Désorite, Pb2(Fe3+6Zn)O2(PO4)4(OH)8, a New Phosphate Mineral Isotypic with Jamesite
Abstract
:1. Introduction
2. Occurrence, Geological Setting and Mineral Association
3. General Appearance, Physical, Chemical and Optical Properties
4. Chemical Composition
5. X-ray Diffraction
6. Description of Crystal Structure
7. Discussion
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Constituent | Mean | Range | S.D. | Standard/Line | Normalized |
---|---|---|---|---|---|
PbO | 30.92 | 30.53–31.34 | 0.23 | PbS/Pb Mα | 32.24 |
ZnO | 2.91 | 2.59–3.06 | 0.15 | ZnO/Zn Kα | 3.04 |
Fe2O3 | 36.02 | 35.49–36.76 | 0.46 | Fayalite/Fe Kα | 37.57 |
As2O5 | 0.84 | 0.62–0.87 | 0.08 | GaAs/As Kα | 0.88 |
P2O5 | 19.85 | 18.67–19.65 | 0.40 | apatite/P Kα | 20.70 |
H2O * | 5.35 | 5.58 | |||
Total | 95.89 | 100.01 |
Iobs | dobs | dcalc | Icalc | hkl | Iobs | dobs | dcalc | Icalc | hkl | Iobs | dobs | dcalc | Icalc | hkl | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
72 | 9.492 | 9.527 | 65 | 0 0 1 | 27 | 2.283 | 2.298 | 9 | 0 1 | 30 | 1.613 | 1.624 | 10 | 0 5 1 | ||
— | — | 8.725 | 5 | 0 1 0 | 2.289 | 17 | 2 0 2 | 1.619 | 5 | 2 1 | ||||||
6 | 7.872 | 7.854 | 5 | 0 1 | 2.281 | 3 | 3 | 1.615 | 3 | 3 2 | ||||||
9 | 5.328 | 5.383 | 3 | 1 0 0 | — | — | 2.266 | 6 | 1 4 | 1.604 | 16 | 2 4 | ||||
24 | 4.862 | 4.905 | 7 | 1 0 | 15 | 2.231 | 2.240 | 8 | 0 2 3 | 31 | 1.593 | 1.601 | 3 | 0 3 | ||
4.802 | 14 | 0 1 | 2.226 | 5 | 1 1 | 1.598 | 5 | 0 5 | ||||||||
100 | 4.584 | 4.580 | 100 | 0 1 | — | — | 2.218 | 4 | 4 | 1.587 | 11 | 2 4 0 | ||||
29 | 4.273 | 4.314 | 6 | 1 1 0 | 35 | 2.181 | 2.182 | 21 | 0 3 2 | 14 | 1.574 | 1.579 | 7 | 1 6 | ||
4.278 | 16 | 1 | 2.175 | 9 | 2 1 | 1.564 | 4 | 1 3 | ||||||||
59 | 3.687 | 3.722 | 14 | 1 1 | 16 | 2.126 | 2.139 | 6 | 2 | 24 | 1.543 | 1.546 | 9 | 0 6 | ||
3.699 | 22 | 0 1 2 | 2.126 | 8 | 0 1 4 | 1.543 | 6 | 1 5 | ||||||||
3.655 | 20 | 1 1 1 | 2.112 | 4 | 1 4 | 1.536 | 3 | 1 2 | ||||||||
29 | 3.573 | 3.590 | 18 | 2 | 20 | 2.082 | 2.082 | 16 | 1 3 | 7 | 1.511 | 1.527 | 3 | 0 3 | ||
3.548 | 17 | 0 2 1 | 17 | 2.021 | 2.027 | 13 | 4 | 1.514 | 3 | 1 1 | ||||||
27 | 3.483 | 3.473 | 21 | 1 0 2 | 20 | 1.996 | 2.005 | 9 | 0 5 | 8 | 1.484 | 1.488 | 4 | 5 2 | ||
— | — | 3.362 | 5 | 0 3 | 1.999 | 7 | 2 0 3 | 5 | 1.465 | 1.475 | 4 | 5 | ||||
79 | 3.307 | 3.305 | 68 | 1 2 | 1.990 | 6 | 1 2 3 | 17 | 1.436 | 1.442 | 3 | 4 3 | ||||
90 | 3.183 | 3.208 | 28 | 1 2 | — | — | 1.959 | 4 | 2-3 3 | 1.437 | 5 | 4 1 | ||||
