplementation was compared. We found that the CoPS representative (S. aureus) is outgrowing the CoNS (S. epidermidis) representative in the control sample (Figure 2a), that the CoNS representative is outgrowing the CoPS representative in a sample with 3.8 µg GAE/cm2 of EBCE (Figure 2b), and that no viable colonies of both strains are present in a sample with 76.0 µg GAE/cm2 of EBCE (Figure 2c).
As shown in Figure 3a, the lowest tested EBCE concentration, 3.8 µg GAE/cm2, did exhibit a mild increase (but not statistically significant) of growth on S. aureus SA-DUS-017 compared to the control (no EBCE), while the growth of S. epidermidis was strongly stimulated. This growth stimulation of S. epidermidis, however, decreases at higher EBCE concentrations. In contrast, between 11.4 µg GAE/cm2 and 30.4 µg GAE/cm2 of EBCE, a stimulation of S. aureus growth was observed. Similarly, as in the microwell plate experiment, S. aureus AS-DUS-017 growth was strongly inhibited by high EBCE concentrations (45.6–76.0 µg GAE/cm2). These concentrations also demonstrated a strong inhibitory effect on the S. epidermidis strain, implicating that EBCE at high concentrations does not show selectivity. Based on these results, it is obvious that only the lowest tested EBCE concentration, 3.8 µg GAE/cm2, exhibits a significant prebiotic-like effect leading to ~300-fold increase in CFU of S. epidermidis compared to the control without EBCE. Having in mind that S. epidermidis has been recently suggested as a skin probiotic due to its role in collagen type I induction, skin ceramide level increase, prevention of water loss of damaged skin, and generally improving the skin’s protective function [27,28,29], this is a noteworthy result. S. epidermidis/S. aureus ratio at the lowest tested concentration was 41.2, which is significantly higher compared to the control sample without EBCE (ratio of 0.23) in which the S. aureus strain overgrew the CoNS representative (Figure 3b). Compared to our previous study, where the effect of EBCE on the same S. epidermidis strain was tested in a liquid culture, the extract showed a significantly higher degree of stimulation on the callus-based stratum corneum model, which highlights the differences in results obtained across different systems [14]. In addition, an optimum concentration change toward lower EBCE concentrations was observed, compared to experiments in a liquid medium, which could be mostly ascribed to differences in nutrients available for bacterial growth. While media used for the cultivation of microorganisms are generally rich sources of nutrients that provide high growth rates and a low susceptibility to other supplemented agents, the stratum corneum model mimics the conditions of human skin by providing proteins from dead corneocytes as the main nutrient source. Similar discrepancies in the effect of several cosmetic ingredients on the growth and virulence factor expression in the S. aureus C-29 strain were previously reported in a multicomponent keratin-based in vitro model compared with the BHI growth medium [23]. It is clear that after the preliminary screening of potential topical agents targeting the skin microbiota in liquid media, using a stratum corneum model for medium-throughput testing is appropriate before progressing to more complex studies with organotypic 3D skin models and in vivo trials.

3.4. Effect of Enzymatic Blackcurrant Extract on the Growth of S. aureus SA-DUS-017 and Skin Microbiome Samples Co-Cultured on the Stratum Corneum Model

