Uncovering Unique Green Algae and Cyanobacteria Isolated from Biocrusts in Highly Saline Potash Tailing Pile Habitats, Using an Integrative Approach
Abstract
:1. Introduction
2. Materials and Methods
2.1. Algal and Cyanobacteria Isolates and Their Maintenance
2.2. DNA Extraction, PCR, and Sequencing
2.3. Phylogenetic Analyses
3. Results
3.1. SSU rRNA Gene Phylogeny
3.2. ITS Phylogeny
3.3. Morphological Observations
4. Discussion
4.1. Morphological vs. Molecular Species Determination
4.2. Taxa with Unclear Phylogenetic Positions
4.3. Congruence and Divergence of Phylogeny and Habitat Characteristics Regarding Salinity
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Original Strain | Integrated Approach | Morphological Approach [63] | Comments | Reference |
---|---|---|---|---|
Chlamydomonadales | ||||
NN-4-1-N N-4-1-E | Borodinellopsis texensis | Borodinellopsis texensis | SSU rRNA sequences of the original strains were close to the authentic strain (SAG 17.95). | [104,105] |
NN-2-N NN-2-D | Borodinellopsis sp. • | Borodinellopsis sp. | SSU rRNA sequences of the original strains formed a separate sister branch to the authentic strain of B. texensis (SAG 17.95). | [104,105] |
WT-3-1-F | Chloromonas sp. • | Radiosphaera negevensis | SSU rRNA sequence of the original strain formed a separate lineage within Chloromonas together with the strain Ru-6-8. | [65,106,107,108] |
NN-1-1-Q | cf. Axilosphaera • | Tetracystis sp. | SSU rRNA sequence of the original strain formed a separate clade close to Axilosphaera and Eubrownia. | [105] |
SY-1-2-T TT-3-1-Q (TSN3f) | cf. Chlorogonium • | Chlorococcum sp. 1 | SSU rRNA sequences of the original strains formed a separate lineage to Chlorogonium. | |
SY-4-1-C TT-3-1-M | cf. Spongiococcum • | Tetracystis sp. | SSU rRNA sequences of the original strains formed a separate lineage within the Moewusinia. | [105] |
(TTF-2-1-Da) | Alvikia sp. • | SSU rRNA sequences of the original strains formed a separate lineage within the Alvikia-clade. | [105] | |
Sphaeropleales | ||||
TT-3-1-J TT-3-1-U NN-4-1-D2 NN-4-1-CC NN-4-1-H (TTF-1-1-M) (TTF-2-1-A) (TTF-2-1-J) | Bracteacoccus minor | Bracteacoccus minor Bracteacoccus cohaerens Pseudomuriella aurantiaca | SSU rRNA and ITS2 sequences of the original strains were close to the authentic strain (UTEX 66). | [109] |
TT-3-1-G | Tetradesmus dissociatus | Spongiochloris excentrica | SSU rRNA and ITS sequences of the original strain were close to the authentic strain of Tetradesmus dissociatus. | [110,111] |
Ulvophyceae | ||||
TT-4-1-I | Desmochloris cf. halophila • | Spongiochloris excentrica | SSU rRNA and ITS sequences of the original strain were in an intermediate position between the authentic strain of D. halophila (CCAP 6006/1) and D. mollenhaueri (CCAP 6006/2), forming a separate branch. | [69,112,113] |
TT-4-1-D TT-4-1-M TT-4-1-O NN-4-1-Q NN-4-1-S NN-4-1-T | Halochlorococcum sp. • | Spongiochloris excentrica Spongiochloris sp. Chlorella sp. 1 Chlorococcum macropyrenoidosum | SSU rRNA sequences of the original strains clustered in the clade formed by Halochlorococcum species, but the absence of a taxonomic revision of the genus did not allow identification of the strains to species level. | [114,115] |
TT-3-1-I TT-4-1-J TT-4-1-CC TT-4-1-F (G2C) | Planophila sp. • | Chlorella sp. 2 Chlorella sp. 3 Chlorella vulgaris Planophila sp. 1 | SSU rRNA and ITS sequences of the original strains formed a separate lineage within Planophila, distant from known species. | [69] |
NN-4-1-B NN-4-1-M | cf. Chlorothrix • | Ulothrix aequalis | SSU rRNA and ITS sequences of the original strains formed a new lineage in the Acrosiphonia-clade of the Ulotrichales. | [113,116,117] |
Trebouxiophyceae | ||||
WT-3-1-L2 | Chlorella cf. pituita | Chlorella sp. 2 | SSU rRNA and ITS sequences of the original strain formed a separate branch from the authentic strain of C. pituita (ACOI 311). | [97] |
