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Article

X-ray Diffraction, Spectroscopy, Optical Properties, NPA, NBO, FMO, and Hirshfeld Surface Analyses of Two Newly Synthesized Piperidinium Ionic Liquids

1
Department of Theoretical and Applied Chemistry, South Ural State University, Lenin Prospect 76, Chelyabinsk 454080, Russia
2
Chemistry and Environmental Division, Manchester Metropolitan University, Manchester M1 5GD, UK
3
Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
4
Chemistry Department, Faculty of Science, Assiut University, Assiut 71516, Egypt
5
Department of Chemistry, Tulane University, New Orleans, LA 70118, USA
6
Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
*
Authors to whom correspondence should be addressed.
Crystals 2023, 13(11), 1583; https://doi.org/10.3390/cryst13111583
Submission received: 24 September 2023 / Revised: 2 November 2023 / Accepted: 9 November 2023 / Published: 14 November 2023

Abstract

:
The present study elaborates on the synthesis, crystal structure, and computational studies of two new ionic liquids. In the crystal structure, [C5H12N][C21H14ClN2O2S] (4a), the anions form chains along the a-axis direction through C—H···π(ring) interactions. These are connected into layers that run approximately parallel to the ac plane by a variety of hydrogen bonds. In the compound structure, [C5H12N][C18H15N2O2S] (4b), the two ions are primarily associated by an N—H···N hydrogen bond. In the crystal structure, layers parallel to the bc plane are formed by pairs of C—H···O and N—H···S hydrogen bonds and by C—H···π(ring) interactions. A theoretical study reveals that 4a has lower energy than 4b and is more stable. The NBO and DOS studies further confine the liquids’ structural reactivity and electronic properties. The quantum theory of atoms in a molecule (QTAIM) analysis reveals the important non-covalent interactions among the fragments and charge transfer. The global reactivity descriptors indicate their molecular reactivity relationship with the presence of functional groups. The remarkable polarizability (αo) and hyperpolarizability (βo) values indicate their optical and nonlinear optical (NLO) properties. Furthermore, the analysis performed by CrystalExplorer shows the intermolecular interactions and reactive sites between cations and anions in ionic liquids. The 2D fingerprint plots and Hirshfeld surfaces indicate the major interactions of crystals with neighboring elements in crystal packing. For both compounds, the H···H interactions are significantly higher than the other element interactions.

1. Introduction

Given the abundance of pyridine and its derivatives in nature and the significance of niacin for the treatment of dementia and dermatitis, pyridine and its targets became intriguing in 1930 [1]. Functionally substituted pyridines are bioactive small molecules that possess a wide range of biological activities and therapeutic uses [2,3,4], and many of them are now used in clinical settings [5]. For example, Actos, which is a drug that is widely used as an anti-diabetic agent, and vitamins such as B6 which play key roles in metabolism are pyridine-based structures [6,7]. In particular, it was discovered that substituted cyanopyridines have antipyretic, anti-inflammatory, and analgesic properties [8] as well as antihypertensive [9], antimicrobial [10], cardiotonic [11], and anticancer activities [12,13]. Among the successful examples of drug candidates possessing the pyridine core are streptonigrone, lavendamycin, and streptonigrin, which are depicted in the literature as anticancer agents [14].
Moreover, thieno-pyridine derivatives have been included in several medicinal preparations including antiviral [15], antihypertensive [16], antimicrobial [17], and anti-inflammatory [18] agents. In addition, pyrimidines act as antipyretic [19,20], antimicrobial [21], antiallergic [22,23], anti-anaphylactic [24,25], anticancer [26,27,28], and antiprotozoal agents [29].
On other hand, the literature showed that ionic liquids in general play an important role in industrial and biological applications [30]. Ionic liquids are considered as good molecular solvents compared to the commonly used volatile organic solvents [31]. They also could serve as clean and green solvents in pharmaceutical industries due to their broad range of polarities and their combinations of cations (particularly organic) and anions which could ease the solubility of an extensive range of drugs [32]. They also possess a very low viscosity, low vapor pressure or non-volatility under ambient conditions, tuneable solubility, acidity, basicity, long range thermal stability, and very low corrosivity relative to mineral acids and bases, etc. [33]. They also have no side effects on atmospheric photo-chemistry [34]. Moreover, the non-volatile nature of most ionic liquids also causes them to be non-flammable under ambient conditions, which includes low-boiling solvents such as petroleum ether, dichloromethane, acetone, and many more [35]. Because of their unique properties, the synthesis of ionic liquids becomes so important for various interests such as electro-chemists, analysts, biologists, engineers, physical chemists, and many more types of chemists. However, their synthesis and purification require standard synthesis methods to certify their consistent reproducibility. Piperidinium-based ionic liquids in particular have been used as effective catalysts in biomass conversion [36].
With these facts in mind, we decided to study two piperidinum ionic liquid derivatives of cyanopyridine thiones.
DFT-based investigations play a vital role in determining the reactivity and structural properties of new compounds. Non-covalent interactions, charge transfer, and π-conjugation have made organic molecules interesting moieties for studying electronic and optical properties. In our current study, we have employed DFT and Hirshfeld analyses to understand the structural reactivity and crystal properties of our liquid crystals, in particular their nonlinear optical (NLO) properties.

2. Experimental

2.1. Materials and Methods

All the chemicals and solvents used in the synthesis and spectroscopic experiments are commercially available and utilized as such. The melting points were determined using a Gallenkamp instrument (Assiut University, Assiiut, Egypt) and are uncorrected. A PerkinElmer 2400 LS Series CHN/O analyzer was used for elemental analyses (C, H, and N) (Universiti Sains 48 Malaysia, Minden, Malaysia). Ethyl 3-oxobutanoate (1a), ethyl 3-oxo-3-phenylpropanoate (1b), and the appropriate used aldehydes and solvents were purchased from Sigma-Aldrich chemicals. The arylidines (2a,b) had been prepared in our lab by refluxing the appropriate aldehyde with the corresponding 2-cyanoethanethioamide in ethanol for the interval time.
The reactions in this study were monitored with TLC (thin-layer chromatography) on Merck alumina-backed TLC plates Pf254 using UV light. FTIR spectra were collected with a Pye-Unicam SP3-100 spectrophotometer using the KBr disc technique (vmax, in cm−1) (Assiut University, Assiut, Egypt). NMR spectra were measured on a Bruker spectrometer (at 400 MHz for 1H NMR and 101 MHz for 13C NMR) in CDCl3 solutions (except for 2b, which was in DMSO-d6), with chemical shifts reported in (ppm) and coupling constants (J values) given in Hz (Sohag University, Sohag, Egypt).

