Identification and Genetic Diversity of Spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) in Egypt
Abstract
:1. Introduction
2. Materials and Methods
2.1. Insect Collection
2.2. Molecular Identification
2.2.1. Genomic DNA Extraction, PCR Amplification, and Sequencing of mtCOXI Gene
2.2.2. Sequence Analysis and Phylogeny Construction
2.2.3. Genetic Population Structure Analyses
2.2.4. Genotyping of Isolated S. frugipedra by RFLP-PCR
3. Results
3.1. Molecular Identification of Spodoptera Frugiperda and Construction of Phylogenetic Tree
3.2. Polymorphism Results
3.3. Analysis of PCR-RFLP Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Country | COXI Accession Numbers | Continent |
---|---|---|
Bangladesh | MT933063.1 | Asia |
Bhutan | MT324066.1 | Asia |
Brazil | JF854740.1 | South America |
Burkina Faso | MT152769.1 | Africa |
Cape Verde | MT152770.1 | Africa |
Congo | MT933053.1 | Africa |
Guinea | MT152763.1 | Africa |
India | MH639004.1 | Asia |
Indonesia | OQ891323.1 | Asia |
Japan | LC546859.1 | Asia |
Korea | MT641268.1 | Asia |
Mali | MT152759.1 | Africa |
Nepal | MT103345.1 | Asia |
Niger | MT152811.1 | Africa |
Senegal | MT152792.1 | Africa |
South Africa | MF593245.1 | Africa |
Tanzania | MT103348.1 | Africa |
Taiwan | LC508690.1 | Asia |
Togo | MT152775.1 | Africa |
Uganda | MT933059.1 | Africa |
USA | MK790611.1 | North America |
Vietnam | MT103337.1 | Asia |
Zimbabwe | MT103346.1 | Africa |
Sites District/City | Samples | ||
---|---|---|---|
ID | Coordinate | Accession Number | |
Shebeen El-koam, Menufia | Shebeen El-koam | 30°33′37.6416″ N, 31°0′28.6128″ E | OQ925919.1 |
Qillin, Kafr El-sheikh | egy-kafr el-sheikh1 | 31°02′47″ N 30°51′16″ E/31.04639° N 30.854581° E/31.04639; 30.854581 | OP647509.1 |
Qillin, Kafr El-sheikh | egy-kafr el-sheikh 2 | 26°36′0″ N, 31°39′0″ E | OP649580.1 |
Qillin, Kafr El-sheikh | Kafr Elsheikh | 26°36′0″ N, 31°39′0″ E | OQ920981.1 |
Shandawil, Sohag | egy-Sohag | 26°37′11″ N 31°38′46″ E | OP649582.1 |
Benha, Qalyubia | egy-kaliopia | 30°27′57.5748″ N, 31°11′5.3916″ E | OP648094.1 |
Kom ombo, Aswan | Aswan1 | 24°28′ N 32°57′ E/24.467° N 32.950° E/24.467 | OQ920901.1 |
Kom ombo, Aswan | Aswan2 | 24°28′ N 32°57′ E/24.467° N 32.950° E/24.467 | OQ150895.1 |
Shandawil, Sohag | egy-KRHOSSAM | 26°37′11″ N 31°38′46″ E | OP648105.1 |
Accession Numbers, Strains | Nucleotide Position | ||||
---|---|---|---|---|---|
105 | 195 | 246 | 477 | 558 | |
OP648105, egy-KRHOSSAM (laboratory strain—this study) | G | T | C | T | C |
MT152769, S. frugiperda, Burkina Faso (Corn strain) | G | T | C | T | C |
OP647509, egy-kafr el-sheikh1 (this study) | A | A | T | C | T |
OP649580, egy-kafr el-sheikh 2 (this study) | A | A | T | C | T |
OQ920981, Kafr Elshaikh (this study) | A | A | T | T | C |
OQ925919, Shebeen El-koam (this study) | G | T | T | T | C |
OP649582, egy-Sohag (this study) | G | T | C | T | C |
OP648094, egy-kaliopia (this study) | G | T | C | T | C |
OQ920901, Aswan1 (this study) | G | A | C | T | C |
OQ150895, Aswan2 (this study) | G | A | T | T | C |
MT152811- S. frugiperda, Niger (Rice strain) | A | A | T | C | T |
Number of Polymorphic Sites | Nucleotide Diversity | Haplotype Diversity | Variance of Haplotype Diversity | Fu’s Fs | Fu and Li’s D | Tajima’s D |
---|---|---|---|---|---|---|
5 | 0.00258 | 0.392 | 0.01759 | 2.074 | 1.30779 | −0.95225 |
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Lebody, K.A.E.; Salim, R.G.; El-Sayed, G.M.; Mahmoud, S.H. Identification and Genetic Diversity of Spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) in Egypt. Agronomy 2024, 14, 809. https://doi.org/10.3390/agronomy14040809
Lebody KAE, Salim RG, El-Sayed GM, Mahmoud SH. Identification and Genetic Diversity of Spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) in Egypt. Agronomy. 2024; 14(4):809. https://doi.org/10.3390/agronomy14040809
Chicago/Turabian StyleLebody, Kreema A. El, Rasha G. Salim, Ghada M. El-Sayed, and Shaymaa H. Mahmoud. 2024. "Identification and Genetic Diversity of Spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) in Egypt" Agronomy 14, no. 4: 809. https://doi.org/10.3390/agronomy14040809