Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186

de Vogel, Fons A.; Schlundt, Cathleen; Stote, Robert E.; Ratto, Jo Ann; Amaral-Zettler, Linda A.

doi:10.3390/microorganisms9040744

Open AccessCorrection

Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186

by

Fons A. de Vogel

^1,2

,

Cathleen Schlundt

^3,†,

Robert E. Stote

⁴,

Jo Ann Ratto

⁴ and

Linda A. Amaral-Zettler

^1,3,5,*

¹

Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, P.O. Box 59, 1790 AB Den Burg, The Netherlands

²

Faculty of Geosciences, Department of Earth Sciences, Utrecht University, P.O. Box 80.115, 3508 TC Utrecht, The Netherlands

³

Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA 02543, USA

⁴

U.S. Army Combat Capabilities Development Command Soldier Center, 10 General Greene Avenue, Natick, MA 01760, USA

⁵

Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE Amsterdam, The Netherlands

^*

Author to whom correspondence should be addressed.

^†

Current address: GEOMAR, Helmholtz Center for Ocean Research, Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany.

Microorganisms 2021, 9(4), 744; https://doi.org/10.3390/microorganisms9040744

Submission received: 22 March 2021 / Accepted: 23 March 2021 / Published: 2 April 2021

(This article belongs to the Special Issue Microbes on Plastics, Close Encounters of the Fourth Kind)

Download Versions Notes

The authors wish to make the following corrections to this paper [1]:

1. Change to Section 3.1. Isolate Identification

The 16S rRNA gene sequences are deposited under GenBank accession numbers MW435594-MW435596 and in CPXXXXXXX-CPXXXXX. Associated metadata are specified in Supplementary Tables S9 and S10.

To the correct version, as follows:

The 16S rRNA gene sequences are deposited under GenBank accession numbers MW435594-MW435596 and in JAFKOK000000000, JAFKOJ000000000, JAFKOI000000000, and JAFKOH000000000. Associated metadata are specified in Supplementary Tables S9 and S10.

2. Change to Section 3.4. Whole-Genome Sequencing

The RASTtk annotated genomes are available online via https://rast.nmpdr.org/ by logging in as guest and can be found under ID numbers 6666666.521526 (Rhodobacter sp. NTK016B), 6666666.521528 (Bacillus sp. NTK034), 6666666.521530 (Bacillus sp. NTK071) and 6666666.521531 (Bacillus sp. NTK074B). The raw sequence reads are deposited in the NCBI Sequence Read Archive under BioProject PRJNA649735 with sample accession numbers SRR12354198 to SRR12354201. Annotated genomes are also deposited in INSDC under references CPXXXXXX-CPXXXXXX, and associated metadata are specified in Supplementary Table S10.

To the correct version, as follows:

The RASTtk annotated genomes are available online via https://rast.nmpdr.org/ by logging in as guest and can be found under ID numbers 6666666.521526 (Rhodobacter sp. NTK016B), 6666666.521528 (Bacillus sp. NTK034), 6666666.521530 (Bacillus sp. NTK071), and 6666666.521531 (Bacillus sp. NTK074B). The raw sequence reads are deposited in the NCBI Sequence Read Archive under BioProject PRJNA649735 with sample accession numbers SRR12354198 to SRR12354201. Assembled genomes are deposited in INSDC under references JAFKOK000000000, JAFKOJ000000000, JAFKOI000000000, and JAFKOH000000000, and associated metadata are specified in Supplementary Table S10.

3. Change to Data Availability Statement

The genome data obtained in this study can be found there under BioProject number PRJNA649735. More specifically, the raw genome sequence reads are deposited in the NCBI Sequence Read Archive with accession numbers SRR12354198-SRR12354201 and annotated genomes are deposited in INSDC under accession numbers CPXXXXXX-CPXXXXXX. The annotated genomes are also available online at RAST via https://rast.nmpdr.org/, when logging in with a guest-account. They can be found under ID numbers 6666666.521526, 6666666.521528, 6666666.521530, and 6666666.521531.

To the correct version, as follows:

The genome data obtained in this study can be found there under BioProject number PRJNA649735. More specifically, the raw genome sequence reads are deposited in the NCBI Sequence Read Archive with accession numbers SRR12354198-SRR12354201 and assembled genomes are deposited in INSDC under accession numbers JAFKOK000000000, JAFKOJ000000000, JAFKOI000000000, and JAFKOH000000000. The annotated genomes are available online at RAST via https://rast.nmpdr.org/, when logging in with a guest-account. They can be found under ID numbers 6666666.521526, 6666666.521528, 6666666.521530, and 6666666.521531.