3.175 | 67 | 1 2 0 | 17 | 1.916 | 1.923 | 7 | 1 1 4 | 1.433 | 5 | 0 6 | ||||||
— | — | 3.100 | 3 | 0 3 | 1.908 | 9 | 0-3 5 | 1.428 | 3 | 6 | ||||||
17 | 2.944 | 2.953 | 21 | 0 2 | 11 | 1.873 | 1.888 | 5 | 2 | 9 | 1.419 | 1.422 | 3 | 3 | ||
— | — | 2.911 | 4 | 1 1 2 | 24 | 1.854 | 1.863 | 21 | 1 5 | 1.414 | 3 | 2 1 5 | ||||
79 | 2.850 | 2.856 | 66 | 3 | 1.847 | 3 | 0 2 | 14 | 1.398 | 1.406 | 5 | 2 1 | ||||
— | — | 2.804 | 8 | 0 3 | 25 | 1.821 | 1.835 | 4 | 0 4 | 1.397 | 5 | 7 | ||||
32 | 2.775 | 2.792 | 22 | 1 2 1 | 1.828 | 15 | 0 5 | 1.393 | 3 | 4 4 | ||||||
97 | 2.707 | 2.743 | 17 | 1 3 | 1.809 | 3 | 1 0 | 11 | 1.382 | 1.377 | 5 | 2 5 0 | ||||
2.710 | 55 | 0 1 3 | — | — | 1.804 | 5 | 3 | 5 | 1.360 | 1.361 | 3 | 0 0 7 | ||||
2.682 | 25 | 1 0 | — | — | 1.797 | 3 | 4 | 14 | 1.349 | 1.355 | 4 | 0 2 6 | ||||
— | — | 2.671 | 3 | 1 0 3 | 10 | 1.780 | 1.774 | 8 | 0 4 2 | 1.346 | 5 | 4 0 0 | ||||
12 | 2.631 | 2.618 | 12 | 0 3 | — | — | 1.750 | 3 | 2 0 | 7 | 1.333 | 1.335 | 4 | 2 0 6 | ||
23 | 2.537 | 2.551 | 16 | 1 1 | 9 | 1.736 | 1.734 | 7 | 5 0 | 11 | 1.301 | 1.309 | 3 | 0-6 6 | ||
2.519 | 8 | 0 4 | 11 | 1.706 | 1.719 | 5 | 1 | 1.298 | 5 | 1 1 | ||||||
— | — | 2.484 | 5 | 1 | 1.710 | 3 | 3 1 0 | 1.294 | 4 | 0 4 | ||||||
— | — | 2.474 | 4 | 2 1 0 | 19 | 1.690 | 1.695 | 15 | 1 3 3 | 6 | 1.253 | 1.259 | 3 | 0 8 | ||
50 | 2.452 | 2.456 | 13 | 2 1 | 1.681 | 9 | 0 6 | 8 | 1.232 | 1.241 | 4 | 2 | ||||
2.446 | 28 | 3 1 | 13 | 1.656 | 1.661 | 3 | 1 | 1.223 | 3 | 6 2 | ||||||
— | — | 2.418 | 3 | 1 3 0 | 1.653 | 8 | 2 4 | |||||||||
12 | 2.314 | 2.339 | 8 | 2 | 16 | 1.637 | 1.649 | 6 | 3 1 | |||||||
2.315 | 3 | 2 1 1 | 1.633 | 5 | 5 |
Site | Site Scattering Values * | Site Occupancies According to OccQP | |
---|---|---|---|
Refinement | OccQP | ||
Fe1 | 26.351 | 26.326 | Fe3+0.919Zn2+0.081 |
Fe2 | 25.579 | 25.579 | Fe3+0.984☐0.016 |
Fe3 | 25.964 | 25.962 | Fe3+0.600Zn2+0.350☐0.050 |
Fe4 | 51.704 | 51.700 | Fe3+0.920Zn2+0.065☐0.015 |
Fe5 | 50.830 | 50.830 | Fe3+0.978☐0.022 |
Diffractometer | Rigaku R-Axis Rapid II | |
---|---|---|
X-ray radiation | MoKα (λ = 0.71075 Å) | |
Temperature | 293(2) K | |
Structural formula | Pb1.98(Fe3+6.30Zn0.56☐0.14)O2[(P0.98As0.02)O4]4(OH)8 | |
(incl. unlocated H) | ||
Space group | P-1 (#2) | |
Unit-cell dimensions | a = 5.4389(7) Å | α = 109.024(8)° |
b = 9.3242(13) Å | β = 90.521(6)° | |
c = 10.0927(12) Å | γ = 97.588(7)° | |
V | 478.90(11) Å3 | |
Z | 1 | |
Density (for above formula) | 4.680 g·cm−3 | |
Absorption coefficient | 23.234 mm−1 | |