OD-1-1-C | Chloroidium saccharophilum | Chloroidium ellipsoideum | SSU rRNA and ITS sequences of the original strain were close to the authentic strain (SAG 211-9a). | [68,118] |
OD-1-2-N OD-1-1-K SY-1-2-B NN-2-O | Chloroidium sp. • | Chloroidium ellipsoideum | SSU rRNA and ITS sequences of the original strains fell on separate branches from C. lichinum and C. ellipsoideum. | [68,118] |
SY-1-2-K | Diplosphaera chodatii | Diplosphaera chodatii | SSU rRNA and ITS sequences of the original strain were close to the authentic strain (SAG 48.86). | [119] |
TT-2-1-CA1 TT-3-1-F NN-4-1-D (TTF-2-1-D) | Nannochloris sp. | Nannochloris sp. | SSU rRNA sequences of the original strains fell in two separate lineages within Nannochloris-like algae. No revision has addressed the polyphyletic positions of Nannchloris. | [101,120] |
TT-4-1-S (TSN1) (TSN3) | Pseudochlorella signiensis | Parietochloris cf. cohaerens | SSU rRNA and ITS sequences of the original strains were close to the authentic strain of P. signiensis (SAG 7.90). | [121] |
TT-4-1-K OD-1-1-X WT-3-1-P1 WT-3-1-A SY-1-2-P WT-3-1-H NN-1-1-X (TTF-3-1-BB) | Pseudosticho- coccus monallantoides | Stichococcus bacillaris Stichococcus exiguus Stichococcus allas | SSU rRNA and ITS sequences of the original strains were close to the authentic strain of P. monallantoides (SAG 380-1). | [119] |
NN-2-1-X1B OD-1-1 NN-1-1-E NN-1-1-M NN-1-1-L | Watanabea sp. | Parietochloris cohaerens Parietochloris cf. ovoideus | SSU rRNA and ITS sequences of the original strains formed a separate lineage within Watanabea. | [70] |
Cyanobacteria | ||||
SY-1-2-EE SY-1-2-Y | Cyanocohniella sp. | Nostoc sp. | SSU rRNA and ITS sequences of the original strains formed separate lineages close to Cyanocohniella. | [75,76] |
OD-1-1-T SY-4-1-H | Nodosilinea bijugata | Leptolyngbya sp. | SSU rRNA and ITS sequences of the original strains were close to the authentic strain of N. bijugata (Kovacik 1986/5a). | [122] |
NN-2-1-EE NN-3-1-CD TT-1-1-CA | Nodosilinea cf. signiensis | Leptolyngbya sp. | SSU rRNA and ITS sequences of the original strains were close to the authentic strain of N. signiensis (USMFM), but the clade thus formed was not statistically supported. | [123] |
OD-2-1-CH | Nodosilinea sp. • | Leptolyngbya sp. | SSU rRNA and ITS sequences of the original strain formed a separate lineage with the unidentified strain KIOST-1. | [122] |
NN-4-1-FF NN-3-1-CA NN-3-1-G NN-4-1-O | “Phormidesmis” sp. • | Pseudophormidium edaphicum Cyanobacteria 2 Cyanobacteria 5 | Unclear genus: no revision for the clade “Phormidesmis” present | [72] |
NN-3-1-B NN-3-1-D | “Pseudophormidium” battersii • | Cyanobacteria 5 Cyanobacteria 2 | Unclear genus: SSU rRNA sequences of the original strains formed a separate clade together with the strain KZ-16-2 previously identified as “Pseudophormidium” battersii. The group requires revision. | [72] |
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Sommer, V.; Mikhailyuk, T.; Glaser, K.; Karsten, U. Uncovering Unique Green Algae and Cyanobacteria Isolated from Biocrusts in Highly Saline Potash Tailing Pile Habitats, Using an Integrative Approach. Microorganisms 2020, 8, 1667. https://doi.org/10.3390/microorganisms8111667
Sommer V, Mikhailyuk T, Glaser K, Karsten U. Uncovering Unique Green Algae and Cyanobacteria Isolated from Biocrusts in Highly Saline Potash Tailing Pile Habitats, Using an Integrative Approach. Microorganisms. 2020; 8(11):1667. https://doi.org/10.3390/microorganisms8111667
Chicago/Turabian StyleSommer, Veronika, Tatiana Mikhailyuk, Karin Glaser, and Ulf Karsten. 2020. "Uncovering Unique Green Algae and Cyanobacteria Isolated from Biocrusts in Highly Saline Potash Tailing Pile Habitats, Using an Integrative Approach" Microorganisms 8, no. 11: 1667. https://doi.org/10.3390/microorganisms8111667