After demonstrating the prebiotic potential of EBCE on the callus-based stratum corneum model with two bacterial strains, we tested its effect on skin microbiome samples taken from the armpits of healthy volunteers spiked with S. aureus SA-DUS-017. As proven by plating microbiome samples on MSA plates, CoPS were not present in armpit swabs, indicating that all detected yellow colonies in these samples originated from S. aureus SA-DUS-017 growth. In the absence of EBCE, S. aureus SA-DUS-017 outgrew armpit CoNS on the stratum corneum model (Figure 4a). In contrast, CoNS from the armpit microbiota outgrew S. aureus SA-DUS-017 in the same system when supplemented with EBCE at a concentration of 3.8 µg GAE/cm2 (Figure 4b).
After 24 h of growth on the stratum corneum model without EBCE supplementation (control), an approximately 3-fold higher CFU number of S. aureus SA-DUS-017 was detected compared to total CoNS, corresponding to a ratio of 0.29 (Figure 5). On the other hand, both EBCE concentrations (3.8 µg GAE/cm2 and 19.0 µg GAE/cm2) showed a positive effect on the CoNS/S. aureus SA-DUS-017 ratio but to a different extent. While a concentration of 19.0 µg GAE/ stimulated both CoNS and S. aureus SA-DUS-017, resulting in a ratio of 1.95, a dose of 3.8 µg GAE/cm2 led to a significant stimulation of CoNS but not S. aureus SA-DUS-017, resulting in a CoNS/S. aureus SA-DUS-017 ratio of 18.2 after 24 h of growth on the stratum corneum model. It should be emphasized that lower EBCE concentrations, which exhibited a stimulatory effect on CoNS, were not capable of inhibiting S. aureus SA-DUS-017 growth (see Figure 1). However, the stimulatory effect that EBCE showed on CoNS could potentially indirectly lead to a reduced growth of S. aureus. Recently, it was shown that several CoNS can significantly contribute to skin homeostasis by preventing colonization of pathogens, including S. aureus, through various mechanisms [11,12,30]. For example, the most abundant CoNS representative, S. epidermidis, could compete with S. aureus for nutrients and adhesion sites on the skin surface and prevent S. aureus biofilm formation by serine protease (Esp) activity [31]. It releases bacteriocins and other antimicrobial molecules that can cause S. aureus cell lysis. In addition, it can activate TRL2 receptors that are able to subsequently induce the production of human defensins hBD2 and hBD3 by keratinocytes [32,33]. Furthermore, EBCE can be applied in prebiotic products intended for topical application, during and/or after antibiotic treatments, to fight potential skin microbiome dysbiosis by supporting the repopulation of the skin with commensal CoNS. Further studies should be done to confirm the effectiveness of increased CoNS growth by EBCE on S. aureus proliferation and virulence factors formation. Also, topical formulations with incorporated EBCE need to be tested in in vitro organotypic 3D skin models and on healthy volunteers and AD patients to prove its in vivo efficacy in rebalancing the human skin microbiome.

4. Conclusions

The specific mechanism by which individual commensals, including CoNS, cooperate with the skin’s immune system and keratinocytes to combat pathogen colonization is not fully understood. Nevertheless, it is clear that the diversity and abundance of bacteria present on the skin are important factors in maintaining skin health. Results obtained within the current study demonstrate that enzymatically derived blackcurrant extract is a potent agent capable of selectively stimulating the in vitro growth of commensal CoNS on the human stratum corneum model. This serves as a firm basis for further investigation in more complex systems like in vitro 3D skin equivalents or in vivo clinical trials, which will shed further light on the effect of EBCE on the cutaneous microbiome.

Author Contributions

Conceptualization, M.Ć., P.A.M.J., P.L.J.M.Z., E.H.v.d.B. and D.B.; software, A.P.I. and A.M.; validation, M.Ć., A.P.I. and A.M.; formal analysis, M.Ć., A.P.I., A.M. and P.A.M.J.; investigation, M.Ć., A.P.I., A.M. and P.A.M.J.; resources, E.H.v.d.B., K.P., B.H. and D.B.; data curation, M.Ć. and A.P.I.; writing—original draft preparation M.Ć., A.P.I. and A.M.; writing—review and editing, P.A.M.J., P.L.J.M.Z., E.H.v.d.B. and D.B.; visualization, M.Ć., A.P.I. and A.M., supervision, P.L.J.M.Z., E.H.v.d.B. and D.B.; project administration, E.H.v.d.B. and D.B., funding acquisition, E.H.v.d.B. and D.B. All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by the Ministry of Science, Technological Development and Innovations of the Republic of Serbia [Contract No. 451-03-136/2025-03/200135 and 451-03-136/2025-03/200287] and has received funding from Science Fund of the Republic of Serbia, programme IDEAS, PrIntPrEnzy [grant number 7750109] and Horizon Europe 2021–2027 research and innovation program, TwinPrebioEnz [grant agreement ID 101060130].