2.2. Synthesis

2.2.1. Synthesis of Piperidinium [4-(4-chlorophenyl)-3-cyano-5-(ethoxycarbonyl)-6-phenylpyridin-2-yl]sulfanide (Scheme 1; 4a)

A mixture of 4-(4-chlorophenyl)-3-cyano-5-ethoxcarbonyl-6-phenylpyridine-2(1H)-thione, 3a, (10 mmol) and piperidine (15 mmol) in ethanol (35 mL) was heated under reflux for 15 min and then allowed to cool. The crystalline solid that formed was collected using filtration, air-dried, and recrystallized from ethanol to give one spot product on the TLC plate under UV light (99.9% purity) orange needles of 4a; Yield: 80%. m. p. 219–221 °C. FTIR (ν) (KBr), cm−1: 3420, 2480, 2400 (N+H2), 2952 (C-H, aliphatic), 2215 (C≡N), 1726 (C=O). 1H NMR (CDCl3): δ 7.20–7.33 (m, 11H, N+H2 and Ar-H), 3.70–3.71 (q, 2H, OCH2), 2.86 (t, 4H, CH2N+CH2), 1.35–1.37 (m, 4H, 2CH2), 1.18 (m, 2H, CH2), 0.69 (t, 3H, CH3). Anal. Calcd. for C26H26ClN3O2S (%): C, 65.06; H, 5.46; N, 8.75; S, 6.68. Found (%): C, 64.78; H, 5.22; N, 8.51; S, 6.92.
Scheme 1. Synthesis of (4a,b).
Scheme 1. Synthesis of (4a,b).
Crystals 13 01583 sch001

2.2.2. Synthesis of Piperidinium [3-cyano-5-(ethoxycarbonyl)-6-methyl-4-[(E)-2-phenylethenyl]pyridin-2-yl]sulfanide (Scheme 1; 4b)

A mixture of 3-cyano-5-ethoxcarbonyl-6-methyl-4-styryl-pyridine-2(1H)-thione, 3b, (3.24 g, 10 mmol) and piperidine (10 mmol) in ethanol (25 mL) was heated under reflux for 15 min and then allowed to cool. The crystalline solid that formed was collected using filtration, air-dried, and recrystallized from ethanol to give absolute pure spot in TLC plate under UV light (100% purity) yellow needles of 4b; yield: 3.76 g (92 %); m.p: 241–243 °C. Its FTIR spectrum showed characteristic absorption bands at 3430, 2508, 2410 cm−1 for (N+H2), 2948, 2755 cm−1 for (C-H, aliphatic), 2211 cm−1 for (C≡N), and 1728 cm−1 for (C=O) (see the supplementary materials). Its 1H NMR spectrum (CDCl3) displayed a broad singlet at δ 8.61 (2H, NH2), a multiplet at δ 7.10–7.49 (m, 7H: CH=CH and Ar-H’s), a quartet at δ 4.27–4.32 (2H, OCH2), a triplet at δ 3.23–3.25 (4H, CH2NCH2), a singlet at δ 2.41 (3H, CH3), a pentet at δ 1.81–1.86 (4H, CH2-C-CH2), a triplet at δ 1.64–1.66 (2H, C-C-CH2-C-C), and a triplet at δ 1.25–1.28 (3H, CH3 of ester group) ppm (see the supplementary materials). Its 13C NMR spectrum (CDCl3) showed the following peaks: δ 180.30, 168.42, 156.37, 147.17, 137.99, 135.91, 129.08, 128.77, 127.19, 122.64, 119.33, 119.29, 108.30, 61.59, 44.87, 23.35, 23.02, 22.52, and 14.16 ppm. Anal. Calcd. for C23H27N3O2S (409.09): C, 67.45; H, 6.65; N, 10.26; S, 7.83%. Found: C, 67.20; H, 6.61; N, 10.51; S, 7.54% (see the supplementary materials).

2.3. Crystal Structure Measurement

Suitable crystals of 3a and 3b were put on polymer loops with a drop of heavy oil and placed in a stream of cold nitrogen on a Bruker Smart APEX CCD diffractometer (Bruker AXS Inc., Madison, Wisconsin, USA) equipped with a fine-focus sealed tube (MoKα, λ = 0.71073 Å) and a graphite monochromator. The APEX3 software [37] was used to collect the intensity data, and SAINT [37] was used to convert the raw intensities to F2 values. SADABS [38] was used to apply numerical absorption corrections and merge the equivalent reflections. The structures were solved using dual space methods (SHELXT [38]) and refined by full-matrix, least-squares methods (SHELXL [39]). All hydrogen atoms were located in different maps and were refined independently except for those attached to C18 in 4b, which were included as riding contributions in idealized positions. For 4a, the C alert is the result of some minor disorder of that methyl group which causes an apparent large displacement parameter. The disorder, however, is not large enough to be refined with a split-atom model. For 4b, although the ratio of Maximum/Minimum Residual Density is 2.19, the actual values are 0.490 and −0.224 e-Å–3, which are no more than half a hydrogen atom and so are not considered significant. The Hirshfeld test on the S1—C1 bond is likely due to S1 being a terminal atom and relatively unconstrained in its vibrational motion along the S1—C1 bond, while C1 is part of the six-membered ring and so is much more constrained in its vibrational motions. The “missing reflections” (only four) are inaccessible with the diffractometer used or are obscured by either the beam stop or the nozzle of the low-temperature unit. Table 1 provides crystallographic details.

2.4. Computational Details

The applicability of the density functional theory (DFT) for defining and understanding crucial chemical ideas of molecular structure and reactivity is one of its most relevant features [40]. Here, density functional theory (DFT) is used to theoretically investigate 4a and 4b using the Gaussian 09 program [41] with GaussView 5.0 being used to display the resulting geometries [42]. All calculations were run at the B3LYP functional level using the split valence double zeta basis set 6-31+G(d,p). For organic molecules, the B3LYP method is reliable for determining long-range, non-covalent interactions and has a hybrid function. After the geometries were optimized, frequency calculations were performed to ensure the stability of the resulting structures. Additionally, we calculated the ionization potential and electron affinity of 4a and 4b to assess their electronic stability and reactivity and used frontier molecular orbital theory (FMOs) and NBO charge analysis to obtain more specific details.
To determine the conductivity and reactivity of the compounds, we conducted density of states (DOS) studies and estimated their optical and nonlinear optical characteristics using the same theoretical approach which provided values for the dipole moments (µo), polarizability (αo), hyperpolarizability (βo), and the projection of the hyperpolarizability on the dipole moment vector. Additionally, we performed 3D Hirshfeld surface analyses, including fingerprint plots of 4a and 4b, to visualize intermolecular interactions in the crystals using CrystalExplorer 21.5 [43].

3. Results and Discussion

3.1. X-ray Diffraction Studies

3.1.1. Crystal Structure of 4a

The phenyl and 4-chlorophenyl rings are inclined to the central pyridine ring by 49.98(4)° and 62.34(4)°, respectively (Figure 1). In the crystal, the anions form chains extending along the a-axis direction through inversion-related C13—H13A···Cg2 interactions (Table 2 and Figure 2) between the ethoxycarbonyl substituents and the phenyl substituents on neighboring units. These are constructed into layers that are approximately parallel to the ac plane and two anions thick by intervening sets of cations through N3—H3A···S1 and N3—H3B···S1 hydrogen bonds assisted by C25—H25A···O2, C25—H25B···S1, C19—H19···O1 and C22—H22B···N2 hydrogen bonds (Table 2 and Figure 2 and Figure 3).

3.1.2. Crystal Structure of 4b

The dihedral angle between the N1/C1···C5 and C9···C14 rings is 48.62(5)°, while the piperidinium cation adopts a chair conformation (Figure 4). In the crystal, two formula units form inversion dimers through N3—H3B···N1 and N3—H3A···S1 hydrogen bonds (Table 3 and Figure 5). The dimers are connected into zigzag chains extending along the c-axis direction by inversion-related C19—H19B···O1 and C23—H23B···O1 hydrogen bonds as well as C21—H21B···Cg2 interactions (Table 3 and Figure 5). Finally, the chains are connected into layers that are parallel to the bc plane by inversion-related C14—H14···Cg1 interactions (Table 3 and Figure 5 and Figure 6).