F(000) | 620.2 | |
Crystal size | 70 × 40 × 5 mm | |
θ range | 3.65 to 22.37° | |
Index ranges | −5 ≤ h ≤ 5, −9 ≤ k ≤ 9, −10 ≤ l ≤ 10 | |
Reflections collected/unique | 2729 / 1213; Rint = 0.076 | |
Reflections with I > 2σI | 937 | |
Completeness to θ = 22.37° | 99.10% | |
Refinement method | Full-matrix least-squares on F2 | |
Parameters/restraints | 195 / 0 | |
GoF | 1.026 | |
Final R indices [I > 2σI] | R1 = 0.0485, wR2 = 0.0999 | |
R indices (all data) | R1 = 0.0670, wR2 = 0.1096 | |
Extinction coefficient | 0.0007(6) | |
Largest diff. peak/hole | +1.45 / −1.70 e/A3 | |
Rint = S|Fo2 − Fo2(mean)|/S[Fo2]. GoF = S = {S[w(Fo2 − Fc2)2]/(n − p)}1/2. R1 = S||Fo| − |Fc||/S|Fo|. wR2 = {S[w(Fo2 − Fc2)2]/S[w(Fo2)2]}1/2; w = 1/[s2(Fo2)+(aP)2+bP] where a is 0.0541, b is 1.6 and P is [2Fc2+Max(Fo2,0)]/3. |
x/a | y/b | z/c | Ueq | Occupancy | ||
---|---|---|---|---|---|---|
PbA | 0.4299(15) | 0.7603(4) | 0.5712(3) | 0.0284(11) | Pb0.72(3) | |
PbB | 0.322(6) | 0.7347(19) | 0.5774(8) | 0.048(4) | Pb0.27(3) | |
Fe1 | 0 | 0 | 0.5 | 0.0241(10) | Fe0.919Zn0.081 | |
Fe2 | 0 | 0.5 | 0 | 0.0150(9) | Fe0.984 | |
Fe3 | 0.5 | 0 | 0 | 0.0162(9) | Fe0.600Zn0.345 | |
Fe4 | 0.7445(4) | 0.6325(3) | 0.2812(2) | 0.0166(7) | Fe0.920Zn0.065 | |
Fe5 | 0.0047(4) | 0.0769(3) | 0.1691(2) | 0.0191(8) | Fe0.978 | |
P1 | 0.1984(7) | 0.4349(5) | 0.2747(4) | 0.0172(19) | P0.996(12)As0.004(12) | |
P2 | 0.2909(7) | 0.8195(5) | 0.2310(4) | 0.0130(17) | P0.970(11)As0.030(11) | |
O1 | 0.9884(18) | 0.5143(13) | 0.3460(10) | 0.022(3) | 1 | |
O2 | 0.1885(16) | 0.2756(14) | 0.2902(10) | 0.020(3) | 1 | |
O3 | 0.1986(17) | 0.4149(13) | 0.1155(10) | 0.018(3) | 1 | |
O4 | 0.4520(19) | 0.5258(13) | 0.3502(10) | 0.023(3) | 1 | |
O5 | 0.5181(18) | 0.7393(14) | 0.1903(10) | 0.021(3) | 1 | |
O6 | 0.2762(18) | 0.8865(14) | 0.3921(10) | 0.026(3) | 1 | |
O7 | 0.3011(18) | 0.9521(13) | 0.1683(10) | 0.022(3) | 1 | |
O8 | 0.0440(17) | 0.7060(13) | 0.1678(10) | 0.020(3) | 1 | |
O9 | 0.7863(17) | 0.8008(12) | 0.4547(9) | 0.016(3) | 1 | |
OH10 | 0.2947(17) | 0.5496(12) | 0.9041(9) | 0.018(3) | 1 | |
OH11 | 0.1322(16) | 0.9748(12) | 0.6758(9) | 0.015(3) | 1 | |
OH12 | 0.7086(17) | 0.1769(13) | 0.1398(9) | 0.019(3) | 1 | |
OH13 | 0.8065(19) | 0.8984(13) | 0.0090(10) | 0.021(3) | 1 | |
U11 | U22 | U33 | U23 | U13 | U12 | |
PbA | 0.029(2) | 0.0385(11) | 0.0199(8) | 0.0094(6) | 0.0064(9) | 0.0120(12) |
PbB | 0.057(10) | 0.049(4) | 0.034(2) | 0.003(2) | 0.014(3) | 0.026(5) |