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The original contributions presented in this study are included in the article. Further inquiries can be directed to the corresponding author.

Acknowledgments

Rohapect® MC enzyme preparation was a kind donation from AB Enzymes (Darmstadt, Germany). Graphical Abstract was created with BioRender.com (https://www.biorender.com, accessed on 12 March 2025).

Conflicts of Interest

The authors declare that they have no known competing financial or personal interests.

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Figure 1. Effect of different EBCE concentrations on the growth of clinical S. aureus strains. Input was ~104 CFU for each S. aureus SA-DUS strain, and bacterial growth was calculated from OD600 values compared to the control sample of each strain without EBCE supplementation (0 µg GAE/mL). A strong reduction growth is seen at the highest EBCE concentration (100 µg GAE/mL). No S. aureus growth-promoting effect was observed for any of the strains. Figures show mean values of two independent experiments with error bars representing standard deviations. p-values are shown with an asterisk (* p < 0.05, ** p < 0.01, or *** p < 0.001) for comparing different dosages of EBCE with those of its own control.
Figure 1. Effect of different EBCE concentrations on the growth of clinical S. aureus strains. Input was ~104 CFU for each S. aureus SA-DUS strain, and bacterial growth was calculated from OD600 values compared to the control sample of each strain without EBCE supplementation (0 µg GAE/mL). A strong reduction growth is seen at the highest EBCE concentration (100 µg GAE/mL). No S. aureus growth-promoting effect was observed for any of the strains. Figures show mean values of two independent experiments with error bars representing standard deviations. p-values are shown with an asterisk (* p < 0.05, ** p < 0.01, or *** p < 0.001) for comparing different dosages of EBCE with those of its own control.
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Figure 2. Representative photographs of CoNS (pink) and CoPS (yellow) colonies in a serially diluted (a) control sample without EBCE, (b) a sample supplemented with 3.8 µg GAE/cm2 of EBCE, and (c) a sample supplemented with 76.0 µg GAE/cm2 of EBCE. These pictures illustrate respectively how S. aureus AD-DUS-017 is outgrowing S. epidermidis DSM 20044 in the control sample, how S. epidermidis DSM 20044 is outgrowing S. aureus SA-DUS-017 in a sample with the low EBCE concentration, and how both strains are completely inhibited in the sample with the high EBCE concentration. Samples represent microbial growth of viable colonies extracted from the stratum corneum model that was inoculated with ~104 CFU of both strains.
Figure 2. Representative photographs of CoNS (pink) and CoPS (yellow) colonies in a serially diluted (a) control sample without EBCE, (b) a sample supplemented with 3.8 µg GAE/cm2 of EBCE, and (c) a sample supplemented with 76.0 µg GAE/cm2 of EBCE. These pictures illustrate respectively how S. aureus AD-DUS-017 is outgrowing S. epidermidis DSM 20044 in the control sample, how S. epidermidis DSM 20044 is outgrowing S. aureus SA-DUS-017 in a sample with the low EBCE concentration, and how both strains are completely inhibited in the sample with the high EBCE concentration. Samples represent microbial growth of viable colonies extracted from the stratum corneum model that was inoculated with ~104 CFU of both strains.
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Figure 3. Effect of different EBCE concentrations on the growth of S. aureus SA-DUS-017 and S. epidermidis DSM 20044 grown together on the in vitro stratum corneum model. Results represent microbial growth of viable colonies extracted from the stratum corneum model inoculated with ~104 CFU of both strains. (a) the CFU values of both individual strains, and (b) the S. epidermidis/S. aureus ratio calculated from the mean CFU values of the individual strains (log-scale). Figures show the mean values of two independent experiments with error bars representing standard deviations. p-values are shown with an asterisk: * p < 0.05, ** p < 0.01, or *** p < 0.001.