3.2. Optimized Geometries and Stability of Ionic Liquids

The optimized geometries of ionic liquids (4a and 4b) are given in Figure 7. Initially, we obtained the geometries at the B3LYP/6-31+g(d,p) functional without any geometry constraints. The compounds have C1 point group symmetry with non-planar geometries. The geometries obtained are real minima on the potential energy surface and have no negative (imaginary) frequencies associated with them. Thus, the structures are said to be stable with 4a having a total electronic energy of −2179.57 Hartree, while −1605.68 Hartree is calculated for 4b, showing that 4a is more stable than 4b (Table 4). For 4a, the dipole moment µo was calculated to be 22.92 Debye, but for 4b, it was only 9.46 Debye. The high dipole moment for 4a can be attributed to the large charge separation within it, which is possibly due to the presence of the electronegative Cl-atom in the para-position. The asymmetric charge distribution and non-zero dipole moments exhibit intriguing electronic features and can be examined further for optical properties.

3.3. FMOS Analysis and NBO Charge Study

To examine the reactivity and kinetic stability of organic compounds, frontier molecular orbital (FMO) analysis is a vital quantum chemical tool. Additionally, FMO theory plays a vital role in the interpretation of stereo- and regioselectivities of compounds. The lowest unoccupied molecular orbital (LUMO) and the highest occupied molecular orbital (HOMO) are included in the FMOs, as well as their band gaps (EH-L). The calculated values of HOMO, LUMO, and their HOMO-LUMO gaps (EH-L) are given in Table 5, and the pictorial representation of the HOMO and LUMO densities is shown in Figure 8. The calculated HOMO energy values are −4.51 and −5.35 eV for 4a and 4b, respectively, with HOMO-LUMO gaps of 2.78 and 3.39 eV, respectively. The relatively low EH-L gaps indicate the reactivity toward incoming moieties and the soft nature of 4a and 4b. The plotted densities of occupied and virtual orbitals are given in Figure 8.
The natural bonding molecular orbital (NBO) charges for 4a on nitrogen Q(N), oxygen Q(O), and sulfur Q(S) are −0.67, −0.71, and −0.15 |e|, respectively (Table 5). The highest NBO charge (negative) is found for carbon attached to oxygen in the central ring. The more negative charge indicates that the oxygen atom pulls the electrons to its p-orbitals from the carbon atom due to its high electronegativity. All the oxygen and nitrogen atoms have negative NBO charges, indicating their donor abilities in ionic liquid crystals. In 4a, the cationic part (C5H12N) interacts through the oxygen atom of the anionic part of the compound. There is a more significant charge transfer (+0.50) from the hydrogen of cation to the oxygen of anion than those of 4b. The anionic oxygen atom acts as a donor and has a significant negative NBO charge (−0.71|e|). In 4b, the hydrogen atom (attached to the cation) gets less partial positive charge (+0.42) after its interaction with the nitrogen of the anionic part. In 4b, the nitrogen atom of the anionic part also bears less partial negative charge as compared to 4a. Also, the N and S atoms’ decreased NBO (negative) charges match their reduced electronegativity as compared with oxygen. Likewise, compound 4b has the highest negative charge, up to −0.72, as can be seen on the nitrogen of the cationic part, while the charge on Sulphur Q(N) is −0.27 |e|. The entire hydrogen atoms attached to carbon atoms of 4a and 4b show positive NBO charges which indicate the transfer of charge from the s-orbital of hydrogen to p-of carbon-atom.
The quantum theory of atoms in a molecule (QTAIM) study reveals the nature of bonding and the surface topology of titled compounds 4a and 4b. The electron density and QTAIM parameters were calculated for (+3; −1), and the bond critical point is also given in Table 6. We have focused more on the interaction pattern and the nature of cationic moiety (C5H12N) with the anionic part in these ionic liquids. The geometries labeled with bond critical points are depicted in Figure 9, while the values are given in Table 6. To attain a better insight into the nature of the hydrogen bond interactions between the dictations and anions of each DIL, the quantum theory of atoms in molecules (QTAIM) can be analyzed. In this theory, the values of electronic density ρ(r) and its Laplacian ∇2ρ(r) are used to analyze the topology for classification of bonding interactions in a molecular system. The smaller value of ρ(r) < 0.1 au) shows weak van der Waals interactions. For 4a, the value of ρ(r) is smaller than 0.1 au but has a higher value for the critical point (CP) 136. The above CP (36) corresponds to the interactions between the bonded atoms, which are strongly covalent in nature. Strikingly, all the CP for the interaction of the cationic ring (C5H12N) with molecules are suggesting the non-covalent nature of the bonding. From the laplacian density (∇2ρ) and total energy density (H), which is positive, the interactions can be said to be non-covalent for the cationic ring.
Similarly, for 4b, the CP (71) appeared to be between C2 and S1 and shows a higher value of total electron density ρ(r) as compared to other CPs. Hence, the S-atom has a strong interaction and a covalent nature of bonding with Carbon-2 as indicated by its electron density and negative value of ∇2ρ(r). The comparison of QTAIM can be constructed with NBO charges on titled compounds. In 4a, the negative NBO charges were seen for the nitrogen of C5H12N ring oxygen atoms in the anionic part. The interaction of H48-atoms of C5H12N-ring with the neighbor O15-atom induces a significant negative charge on it, while hydrogen gets the maximum positive charge. Evidence of a strong interaction can be seen from QTAIM, where ρ(r) was recorded up to 0.066432 au, suggesting strong non-covalent interactions. Likewise, the interaction of other atoms also agreed with the computed NBO charges for the cationic ring and the anionic part. For the 4b, the C5H12N interacted strongly with the nitrogen and S-atom of the anionic part. The computed negative NBO charges were recorded on nitrogen atoms and sulfur. The charge transfer from the hydrogen H45/H46 of C5H12N-ring to the S-atom may have a strong correlation with the QTAIM study. The significant ρ(r) values are suggesting that a strong non-covalent interaction exists in 4b.

3.4. Molecular Electrostatic Potential (MEP)

The MEP is a helpful computational tool for studying reactivity, because an approaching electrophile will be pulled to negative regions (the electron distribution where the effect is dominant). In the majority of MEPs, the maximum positive region indicating the location for the nucleophilic attack is indicated in blue, whereas the maximum negative region indicating the site for the electrophilic attack is shown in red. The significance of the molecular electrostatic potential (MEP) is that it simultaneously displays the molecular size and shape as well as the positive, negative, and neutral electrostatic potential (MEP) of the compound. The pictorial representations of the MEPs are given in Figure 8. For 4a, the higher electron density is located around the sulfur and the nitrile nitrogen atoms (red color) of the anion, which favors an incoming electrophile approaching these sites. The region has a low electron density and is located around the cation, which therefore is the region for nucleophilic attack. A similar electron density pattern can be seen for 4b.