Fe1 | 0.0222(19) | 0.026(2) | 0.0230(18) | 0.0042(16) | 0.0121(15) | 0.0100(16) |
Fe2 | 0.0141(17) | 0.021(2) | 0.0103(16) | 0.0053(14) | 0.0023(14) | 0.0045(15) |
Fe3 | 0.0097(16) | 0.021(2) | 0.0170(16) | 0.0049(14) | 0.0013(14) | 0.0029(14) |
Fe4 | 0.0123(13) | 0.0241(17) | 0.0128(12) | 0.0045(11) | 0.0034(10) | 0.0048(11) |
Fe5 | 0.0140(13) | 0.0252(17) | 0.0168(12) | 0.0048(11) | 0.0002(10) | 0.0039(11) |
P1 | 0.014(3) | 0.028(3) | 0.012(2) | 0.009(2) | 0.0015(18) | 0.004(2) |
P2 | 0.009(2) | 0.022(3) | 0.008(2) | 0.0054(18) | 0.0026(16) | 0.0035(18) |
O1 | 0.015(6) | 0.040(8) | 0.017(6) | 0.013(5) | 0.002(5) | 0.014(6) |
O2 | 0.004(5) | 0.041(9) | 0.014(5) | 0.008(5) | −0.002(4) | −0.001(5) |
O3 | 0.016(6) | 0.025(7) | 0.013(5) | 0.003(5) | −0.003(5) | 0.008(5) |
O4 | 0.028(6) | 0.033(8) | 0.013(5) | 0.012(5) | −0.002(5) | 0.006(6) |
O5 | 0.016(5) | 0.036(8) | 0.016(6) | 0.015(5) | 0.002(5) | 0.003(5) |
O6 | 0.021(6) | 0.048(9) | 0.011(5) | 0.011(6) | 0.007(5) | 0.012(6) |
O7 | 0.019(6) | 0.017(7) | 0.029(6) | 0.007(5) | 0.014(5) | −0.001(5) |
O8 | 0.017(6) | 0.021(7) | 0.018(5) | 0.002(5) | 0.003(5) | 0.008(5) |
O9 | 0.018(5) | 0.016(7) | 0.010(5) | −0.003(5) | 0.008(5) | 0.003(5) |
OH10 | 0.019(6) | 0.023(8) | 0.011(5) | 0.002(5) | −0.002(5) | 0.006(5) |
OH11 | 0.010(5) | 0.024(7) | 0.015(5) | 0.009(5) | 0.006(5) | 0.003(5) |
OH12 | 0.010(5) | 0.038(8) | 0.006(5) | 0.004(5) | 0.002(4) | −0.001(5) |
OH13 | 0.022(6) | 0.031(8) | 0.013(5) | 0.010(5) | 0.004(5) | 0.008(5) |
PbA–O9 | 2.328(13) | Fe1–O9 (×2) | 1.969(10) | P1–O1 | 1.504(11) |
PbA–O4 | 2.582(11) | Fe1–OH11 (×2) | 2.004(9) | P1–O2 | 1.538(13) |
PbA–O2 | 2.610(10) | Fe1–O6 (×2) | 2.064(10) | P1–O3 | 1.556(10) |
PbA–O6 | 2.640(11) | <Fe1–O> | 2.012 | P1–O4 | 1.566(11) |
PbA–OH11 | 2.692(11) | <P1–O> | 1.541 | ||
PbA–OH12 | 2.909(10) | Fe2–OH10 (×2) | 1.961(10) | ||
PbA–O4 | 3.159(11) | Fe2–O3 (×2) | 1.990(10) | P2–O5 | 1.519(11) |
PbA–O7 | 3.247(11) | Fe2–O8 (×2) | 2.089(10) | P2–O6 | 1.547(10) |
PbA–O1 | 3.353(12) | <Fe2–O> | 2.013 | P2–O7 | 1.557(12) |
PbA–O6 | 3.367(13) | P2–O8 | 1.581(10) | ||
PbA–O1 | 3.511(13) | Fe3–OH12 (×2) | 1.990(10) | <P2–O> | 1.551 |
PbA–O2 | 3.671(13) | Fe3–OH9 (×2) | 2.038(11) | ||
<PbA–O> | 3.006 | Fe3–O7 (×2) | 2.158(10) | Hydrogen bonds | |
<Fe3–O> | 2.062 | OH10···O3 | 2.749(13) | ||
PbB–OH11 | 2.499(14) | OH10···O5 | 2.998(13) | ||
PbB–O4 | 2.651(15) | Fe4–O9 | 1.921(9) | OH10···OH12 | 2.728(16) |
PbB–OH12 | 2.714(13) | Fe4–O4 | 2.016(11) | OH11···O5 | 2.970(14) |