Figure 3. Effect of different EBCE concentrations on the growth of S. aureus SA-DUS-017 and S. epidermidis DSM 20044 grown together on the in vitro stratum corneum model. Results represent microbial growth of viable colonies extracted from the stratum corneum model inoculated with ~104 CFU of both strains. (a) the CFU values of both individual strains, and (b) the S. epidermidis/S. aureus ratio calculated from the mean CFU values of the individual strains (log-scale). Figures show the mean values of two independent experiments with error bars representing standard deviations. p-values are shown with an asterisk: * p < 0.05, ** p < 0.01, or *** p < 0.001.
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Figure 4. Representative photographs of CoNS (pink) and CoPS (yellow) colonies in (a) a serially diluted control sample without EBCE and (b) a sample supplemented with 3.8 µg GAE/cm2 of EBCE. These pictures illustrate how S. aureus SA-DUS-017 is outgrowing CoNS in the control sample, and CoNS are outgrowing S. aureus SA-DUS-017 in the sample with EBCE. Samples represent the growth of viable colonies extracted from the stratum corneum model inoculated with ~103 CFU of S. aureus SA-DUS-017 and ~104 CFU of aerobic bacteria from the armpits of seven healthy volunteers.
Figure 4. Representative photographs of CoNS (pink) and CoPS (yellow) colonies in (a) a serially diluted control sample without EBCE and (b) a sample supplemented with 3.8 µg GAE/cm2 of EBCE. These pictures illustrate how S. aureus SA-DUS-017 is outgrowing CoNS in the control sample, and CoNS are outgrowing S. aureus SA-DUS-017 in the sample with EBCE. Samples represent the growth of viable colonies extracted from the stratum corneum model inoculated with ~103 CFU of S. aureus SA-DUS-017 and ~104 CFU of aerobic bacteria from the armpits of seven healthy volunteers.
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Figure 5. The effect of two different EBCE concentrations on the growth of S. aureus SA-DUS-017 and CoNS bacteria from the skin of healthy volunteers grown together for 24 h on the in vitro stratum corneum model. Results are representing microbial growth of viable colonies extracted from the stratum corneum model inoculated with ~103 CFU of S. aureus SA-DUS-017 and ~104 CFU of aerobic bacteria from the armpits of seven healthy volunteers. (a) CFU of CoNS and S. aureus SA-DUS-017 and (b) CoNS/S. aureus SA-DUS-017 ratio calculated from mean values of CFU number. Figures are showing mean values of two independent experiments with error bars, which represent standard deviations. p-values are shown with an asterisk: * p < 0.05 or *** p < 0.001.
Figure 5. The effect of two different EBCE concentrations on the growth of S. aureus SA-DUS-017 and CoNS bacteria from the skin of healthy volunteers grown together for 24 h on the in vitro stratum corneum model. Results are representing microbial growth of viable colonies extracted from the stratum corneum model inoculated with ~103 CFU of S. aureus SA-DUS-017 and ~104 CFU of aerobic bacteria from the armpits of seven healthy volunteers. (a) CFU of CoNS and S. aureus SA-DUS-017 and (b) CoNS/S. aureus SA-DUS-017 ratio calculated from mean values of CFU number. Figures are showing mean values of two independent experiments with error bars, which represent standard deviations. p-values are shown with an asterisk: * p < 0.05 or *** p < 0.001.
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Table 1. Polyphenolic profile of enzymatically derived blackcurrant extract.
Table 1. Polyphenolic profile of enzymatically derived blackcurrant extract.
CompoundRetention
Time
(min)
Ionisation ModeTransitionFV (V)CE (V)Concentration in EBCE (µg/mL)
Gallic acid1.65Negative169 ⟶ 125100102.22 ± 0.02
Protocatechuic acid3.38Negative153 ⟶ 10910091.58 ± 0.03
p-Hydroxybenzoic acid4.80Negative137 ⟶ 93100101.17 ± 0.02
Catechin5.05Negative289 ⟶ 245100100.32 ± 0.02
Caffeic acid5.32Negative179 ⟶ 135100101.71 ± 0.05
Vanillic acid5.50Negative167 ⟶ 108100150.11 ± 0.06
Syringic acid5.92Negative197 ⟶ 18210012<0.01
Epicatechin6.00Negative289 ⟶ 245104100.10 ± 0.02
Malvidin-3-glucoside6.20Positive493.1 ⟶ 331.1116241.62 ± 0.46
p-Coumaric acid6.60Negative163 ⟶ 11910097.27 ± 0.51
Taxifolin6.82Negative302.7 ⟶ 284.8100140.26 ± 0.03
t-Ferulic acid6.90Negative193 ⟶ 134100110.59 ± 0.06
Salicylic acid7.40Negative137 ⟶ 93100100.11± 0.08
Resveratrol7.41Negative227 ⟶ 185100200.05 ± 0.03
Rutin7.70Negative609 ⟶ 3001004212.42 ± 0.28
Ellagic acid7.90Negative301 ⟶ 257100350.07 ± 0.03
Myricetin8.10Negative316.7 ⟶ 150.9100268.74 ± 1.69
Naringenin8.74Negative271 ⟶ 151100160.06 ± 0.01
Quercetin8.80Negative301 ⟶ 179100151.84 ± 0.08
Kaempferol9.40Negative285 ⟶ 93.4100520.35 ± 0.07
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MDPI and ACS Style