3.5. Electronic Properties and Global Reactivity of 4a and 4b

Chemical reactivity is the study of a molecule’s response to an incoming attack by a nucleophile or an electrophile. We estimated the global reactivity descriptors, including ionization potential (IP), electron affinity (EA), chemical hardness (Ƞ), chemical potential (µ), and electronegativity (χ), to better understand the reactivity and structural features, using the following equations:
Ionization potential (IP) = − E (HOMO)
Electron affinity (EA) = −E (LUMO)
Ƞ = 1 2 2 E N 2 2 E N 2 V ( r ) = 1 2 ( E N ) V ( r )
Chemical Hardness (η) = ½ (IP − EA)
µ = χ = ( E N ) V ( r )
Chemical   potential   ( µ ) = I P + E A 2
Electronegativity (χ) = −µ
Electrophilicity   index   ( ω ) = µ 2 2 η
The ionization potential and electron affinity were calculated using Koopmans approximations in which the negative of the HOMO energy is the IP and the negative of the LUMO energy is the EA. The IP for 4a is 4.51 eV, while for 4b it is somewhat larger (5.35 eV, see Table 6), making 4a electropositive. Similarly, the electron affinities (EA) of 4a and 4b are, respectively, 1.72 and 1.95 eV. The higher EA value for 4b indicates its better electron-accepting tendency as compared to that of 4a. Chemical systems’ behavior toward reactivity and stability can be evaluated using the principle of chemical hardness. It determines how a chemical species offers resistance to change in its electronic configuration. The higher the chemical hardness, the more stable and less reactive the compound (vide supra). The calculated value of Ƞ for 4a is 1.39 eV, while that of 4b is slightly larger at 1.73 eV. Therefore, 4a has a softer nature which is more reactive in fragmentation as compared to the nature of 4b, as shown by the computed HOMO-LUMO gaps. Similarly, the calculated values of electronegativity (χ) for 4a and 4b are 3.11 and 3.65 eV, with 4b being more electronegative than 4a.
The electrophilicity index (ω) is a gauge of energy loss brought on by the greatest possible electron flow between the donor and acceptor. The calculated ω values describe the biological activity of the compounds and are further used to understand the toxicity of pollutants based on reactivity and site selectivity. The values of ω are 3.47 and 3.89 eV, where 4a has a slightly smaller value as compared to 4b. The significant values of the electrophilicity index indicate the strong electrophilic nature of the two compounds.

3.6. Total Density of States (TDOS) Analysis

To understand the electronic and optical properties of 4a and 4b, we considered the density of states analysis at the same theoretical level as used earlier, and the spectra are depicted in Figure 10. The TDOS spectra are plotted between the energy range of −21 to 5.44 eV, where the dotted line shows the energy of the highest occupied molecular orbital (HOMO). For 4a, the new HOMO states appear at high energy, which results in a significant reduction in the HOMO-LUMO gap. Due to the reduced band gap (EH-L), the electron transport becomes easier from HOMO to LUMO, and electrical properties can be triggered. Thus, 4a has notable electrical properties as compared to 4b. The higher densities of occupied molecular orbitals and reduced LUMO densities are favorable for classifying 4a as a good candidate for optical applications.

3.7. Optical and Nonlinear Optical (NLO) Properties

Nonlinear optical (NLO) materials have generated considerable interest due to their widespread applications in data storage devices, optical switching, optical switches, and laser-based endoscopy. Because organic non-linear optical materials are comprised of conjugated molecules, which allow π-electrons to travel freely between the donor and acceptor groups to facilitate charge transfer, they are more efficient by several orders of magnitude and have fast response times as compared to inorganic materials. In compounds, there is a role of non-covalent interaction to structural reactivity and significant charge transfer. In our synthesized ionic liquids, the large dipole moments (µo) and asymmetric NBO charge distributions prompted us to further investigate their NLO properties. Nonlinear optical (NLO) properties are induced by asymmetric charge distribution as well as electronic density that is generated under strong electrical perturbation of light. The energy of the perturbed system is described by the Taylor expansion.
E = E o μ I F i 1 2 ! α i j F i F j 1 3 ! β i j k F i F j F k [ 1 4 ! ] γ i j k l F i F j F k F l
Eo is the molecular energy in the absence of the applied electric field; i is the permanent dipole moment along the i direction; Fi is the cartesian component of the applied electric field along the i direction; ij, ijk, and ijkl are the polarizability, first, and second hyperpolarizability tensors, respectively; and i, j, and k are the different components along the x, y, and z directions. The following connection gives the polarizability (αo) and static hyperpolarizability (βo):
α o = 1 3 ( α x x + α y y + α z z )
β o = ( β 2 x + β 2 Y + β 2 Z )
The computed values of polarizability (αo), average polarizability volume (αv), and hyperpolarizability (βo) are given in Table 4. The obtained values of the polarizabilities for 4a and 4b are 402.47 and 368.105 au. The αo value for 4a is noticeably larger than that for 4b, reflecting a larger degree of polarization and asymmetric charge distribution within its structure. The αo corresponds to the linear response of materials after their interactions with light. The average polarizability volume for 4a is 59.64 Å3, while for 4b it is slightly reduced to 54.54 Å3. The computed hyperpolarizability for 4a is 2400.72 au, while for 4b it is 2722.63 au. Overall, the βo values for both compounds are noteworthy and are indicate that they are potential candidates for nonlinear optical (NLO) response. The presence of π-conjugation in the anion parts of the compounds might be responsible for triggering NLO values. On the other hand, the presence of non-covalent interactions is also a key factor in boosting the hyperpolarizability values. Hence, the studied ionic liquids are potential candidates for fabricating optoelectronic materials based on their NLO properties.

3.8. Hirschfeld Surface Analysis

CrystalExplorer 17.5 was used for the Hirshfeld surface analysis and the associated two-dimensional fingerprint plots with the experimental atom coordinate as the starting point. The Hirshfeld surfaces of 4a and 4b mapped over dnorm and di are given in Figure 7. A full explanation of these parameters and the interpretation of the plots generated by CrystalExplorer has been published [38]. In 4a, there are dark red spots adjacent to the C≡N nitrogen and the Cl atoms in the anion, while a fainter red spot appears adjacent to the S atom. An additional dark red spot appears adjacent to an N–H of the cation. These red spots on the dnorm surface indicate strong intermolecular interactions, and this is consistent with the intermolecular hydrogen bonding listed in Table 7. Similar comments can be made about the dnorm plot for 4b. The obtained values of the Hirshfeld surface parameters are given in Table 6.
The 2D fingerprint plots (Figure 11) provide information about the types of intermolecular contacts between the atoms and the fractions of their interactions. For the two compounds, the highest van der Waals interaction can be seen between the hydrogen atoms in adjacent fragments and constitute 44.1 and 48% of the total intermolecular interactions for 4a and 4b, respectively. The percentage of each internal atom to outside atom contact is given in Table 8. For 4a, the total volume of the surface is 593.50 Å3, the area is 489.87 Å2, the globularity is 0.69, and the asphericity is 0.14. For 4b, the calculated total volume is 523.90 Å3, the area is 464.23 Å2, and the asphericity is 0.676. These values indicate that the compounds deviate from perfect spherical shapes.