PbB–O6 | 2.715(16) | Fe4–O1 | 2.060(10) | OH11···O6 | 2.896(14) |
PbB–O9 | 2.90(3) | Fe4–O5 | 2.061(10) | OH11···O9 | 2.807(15) |
PbB–O1 | 2.96(2) | Fe4–OH10 | 2.062(10) | OH12···O7 | 2.943(13) |
PbB–O2 | 2.99(3) | Fe4–O8 | 2.164(10) | OH12···OH10 | 2.728(16) |
PbB–O1 | 3.00(3) | <Fe4–O> | 2.047 | OH13···O3 | 2.775(16) |
PbB–O2 | 3.10(3) | OH13···O5 | 3.036(14) | ||
PbB–O4 | 3.141(13) | Fe5–OH11 | 1.911(9) | ||
PbB–O9 | 3.36(3) | Fe5–O2 | 1.984(11) | ||
PbB–O7 | 3.57(3) | Fe5–OH12 | 2.030(11) | ||
<PbB–O> | 2.967 | Fe5–OH9 | 2.070(10) | ||
Fe5–O7 | 2.108(11) | ||||
Fe5–OH9 | 2.140(10) | ||||
<Fe5–O> | 2.041 |
PbA | PbB | Fe1 | Fe2 | Fe3 | Fe4 | Fe5 | P1 | P2 | Hydrogen Bonds | Σ | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Donated | Accepted | |||||||||||
O1 | 0.04, 0.03 | 0.04, 0.03 | 0.43 | 1.31 | 1.88 | |||||||
O2 | 0.19, 0.02 | 0.03, 0.03 | 0.53 | 1.2 | 2.00 | |||||||
O3 | 0.53 ×2↓ | 1.14 | 0.07, 0.10 | 1.84 | ||||||||
O4 | 0.20, 0.06 | 0.07, 0.02 | 0.49 | 1.11 | 1.95 | |||||||
O5 | 0.43 | 1.28 | 0.04, 0.05, 0.06 | 1.86 | ||||||||
O6 | 0.18, 0.04 | 0.06 | 0.43 ×2↓ | 1.19 | 0.05 | 1.95 | ||||||
O7 | 0.05 | 0.01 | 0.30 ×2↓ | 0.38 | 1.15 | 0.07 | 1.96 | |||||
O8 | 0.40 ×2↓ | 0.32 | 1.08 | 1.80 | ||||||||
O9 | 0.34 | 0.04, 0.02 | 0.56 ×2↓ | 0.63 | 0.06 | 1.65 | ||||||
OH10 | 0.57 ×2↓ | 0.43 | −0.07, −0.04,−0.07 | 0.11 | 0.93 | |||||||
OH11 | 0.16 | 0.09 | 0.51 ×2↓ | 0.65 | −0.05, −0.05,−0.06 | 1.26 | ||||||
OH12 | 0.10 | 0.06 | 0.48 ×2↓ | 0.47 | −0.07, −0.11 | 0.07 | 1.00 | |||||
OH13 | 0.42 ×2↓ | 0.42,0.35 | −0.10, −0.06 | 1.04 | ||||||||
Σ | 1.41 | 0.50 | 3.00 | 3.00 | 2.40 | 2.73 | 2.80 | 4.76 | 4.7 |
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Kampf, A.R.; Möhn, G.; Ma, C. Désorite, Pb2(Fe3+6Zn)O2(PO4)4(OH)8, a New Phosphate Mineral Isotypic with Jamesite. Minerals 2024, 14, 175. https://doi.org/10.3390/min14020175
Kampf AR, Möhn G, Ma C. Désorite, Pb2(Fe3+6Zn)O2(PO4)4(OH)8, a New Phosphate Mineral Isotypic with Jamesite. Minerals. 2024; 14(2):175. https://doi.org/10.3390/min14020175
Chicago/Turabian StyleKampf, Anthony R., Gerhard Möhn, and Chi Ma. 2024. "Désorite, Pb2(Fe3+6Zn)O2(PO4)4(OH)8, a New Phosphate Mineral Isotypic with Jamesite" Minerals 14, no. 2: 175. https://doi.org/10.3390/min14020175
APA StyleKampf, A. R., Möhn, G., & Ma, C. (2024). Désorite, Pb2(Fe3+6Zn)O2(PO4)4(OH)8, a New Phosphate Mineral Isotypic with Jamesite. Minerals, 14(2), 175. https://doi.org/10.3390/min14020175