4. Addition to Supplementary Table S8

Protein	NCBI Protein Accession	Species	Signal Peptide	Oxyanion Hole	Lipase Box	Catalytic Triad (S-H-A)	Reference
Hypothetical protein ◄	XXXXXX	Bacillus sp. NTK074B	1-22	57-57	119-123	121-223-256	This study
Hypothetical protein sed_3530	ABV38134	Shewanella sediminis HAW-EB3	1-23	67-73	160-164	162-269-331	[84]
Lipase A	P37957	Bacillus subtilisstrain 168	1-31	36-42	106-110	108-164-187	[85]
Lipase class 2	ABZ77296	Shewanella halifaxensis HAW-EB4	1-23	67-73	160-164	162-269-331	[84]
Lipase precursor ◄	XXXXXX	Vibrio alginolyticus ATCC 33787	1-23	33-39	104-108	106-253-275	This study
Lipase precursor ◄	XXXXXX	Vibrio proteolyticus NBRC 13287	1-23	35-41	106-110	108-255-277	This study
PhaZ7	Q939Q9	Paucimonas lemoignei	1-38	80-86	172-176	174-280-344	[86–88]
Thermostable lipase	Q842J9	Geobacillus zalihaeT1	1-28	37-43	139-143	141-345-386	[89,90]
Triacylglycerol lipase	WP_005101273	Acinetobacter multispecies	1-29	50-56	125-129	127-280-302	[91]
Triacylglycerol lipase	WP_005101276	Acinetobacter multispecies	1-23	44-50	120-124	122-267-289	[91]
Triacylglycerol lipase	WP_064094572	Acinetobacter multispecies	1-21	42-48	117-121	119-266-288	[91]
Triacylglycerol lipase	P22088	Burkholderia cepacianATCC 21808	1-44	54-60	129-133	131-308-330	[92,93]
Triacylglycerol lipase	Q05489	Burkholderia glumaeATCC 6918	1-39	49-55	124-128	126-302-324	[94,95]
Triacylglycerol lipase	P26876	Pseudomonas aeruginosaPAO1	1-26	35-41	106-110	108-255-277	[96,97]

To the correct version, as follows:

Protein	NCBI Protein Accession	Species	Signal Peptide	Oxyanion Hole	Lipase Box	Catalytic Triad (S-H-A)	Reference
Hypothetical protein ◄	MBN8191285	Bacillus sp. NTK074B	1-22	57-57	119-123	121-223-256	This study
Hypothetical protein sed_3530	ABV38134	Shewanella sediminis HAW-EB3	1-23	67-73	160-164	162-269-331	[84]
Lipase A	P37957	Bacillus subtilisstrain 168	1-31	36-42	106-110	108-164-187	[85]
Lipase class 2	ABZ77296	Shewanella halifaxensis HAW-EB4	1-23	67-73	160-164	162-269-331	[84]
Lipase precursor ◄	ALR91050	Vibrio alginolyticus ATCC 33787	1-23	33-39	104-108	106-253-275	Direct Submission (08-DEC-2015)
Lipase precursor ◄	GAD66740	Vibrio proteolyticus NBRC 13287	1-23	35-41	106-110	108-255-277	Direct submission (10-SEP-2013)
PhaZ7	Q939Q9	Paucimonas lemoignei	1-38	80-86	172-176	174-280-344	[86–88]
Thermostablelipase	Q842J9	Geobacillus zalihaeT1	1-28	37-43	139-143	141-345-386	[89,90]
Triacylglycerol lipase	WP_005101273	Acinetobacter multispecies	1-29	50-56	125-129	127-280-302	[91]
Triacylglycerol lipase	WP_005101276	Acinetobacter multispecies	1-23	44-50	120-124	122-267-289	[91]
Triacylglycerol lipase	WP_064094572	Acinetobacter multispecies	1-21	42-48	117-121	119-266-288	[91]
Triacylglycerollipase	P22088	Burkholderia cepacianATCC 21808	1-44	54-60	129-133	131-308-330	[92,93]
Triacylglycerollipase	Q05489	Burkholderia glumaeATCC 6918	1-39	49-55	124-128	126-302-324	[94,95]
Triacylglycerollipase	P26876	Pseudomonas aeruginosaPAO1	1-26	35-41	106-110	108-255-277	[96,97]

5. Addition to Table S10 (only Partly Shown):

NCBI BioProject number	PRJNA649735	PRJNA649735	PRJNA649735	PRJNA649735
NCBI BioSample number	SAMN15677905	SAMN15677906	SAMN15677907	SAMN15677908
NCBI SRA accession number	SRR12354201	SRR12354200	SRR12354199	SRR12354198
NCBI Genome accession number

To the correct version, as follows:

NCBI BioProject number	PRJNA649735	PRJNA649735	PRJNA649735	PRJNA649735
NCBI BioSample number	SAMN15677905	SAMN15677906	SAMN15677907	SAMN15677908
NCBI SRA accession number	SRR12354201	SRR12354200	SRR12354199	SRR12354198
NCBI Genome accession number	JAFKOK000000000	JAFKOJ000000000	JAFKOI000000000	JAFKOH000000000

The authors would like to apologize to the readers for any inconvenience caused by these changes.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.

Reference

De Vogel, F.A.; Schlundt, C.; Stote, R.E.; Ratto, J.A.; Amaral-Zettler, L.A. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186. [Google Scholar] [CrossRef] [PubMed]

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de Vogel, F.A.; Schlundt, C.; Stote, R.E.; Ratto, J.A.; Amaral-Zettler, L.A. Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186. Microorganisms 2021, 9, 744. https://doi.org/10.3390/microorganisms9040744

AMA Style

de Vogel FA, Schlundt C, Stote RE, Ratto JA, Amaral-Zettler LA. Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186. Microorganisms. 2021; 9(4):744. https://doi.org/10.3390/microorganisms9040744

Chicago/Turabian Style

de Vogel, Fons A., Cathleen Schlundt, Robert E. Stote, Jo Ann Ratto, and Linda A. Amaral-Zettler. 2021. "Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186" Microorganisms 9, no. 4: 744. https://doi.org/10.3390/microorganisms9040744

APA Style

de Vogel, F. A., Schlundt, C., Stote, R. E., Ratto, J. A., & Amaral-Zettler, L. A. (2021). Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186. Microorganisms, 9(4), 744. https://doi.org/10.3390/microorganisms9040744

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Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186

1. Change to Section 3.1. Isolate Identification

2. Change to Section 3.4. Whole-Genome Sequencing

3. Change to Data Availability Statement

4. Addition to Supplementary Table S8

5. Addition to Table S10 (only Partly Shown):

Conflicts of Interest

Reference

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