4. Conclusions

To sum up, we have synthesized two new ionic liquids, and their structures were confirmed using single-crystal X-ray analysis. A DFT investigation using the B3LYP method was carried out to understand the reactivity, optical properties, and nonlinear optical (NLO) properties. The FMO analysis reveals the softer nature of 4a as compared to 4b and hence demonstrated its superior reactivity. The HOMO-LUMO gap is 2.78 eV for 4a and is less than that of 4b. The NBO study shows the donor properties for the negatively charged oxygen and nitrogen atoms attached to 4a and 4b. The global reactivity parameters also indicate their reactivity and optical properties. Nonlinear optical (NLO) properties are indicated by their large polarizability (αo) and hyperpolarizability (βo) values. The QTAIM study reveals the role of non-covalent interactions in reactivity between the anionic and cationic fragments. The Hirshfeld surface analysis of the two compounds reveals their intermolecular interactions and reactive sites. The Hirshfeld surfaces and 2D fingerprint plots show important interactions between the anionic fragment and its immediate surroundings. The H···H interactions are much more numerous than those between any other elements in both compounds.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/cryst13111583/s1. Figure S1: IR spectrum of 4a; Figure S2: 1H NMR spectra of 4a; Figure S3: 13C NMR spectra of 4a; Figure S4: IR spectrum of 4b; Figure S5: 1H NMR spectra of 4b; Figure S6: Labeled geometry of compound 4a and 4b; Table S1: Total electronic energy (EE), zero-point correction (ZPE), enthalpy, and free energy of 4a and 4b; units are in Hartree; Table S2: Optimized coordinated of 4a and 4b at the B3LYP/6-31+G(d,p).

Author Contributions

Validation, writing—review and editing, Y.E.B.; Conceptualization and supervision, S.K.M. and E.A.B.; software, analysis, investigation, and resources A.A.; data curation, I.S.M.; writing—original draft preparation, S.A.H.A.-w.; Methodology, J.T.M.; writing and data Curation, and funding acquisition, R.A.-S. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Researchers Supporting Project No. RSP-2023R353, King Saud University, Riyadh, Saudi Arabia.

Data Availability Statement

No new data were created or analyzed in this study. Data sharing is not applicable to this article.

