Genetic Signature of River Capture Imprinted in Schizopygopsis Fish from the Eastern Tibetan Plateau
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sampling and Data Acquisition
2.2. Phylogenetic Reconstruction
2.3. Estimation of Divergence Time and Biogeographic Analyses
3. Results
3.1. Phylogenetic Analyses and Divergence Time Estimation
3.2. Ancestral State Reconstruction
4. Discussion
4.1. Taxonomic Assignments
4.2. Palaeo-Drainages Connection Signature
4.3. River Capture History in the Upper Changjiang System
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Drainage (Locality) | Elevation (m) | Species | Haplotype | GenBank Number | Reference |
---|---|---|---|---|---|
Changjiang/Yangtze System | |||||
1. Tuotuo River (Tanggula town, Qinghai, China) | 4700 | Schizopygopsis thermalis S. microcephalus | Stherm HmT241 | DQ309367 KY461332 | [40,41] |
2. Jinsha River (First Bend, Shigu town, Yunnan, China) | 1850 | S.microcephalus | YNSG08, 23, 27, 31,65 | MN399193-MN399197 | this study |
3. Shuiluo River (Litang and Daocheng Counties, Sichuan, China) | 3976 | S. malacanthus malacanthus | Smm1, 2, 3, 4 | DQ533789-DQ533792 | [42] |
4. Litang River (Litang County, Sichuan, China) | 3685 | S. malacanthus malacanthus | Smm5, 6 | DQ533793, DQ533794 | [42] |
5. Yalong River (Chengduo county, Qinghai, China) | 3831 | S. malacanthus | SmZ1, SmFEMS, SmFEM2 | DQ309360, DQ646898, DQ646899 | [40,43] |
6. Jialing River (Têwo county, Gansu, China) | 1700 | S. kialingensis | SkT260 | KY461338 | [32] |
Yellow River System | |||||
7. Yellow River (Maduo county, Qinghai province) | 4300 | Chuanchia labiosa | Clabi1 | KT833098 | [44] |
8. Heihe River (Zhangye city, Gansu, China) | 3633 | Gymnocypris eckloni chilianensis | Gech31 | KM371149 | [45] |
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He, L.; Bi, Y.; Weese, D.; Wu, J.; Xu, S.; Ren, H.; Zhang, F.; Liu, X.; Chen, L.; Zhang, J. Genetic Signature of River Capture Imprinted in Schizopygopsis Fish from the Eastern Tibetan Plateau. Genes 2024, 15, 1148. https://doi.org/10.3390/genes15091148
He L, Bi Y, Weese D, Wu J, Xu S, Ren H, Zhang F, Liu X, Chen L, Zhang J. Genetic Signature of River Capture Imprinted in Schizopygopsis Fish from the Eastern Tibetan Plateau. Genes. 2024; 15(9):1148. https://doi.org/10.3390/genes15091148
Chicago/Turabian StyleHe, Lijun, Yonghong Bi, David Weese, Jie Wu, Shasha Xu, Huimin Ren, Fenfen Zhang, Xueqing Liu, Lei Chen, and Jing Zhang. 2024. "Genetic Signature of River Capture Imprinted in Schizopygopsis Fish from the Eastern Tibetan Plateau" Genes 15, no. 9: 1148. https://doi.org/10.3390/genes15091148