Ćorović, M.; Petrov Ivanković, A.; Milivojević, A.; Pfeffer, K.; Homey, B.; Jansen, P.A.M.; Zeeuwen, P.L.J.M.; van den Bogaard, E.H.; Bezbradica, D. Investigating the Effect of Enzymatically-Derived Blackcurrant Extract on Skin Staphylococci Using an In Vitro Human Stratum Corneum Model. Pharmaceutics 2025, 17, 487. https://doi.org/10.3390/pharmaceutics17040487

AMA Style

Ćorović M, Petrov Ivanković A, Milivojević A, Pfeffer K, Homey B, Jansen PAM, Zeeuwen PLJM, van den Bogaard EH, Bezbradica D. Investigating the Effect of Enzymatically-Derived Blackcurrant Extract on Skin Staphylococci Using an In Vitro Human Stratum Corneum Model. Pharmaceutics. 2025; 17(4):487. https://doi.org/10.3390/pharmaceutics17040487

Chicago/Turabian Style

Ćorović, Marija, Anja Petrov Ivanković, Ana Milivojević, Klaus Pfeffer, Bernhard Homey, Patrick A. M. Jansen, Patrick L. J. M. Zeeuwen, Ellen H. van den Bogaard, and Dejan Bezbradica. 2025. "Investigating the Effect of Enzymatically-Derived Blackcurrant Extract on Skin Staphylococci Using an In Vitro Human Stratum Corneum Model" Pharmaceutics 17, no. 4: 487. https://doi.org/10.3390/pharmaceutics17040487

APA Style

Ćorović, M., Petrov Ivanković, A., Milivojević, A., Pfeffer, K., Homey, B., Jansen, P. A. M., Zeeuwen, P. L. J. M., van den Bogaard, E. H., & Bezbradica, D. (2025). Investigating the Effect of Enzymatically-Derived Blackcurrant Extract on Skin Staphylococci Using an In Vitro Human Stratum Corneum Model. Pharmaceutics, 17(4), 487. https://doi.org/10.3390/pharmaceutics17040487

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