Acknowledgments

The authors extend their appreciation to the Researchers Supporting Project, King Saud University, Riyadh, Saudi Arabia, for funding this work through grant No. RSP-2023R353.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Henry, G.D. De novo synthesis of substituted pyridines. Tetrahedron 2004, 29, 6043–6061. [Google Scholar] [CrossRef]
  2. Vitaku, E.; Smith, D.T.; Njardarson, J.T. Analysis of the structural diversity, substitution patterns, and frequency of nitrogen heterocycles among US FDA approved pharmaceuticals: Miniperspective. J. Med. Chem. 2014, 57, 10257–10274. [Google Scholar] [CrossRef] [PubMed]
  3. Bakhite, E.A.; Abd-Ella, A.A.; El-Sayed, M.E.A.; Abdel-Raheem, S.A.A. Pyridine derivatives as insecticides. Part 1: Synthesis and toxicity of some pyridine derivatives against Cowpea Aphid, Aphis craccivora Koch (Homoptera: Aphididae). J. Agric. Food Chem. 2014, 62, 9982–9986. [Google Scholar] [CrossRef] [PubMed]
  4. Abbas, I.; Gomha, S.; Elaasser, M.; Bauomi, M. Synthesis and biological evaluation of new pyridines containing imidazole moiety as antimicrobial and anticancer agents. Turk. J. Chem. 2015, 39, 334–346. [Google Scholar] [CrossRef]
  5. Altaf, A.A.; Shahzad, A.; Gul, Z.; Rasool, N.; Badshah, A.; Lal, B.; Khan, E. A review on the medicinal importance of pyridine derivatives. J. Drug Des. Med. Chem 2015, 1, 1–11. [Google Scholar]
  6. Shamroukh, A.H.; Kotb, E.R.; Anwar, M.M.; Sharaf, M. A Review on the Chemistry of Nicotinonitriles and Their Applications. Egypt. J. Chem. 2021, 64, 4509–4529. [Google Scholar] [CrossRef]
  7. He, D.; Wang, B.; Duan, K.; Zhou, Y.; Li, M.; Jiang, H.; Wu, W. Synthesis of Densely Substituted Pyridine Derivatives from 1-Methyl-1, 3-(ar) enynes and Nitriles by a Formal [4 + 2] Cycloaddition Reaction. Org. Lett. 2022, 24, 1292–1297. [Google Scholar] [CrossRef]
  8. Manna, F.; Chimenti, F.; Bolasco, A.; Filippelli, A.; Palla, A.; Filippelli, W.; Lampa, E.; Mercantini, R. Anti-inflammatory, analgesic and antipyretic 4, 6-disubstituted 3-cyanopyridine-2-ones and 3-cyano-2-aminopyridines. Eur. J. Med. Chem. 1992, 27, 627–632. [Google Scholar] [CrossRef]
  9. Baldwin, J.J.; Engelhardt, E.L.; Hirschmann, R.; Ponticello, G.S.; Atkinson, J.G.; Wasson, B.K.; Sweet, C.S.; Scriabine, A. Heterocyclic analogs of the antihypertensive. beta.-adrenergic blocking agent (S)-2-[3-(tert-butylamino)-2-hydroxypropoxy]-3-cyanopyridine. J. Med. Chem. 1980, 23, 65–70. [Google Scholar] [CrossRef]
  10. Alaa, A.-M.; El-Subbagh, H.I.; Kunieda, T. Lewis acid-promoted transformation of 2-alkoxypyridines into 2-aminopyridines and their antibacterial activity. Part 2: Remarkably facile C–N bond formation. Bioorg. Med. Chem. 2005, 13, 4929–4935. [Google Scholar]
  11. Bekhit, A.A.; Baraka, A.M. Novel milrinone analogs of pyridine-3-carbonitrile derivatives as promising cardiotonic agents. Eur. J. Med. Chem. 2005, 40, 1405–1413. [Google Scholar] [CrossRef] [PubMed]
  12. El-Sayed, H.A.; Moustafa, A.H.; Haikal, A.E.-F.Z.; Abu-El-Halawa, R.; El Sayed, H. Synthesis, antitumor and antimicrobial activities of 4-(4-chlorophenyl)-3-cyano-2-(β-O-glycosyloxy)-6-(thien-2-yl)-nicotinonitrile. Eur. J. Med. Chem. 2011, 46, 2948–2954. [Google Scholar] [CrossRef]
  13. Malki, A.; Mohsen, M.; Aziz, H.; Rizk, O.; Shaaban, O.; El-Sayed, M.; Sherif, Z.A.; Ashour, H. New 3-Cyano-2-substituted pyridines induce apoptosis in MCF 7 breast cancer cells. Molecules 2016, 21, 230. [Google Scholar] [CrossRef]
  14. Abdel-Aziz, H.M.; Gomha, S.M.; El-Sayed, A.A.; Mabkhot, Y.N.; Alsayari, A.; Muhsinah, A. Bin Facile synthesis and antiproliferative activity of new 3-cyanopyridines. BMC Chem. 2019, 13, 1–10. [Google Scholar] [CrossRef] [PubMed]
  15. Chaubey, A.; Pandeya, S.N. Pyridine a versatile nucleuse in pharmaceutical field. Asian J. Pharm. Clin. Res 2011, 4, 5–8. [Google Scholar]
  16. Ueda, M.; Matsumura, S.; Masui, M.; Matsuura, E.; Kawakami, M.; Fujitomo, H.; Umeda, T.; Kagawa, H.; Hirohata, S.; Shima, K. Pharmacological studies on a new dihydrothienopyridine calcium antagonist. 3rd communication: Antihypertensive effects of S-(+)-methyl-4, 7-dihydro-3-isobutyl-6-methyl-4-(3-nitrophenyl) thieno [2, 3-b] pyridine-5-carboxylate in hypertensive rats and dogs. Arzneimittel-forschung 1993, 43, 1282–1290. [Google Scholar] [PubMed]
  17. Al-Trawneh, S.A.; El-Abadelah, M.M.; Zahra, J.A.; Al-Taweel, S.A.; Zani, F.; Incerti, M.; Cavazzoni, A.; Vicini, P. Synthesis and biological evaluation of tetracyclic thienopyridones as antibacterial and antitumor agents. Bioorg. Med. Chem. 2011, 19, 2541–2548. [Google Scholar] [CrossRef]
  18. Madhusudana, K.; Shireesha, B.; Naidu, V.G.M.; Ramakrishna, S.; Narsaiah, B.; Rao, A.R.; Diwan, P. V Anti-inflammatory potential of thienopyridines as possible alternative to NSAIDs. Eur. J. Pharmacol. 2012, 678, 48–54. [Google Scholar] [CrossRef]
  19. Bousquet, E.; Guerrera, F.; Siracusa, M.A.; Caruso, A.; Amico-Roxas, M. Synthesis and pharmacological activity of 3-substituted pyrido [3′, 2′: 4, 5] thieno [3, 2-d] pyrimidin-4 (3H)-ones. Farmaco. Sci. 1984, 39, 110–119. [Google Scholar] [CrossRef]
  20. Bousquet, E.; Romeo, G.; Guerrera, F.; Caruso, A.; Amico-Roxas, M. [Synthesis and analgesic activity of 3-substituted derivatives of pyrido [3′, 2′: 4, 5] thieno [3, 2-d] pyrimidin-4 (3H)-ones]. Farmaco. Sci. 1985, 40, 869–874. [Google Scholar]
  21. Hussein, A.M.; Abu-Shanab, F.A.; Ishak, E.A. The multi-component condensation in the synthesis of the substituted 2-alkylsulphanil-4, 6-diarilpyridine-3-carbonitriles and their derivatives. Phosphorus Sulfur. Silicon. Relat. Elem. 2000, 159, 55–68. [Google Scholar] [CrossRef]
  22. Quintela, J.M.; Peinador, C.; Veiga, C.; González, L.; Botana, L.M.; Alfonso, A.; Riguera, R. Synthesis and antiallergic activity of pyridothienopyrimidines. Bioorg. Med. Chem. 1998, 6, 1911–1925. [Google Scholar] [CrossRef] [PubMed]
  23. Madding, G.D.; Thompson, M.D. Regioselective syntheses of 2-amino-4, 5-dialkylthiophene-3-carboxylates and their conversion to 3, 4-dihydro-4-oxothieno [2, 3-d] pyrimidine-2-carboxylates. J. Heterocycl. Chem. 1987, 24, 581–587. [Google Scholar] [CrossRef]
  24. Böhm, N.; Krasselt, U.; Leistner, S.; Wagner, G. Reactions of 4-oxo-4H-pyrido (3′, 2′: 4, 5) thieno (3, 2-d)-1, 3-oxazines with amines. Pharmazie 1992, 47, 897–901. [Google Scholar]
  25. Wagner, G.; Leistner, S.; Vieweg, H.; Krasselt, U.; Prantz, J. Synthesis of thieno (2, 3-b) pyridines with oxalamidic acid or an oxalamidic alkylester residues and of 4-alkoxy-pyrido (3′, 2′: 4, 5) thieno (3, 2-d) pyridine-2-carboxylic acid derivates. Pharmazie 1993, 48, 342–346. [Google Scholar]
  26. Dai, X.-Y.; Zeng, X.-X.; Peng, F.; Han, Y.-Y.; Lin, H.-J.; Xu, Y.-Z.; Zhou, T.; Xie, G.; Deng, Y.; Mao, Y.-Q. A novel anticancer agent, SKLB70359, inhibits human hepatic carcinoma cells proliferation via G0/G1 cell cycle arrest and apoptosis induction. Cell. Physiol. Biochem. 2012, 29, 281–290. [Google Scholar] [CrossRef]
  27. Lockman, J.W.; Reeder, M.D.; Suzuki, K.; Ostanin, K.; Hoff, R.; Bhoite, L.; Austin, H.; Baichwal, V.; Willardsen, J.A. Inhibition of eEF2-K by thieno [2, 3-b] pyridine analogues. Bioorg. Med. Chem. Lett. 2010, 20, 2283–2286. [Google Scholar] [CrossRef]
  28. Wu, J.-P.; Fleck, R.; Brickwood, J.; Capolino, A.; Catron, K.; Chen, Z.; Cywin, C.; Emeigh, J.; Foerst, M.; Ginn, J. The discovery of thienopyridine analogues as potent IκB kinase β inhibitors. Part II. Bioorg. Med. Chem. Lett. 2009, 19, 5547–5551. [Google Scholar] [CrossRef]
  29. Egorova, K.S.; Gordeev, E.G.; Ananikov, V.P. Biological Activity of Ionic Liquids and Their Application in Pharmaceutics and Medicine. Chem.Rev. 2017, 117, 7132–7189. [Google Scholar] [CrossRef]
  30. Singh, S.K. Solubility of lignin and chitin in ionic liquids and their biomedical applications. Int. J. Biol. Macromol. 2019, 132, 265–277. [Google Scholar] [CrossRef]
  31. Singh, S.K.; Savoy, A.W. Ionic liquids Synthesis and applications: An overview. J. Mol. Liq. 2020, 297, 112038–112060. [Google Scholar] [CrossRef]
  32. Welton, T. Room-temperature ionic liquids. Solvents for synthesis and catalysis. Chem. Rev. 1999, 99, 2071–2084. [Google Scholar] [CrossRef] [PubMed]
  33. Hallett, P.; Welton, T. Room-temperature ionic liquids: Solvents for synthesis and catalysis. 2. Chem. Rev. 2011, 111, 3508–3576. [Google Scholar] [CrossRef] [PubMed]
  34. Fox, D.M.; Awad, W.H.; Gilman, J.W.; Maupin, P.H.; De Long, H.C.; Trulove, P.C. Flammability, thermal stability, and phase change characteristics of several trialkylimidazolium salts. Green Chem. 2003, 5, 724–727. [Google Scholar] [CrossRef]
  35. Zang, H.; Feng, Y.; Lou, J.; Wang, K.; Wu, C.; Liu, Z.; Zhu, X. Synthesis and performance of piperidinium-based ionic liquids as catalyst for biomass conversion into 3-acetamido-5-acetylfuran. J. Mol. Liq. 2022, 366, 120281. [Google Scholar] [CrossRef]
  36. Bruker. APEX3, SAINT and SADABS; Bruker AXS Inc.: Madison, WI, USA, 2016; p. 2014. [Google Scholar]
  37. Sheldrick, G.M. SHELXTIntegrated space-group and crystal-structure determination. Acta Crystallogr. Sect. A Found. Crystallogr. 2015, 71, 3–8. [Google Scholar] [CrossRef]
  38. Sheldrick, G.M. Crystal structure refinement with SHELXL. Acta Crystallogr. Sect. C Struct. Chem. 2015, 71, 3–8. [Google Scholar] [CrossRef]
  39. Ahsin, A.; Ayub, K. Superalkali-based alkalides Li3O@[12-crown-4]M (where M = Li, Na, and K) with remarkable static and dynamic NLO properties; A DFT study. Mater. Sci. Semicond. Process. 2022, 138, 106254. [Google Scholar] [CrossRef]
  40. Caricato, M.; Frisch, M.J.; Hiscocks, J.; Frisch, M.J. Gaussian 09: IOps Reference; Gaussian Inc.: Wallingford, CT, USA, 2009; ISBN 0972718788. [Google Scholar]
  41. Dennington, R.; Keith, T.; Millam, J. GaussView; Version 5; Semichem Inc.: Shawnee, KS, USA, 2009. [Google Scholar]
  42. Tirado-Rives, J.; Jorgensen, W.L. Performance of B3LYP density functional methods for a large set of organic molecules. J. Chem. Theory Comput. 2008, 4, 297–306. [Google Scholar] [CrossRef]
  43. Spackman, P.R.; Turner, M.J.; McKinnon, J.J.; Wolff, S.K.; Grimwood, D.J.; Jayatilaka, D.; Spackman, M.A. CrystalExplorer: A program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals. J. Appl. Crystallogr. 2021, 54, 1006–1011. [Google Scholar] [CrossRef]
Figure 1. Perspective view of 4a with the labeling scheme and 50% probability ellipsoids.
Figure 1. Perspective view of 4a with the labeling scheme and 50% probability ellipsoids.
Crystals 13 01583 g001
Figure 2. End view of portions of the two layers seen along the a-axis direction. N—H···S, C—H···O, C—H···N, and C—H···S hydrogen bonds are shown, respectively, by light violet, black, light blue, and gold dashed lines. The C—H···π(ring) interactions are shown by green dashed lines.
Figure 2. End view of portions of the two layers seen along the a-axis direction. N—H···S, C—H···O, C—H···N, and C—H···S hydrogen bonds are shown, respectively, by light violet, black, light blue, and gold dashed lines. The C—H···π(ring) interactions are shown by green dashed lines.
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Figure 3. Details of the interionic interactions in 4a. N—H···S, C—H···O, C—H···N and C—H···S hydrogen bonds are shown, respectively, by light violet, black, light blue, and gold dashed lines. The C—H···π(ring) interactions are shown by green dashed lines.
Figure 3. Details of the interionic interactions in 4a. N—H···S, C—H···O, C—H···N and C—H···S hydrogen bonds are shown, respectively, by light violet, black, light blue, and gold dashed lines. The C—H···π(ring) interactions are shown by green dashed lines.
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Figure 4. Perspective view of 4b with the labeling scheme and 50% probability ellipsoids. The interionic hydrogen bond is shown by a dashed line.
Figure 4. Perspective view of 4b with the labeling scheme and 50% probability ellipsoids. The interionic hydrogen bond is shown by a dashed line.
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Figure 5. Details of the interionic interactions in 4b. N—H···N, C—H···O, and N—H···S hydrogen bonds are depicted, respectively, by dark blue, black, and light blue dashed lines. The C—H···π(ring) interactions are shown by green dashed lines.
Figure 5. Details of the interionic interactions in 4b. N—H···N, C—H···O, and N—H···S hydrogen bonds are depicted, respectively, by dark blue, black, and light blue dashed lines. The C—H···π(ring) interactions are shown by green dashed lines.
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Figure 6. Packing in 4b viewed along the a-axis direction with interionic interactions as shown in Figure 5.
Figure 6. Packing in 4b viewed along the a-axis direction with interionic interactions as shown in Figure 5.
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Figure 7. Optimized geometries at the B3LYP level and dnorm and di images of 4a and 4b.
Figure 7. Optimized geometries at the B3LYP level and dnorm and di images of 4a and 4b.
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Figure 8. Plotted orbital densities and molecular electrostatic potential (MEP) surfaces at the B3LYP/6-31+g(d,p) level for 4a and 4b.
Figure 8. Plotted orbital densities and molecular electrostatic potential (MEP) surfaces at the B3LYP/6-31+g(d,p) level for 4a and 4b.
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Figure 9. The labeled geometries with bond critical points for 4a and 4b.
Figure 9. The labeled geometries with bond critical points for 4a and 4b.
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Figure 10. The TDOS spectra of 4a and 4b.
Figure 10. The TDOS spectra of 4a and 4b.
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Figure 11. 2D fingerprint plots of 4a and 4b.
Figure 11. 2D fingerprint plots of 4a and 4b.
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Table 1. Crystal and refinement details for 4a and 4b.
Table 1. Crystal and refinement details for 4a and 4b.
Compound4a4b
CCDC Deposit Number22371962237198
Chemical formulaC21H14ClN2O2S·C5H12NC18H15N2O2S·C5H12N
Mr480.01409.53
Crystal system, space groupMonoclinic, P21/cTriclinic, P 1 ¯
Temperature (K)120120
a, b, c (Å)7.6105 (4), 26.1975 (14), 12.2488 (7)10.0768 (4), 10.4188 (4), 11.3759 (5)
α, β, γ (°)β (°) = 99.357 (1)78.519 (1), 82.891 (1), 65.707 (1)
V3)2409.6 (2)1065.63 (8)
Z42
Radiation typeMo KαMo Kα
µ (mm−1)0.270.18
Crystal size (mm)0.21 × 0.20 × 0.090.30 × 0.27 × 0.17
Data collection
DiffractometerBruker Smart APEX CCDBruker Smart APEX CCD
Tmin, Tmax0.92, 0.970.82, 0.90
No. of measured, independent and
observed [I > 2σ(I)] reflections
22901, 6129, 4967 20787, 5673, 4716
Rint0.0280.025
(sin θ/λ)max−1)0.6850.686
Refinement
R[F2 > 2σ(F2)], wR(F2), S0.037, 0.105, 1.090.039, 0.115, 1.11
No. of reflections61295673
No. of parameters391370
H-atom treatmentAll H-atom parameters refinedH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.42, −0.220.49, −0.22
Table 2. Hydrogen-bond geometry (Å,°) in 4a.
Table 2. Hydrogen-bond geometry (Å,°) in 4a.
D—H···AD—HH···AD···AD—H···A
N3—H3A···S1i0.875(19)2.486(19)3.3011(12)155.3(16)
N3—H3B···S1ii0.953(18)2.406(18)3.2504(12)147.6(14)
C13—H13A···Cg2i1.01(2)2.87(2)3.6702(17)136.0(14)
C19—H19···O1iii0.934(17)2.552(17)3.2713(17)134.2(13)
C22—H22B···N2i1.000(17)2.597(17)3.3280(19)129.8(12)
C25—H25A···O2iv0.983(18)2.518(18)3.2771(18)133.9(13)
C25—H25B···S1i0.954(17)2.870(18)3.6474(16)139.4(13)
Symmetry codes: (i) x + 1, y, z; (ii) x + 1, −y + 1/2, z−1/2; (iii) −x + 1, −y + 1, −z + 1; (iv) x, −y + 1/2, z − 1/2. Cg2 is the centroid of the C6···C11 benzene ring.
Table 3. Hydrogen-bond geometry (Å,°) for 4b.
Table 3. Hydrogen-bond geometry (Å,°) for 4b.
D—H···AD—HH···AD···AD—H···A
N3—H3A···S1i0.883(15)2.393(15)3.2702(10)172.1(12)
N3—H3B···N10.980(16)1.980(17)2.9479(12)169.0(14)
C14—H14···Cg1ii0.971(16)2.848(15)3.6112(13)136.2(13)
C19—H19B···O1iii1.001(15)2.387(15)3.1508(14)132.4(11)
C21—H21B···Cg2iii0.948(16)2.972(16)3.9189(14)151.4(13)
C23—H23B···O1iii1.068(14)2.592(14)3.3617(14)128.4(10)
Symmetry codes: (i) −x + 1, −y + 1, −z; (ii) −x + 1, −y, −z + 1; (iii) −x + 1, −y + 1, −z + 1. Cg1 and Cg2 are, respectively, the centroids of the N1/C1···C5 and C9···C14 rings.
Table 4. Point group symmetry, total electronic energy (in Hartree), mean dipole moment (µo in au), polarizability (αo in au), average polarizability volume (αv in Å3), hyperpolarizability (βo in au), and vector part of hyperpolarizability (βvec in au) of 4a and 4b.
Table 4. Point group symmetry, total electronic energy (in Hartree), mean dipole moment (µo in au), polarizability (αo in au), average polarizability volume (αv in Å3), hyperpolarizability (βo in au), and vector part of hyperpolarizability (βvec in au) of 4a and 4b.
Parameters4a4b
SymmetryC1C1
Total energy−2179.57−1605.68
Dipole moment22.9239.46
Polarizability (αo)402.47368.105
Isotropic average polarizability volume59.6454.547
Hyperpolarizability (βo)2400.722722.63
βvec2382.712660.48
Table 5. Energies of HOMO and LUMO (in eV), HOMO-LUMO gaps (EH-L in eV), NBO charges (QX in eV), ionization potential (IP in eV), electron affinity (EA in eV), chemical hardness (Ƞ in eV), chemical potential (µ in eV), electronegativity (χ in eV), and electrophilicity index (ω in eV) for 4a and 4b.
Table 5. Energies of HOMO and LUMO (in eV), HOMO-LUMO gaps (EH-L in eV), NBO charges (QX in eV), ionization potential (IP in eV), electron affinity (EA in eV), chemical hardness (Ƞ in eV), chemical potential (µ in eV), electronegativity (χ in eV), and electrophilicity index (ω in eV) for 4a and 4b.
Parameters 4a4b
EHOMO−4.511−5.35
ELUMO−1.72−1.95
EH-L2.783.39
Q(N/O/S)−0.67/−0.71/−0.15−0.72/−0.61/−0.274
Q(Cl)−0.002
Ionization potential (IP)4.515.35
Electron affinity (EA)1.721.95
Chemical hardness (Ƞ)1.391.71
Chemical potential (µ)−3.11−3.65
Electronegativity (χ)3.113.65
Electrophilicity index (ω)3.473.89
Table 6. QTAIM analysis of using BCP (3, −1) for the 4a and 4b compound; the values are (in au).
Table 6. QTAIM analysis of using BCP (3, −1) for the 4a and 4b compound; the values are (in au).
4a
BCPInteractionsρ (r)2 (r)G (r)V (r)H (r)
112O15-O210.012420.042610.00960−0.008530.0010661
111H49-C230.010820.031430.00681−0.005760.0010481
137H52-Cl270.0013600.0037350.0007138−0.00049360.0002201
109H51-Cl270.00218670.006167560.0011639−0.00078590.00037798
92H48-O150.0664320.00174220.051628−0.59701−0.008073
90H34-O80.0098010.0325570.0065859−0.005032550.0015534
98C14-H280.00961810.03900920.0073554−0.00495840.0023969
136C19-N200.462130.20990.8788−0.1705−0.82634
4b
71C2-S10.20319−0.3824520.11288−0.32139−0.208505
74H46-S10.0422700.05002400.019821−0.0271371−0.0073155
102H45-S10.05121850.1016390.03064215−0.0358745−0.0052323
125O18-C160.0122980.05016360.0108061−0.009071310.017348
64C22-H250.01107280.0441800.0085618−0.006078570.00248324
88H30-H380.0040220.0399760.0075161−0.0050380.00247811
Table 7. The Hirshfeld surface analysis of compounds 4a and 4b.
Table 7. The Hirshfeld surface analysis of compounds 4a and 4b.
4a
MinimumMeanMaximum
di0.86221.69902.7256
de0.86331.69832.7694
dnorm−0.37750.48861.6265
Shapeindex−0.99720.19550.9965
curvedness−4.0821−0.92980.4266
4b
MinimumMeanMaximum
di0.82191.65882.6637
de0.82201.66082.5890
dnorm−0.44160.48541.3567
Shapeindex−0.99910.20390.9987
curvedness−3.2614−0.91920.3724
Table 8. Fingerprints by element type; the surface area included (as a percentage of the total surface area) for close contacts between the atoms inside and outside the surface.
Table 8. Fingerprints by element type; the surface area included (as a percentage of the total surface area) for close contacts between the atoms inside and outside the surface.
4a
Inside AtomOutside Atom
ClSONCHTotal %
C0.9---0.28.79.7
Cl--0.90.10.84.36.1
H2.54.53.25.37.444.167.0
N0.1----6.06.1
O0.7----3.44.1
S-----6.96.9
4b
Inside atomOutside atom
SONCHTotal %
C-0.5-0.313.514.3
H3.12.95.29.948.469.6
N-0.5--6.36.8
O--0.50.53.14.0
S----5.35.3
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MDPI and ACS Style

El Bakri, Y.; Mohamed, S.K.; Ahsin, A.; Bakhite, E.A.; Marae, I.S.; A. H. Al-waleedy, S.; Mague, J.T.; Al-Salahi, R. X-ray Diffraction, Spectroscopy, Optical Properties, NPA, NBO, FMO, and Hirshfeld Surface Analyses of Two Newly Synthesized Piperidinium Ionic Liquids. Crystals 2023, 13, 1583. https://doi.org/10.3390/cryst13111583

AMA Style

El Bakri Y, Mohamed SK, Ahsin A, Bakhite EA, Marae IS, A. H. Al-waleedy S, Mague JT, Al-Salahi R. X-ray Diffraction, Spectroscopy, Optical Properties, NPA, NBO, FMO, and Hirshfeld Surface Analyses of Two Newly Synthesized Piperidinium Ionic Liquids. Crystals. 2023; 13(11):1583. https://doi.org/10.3390/cryst13111583

Chicago/Turabian Style

El Bakri, Youness, Shaaban K. Mohamed, Atazaz Ahsin, Etify A. Bakhite, Islam S. Marae, Safiyyah A. H. Al-waleedy, Joel T. Mague, and Rashad Al-Salahi. 2023. "X-ray Diffraction, Spectroscopy, Optical Properties, NPA, NBO, FMO, and Hirshfeld Surface Analyses of Two Newly Synthesized Piperidinium Ionic Liquids" Crystals 13, no. 11: 1583. https://doi.org/10.3390/cryst13111583

APA Style

El Bakri, Y., Mohamed, S. K., Ahsin, A., Bakhite, E. A., Marae, I. S., A. H. Al-waleedy, S., Mague, J. T., & Al-Salahi, R. (2023). X-ray Diffraction, Spectroscopy, Optical Properties, NPA, NBO, FMO, and Hirshfeld Surface Analyses of Two Newly Synthesized Piperidinium Ionic Liquids. Crystals, 13(11), 1583. https://doi.org/10.3390/cryst13111583

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