A Survey of Photoplethysmography and Imaging Photoplethysmography Quality Assessment Methods
Abstract
:1. Introduction
2. Background
2.1. PPG Signal and Its Application
- Extraction of physiological parameters, which can be illustrated by the extraction or estimation of physiological variables such as pulse rate, pulse rate variability, blood oxygen saturation [15], blood pressure [16], jugular venous pulse, respiration rate, cardiac output, arterial stiffness, left ventricular ejection time [10].
- Monitoring of patients by the screening PPG signals to follow their cardiovascular state. It allows the rise of alarms in case of the detection of abnormal situations such as fibrillation in intensive care units.
2.2. Measurement Factors Influencing a PPG Signal
- the environment: the external conditions in which the measurement is taken (e.g., temperature, pressure, ambient light, occurrence of a perturbation from the environment hiding the portion of skin in case of iPPG);
- the material: the portion of skin subjected to the measurement;
- the operator: the person performing the measurement;
- the equipment: the device used for the measurement (e.g., a pulse oximeter/smartwatch for PPG or a camera for iPPG);
- the methods: the physics behind the measurement and the algorithm dedicated to the extraction of the desired measurand and the protocol of measurement.
2.3. Physiological Factors Influencing a PPG Signal
3. Introduction to Signal Quality Index for Photoplethysmographic Signals
3.1. Definition of Quality
3.1.1. Metrological Quality
3.1.2. Physiological Quality
3.1.3. Annotation
- A PPG signal is a physiological signal, and evaluating its metrological quality needs the opinion of experts in the field. Consequently, the process of annotation can be expensive, and the annotation of large datasets is difficult.
- Because of its physiological nature, a PPG signal measured from a patient must be coherent with the physiological possibilities of the human body and with other physiological signals (e.g., ECG or continuous blood pressure). This coherence offers the possibility for the annotators to be guided
- –
- with a set of rules that the PPG signal must comply with;
- –
- with another physiological signal not affected by the perturbation.
3.2. Applications
- Reducing false alarms during patient monitoring;
- Presenting clean signals for experts’ interpretation;
- Cleaning datasets for machine learning applications;
- Suppressing irrelevant signals to maintain performance of physiological variable predictions;
- Integrating the SQI into the signal processing algorithm to evaluate or improve its performance.
3.2.1. Keeping or Removing PPG Signals
- Avoiding misinterpretation and false alarms from corrupted signals;
- Maintaining the performance of an application by keeping only relevant signals;
- Preparing an artifact-free dataset for the training and testing of a machine/deep learning estimator to achieve good performance [60].
3.2.2. Supporting the Signal Processing Chain
4. SQI for cPPG
4.1. Rule-Based
4.1.1. Criteria Based on Signal Features
4.1.2. Stability of the PPG Waveform
4.2. Machine Learning
4.3. Deep Learning
5. Design of SQI for iPPG
5.1. Existing Studies
- A camera is a widely used technology allowing remote and continuous monitoring of physiological variables (e.g., PR, PRV);
- This technology imposes less constraints on the patient as the signal can be taken remotely;
- Several potential applications exist for telemedicine (e.g., PR, blood pressure, blood oxygenation).
5.2. Potential Developments in This Domain
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
CNN | convolutional neural network |
DTW | dynamic time warping |
DWT | discrete wavelet transform |
HMM | hidden Markov model |
HR | heart rate |
HRV | heart rate variability |
ICA | independent component analysis |
LSTM | long short-term memory |
MLP | multi-layer perceptron |
PCA | principal component analysis |
POS | plane orthogonal to skin |
PPG | photoplethysmography |
cPPG | contact photoplethysmography |
iPPG | imaging photoplethysmography |
PR | pulse rate |
SNR | signal to noise ratio |
SQI | signal quality index |
SSR | spatial subspace rotation |
SVM | support vector machine |
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Measurement Factor | cPPG | iPPG |
---|---|---|
Means | Low resolution of the sensor | |
Inadequate sampling frequency of the sensor | ||
Clipping | ||
Sensor’s noise | ||
Power source interference [1] | Automatic exposition | |
Contact pressure [20] | Rolling shutter [21] | |
Irregular frame rate [21] | ||
Environment | Ambient light | |
Temperature [22] | ||
Low luminosity | ||
Nonstable environment (varying luminosity) | ||
Material | Motion artifacts | |
Presence of makeup [23] | ||
Ballistocardiographic artifacts [24] |
Physiological Factor | cPPG | iPPG |
---|---|---|
Measurement site | Impact on the shape of the PPG pulse [25] | |
Autonomic nervous system (sympathetic and parasympathetic) | Impact on the baseline of the signal [26] | |
Impact on pulse amplitude [7,27,28] | ||
Arterial stiffness | Impact on the waveform [29,30] | |
Impact on pulse wave velocity [29,30] | ||
Presence of disease (Arrythmia, premature ventricularcontraction, etc.) | Pulse to pulse interval [1,18] PPG waveform [7,18] | Pulse with multiple peaks (diabetes), incomplete pulses (arrythmia) [31] |
Respiration | Baseline wandering Modification of the waveform shape [25] Modification of frequency and amplitude of the AC component [29] | Modification of the pulse rate [32] |
Skin thickess | Lower PPG signal intensity and modification of the waveform [29] | |
Skin tone | Higher absorption of lower-wavelength light (green) [29] | Signal of lower amplitude and more subject to noise [33] |
Venous return | Affects both low-frequency components and AC components [29] |
References | Details | Annotation Type | |
---|---|---|---|
[35] | Evolution of PR between 2 pulses and sudden evolution of the value of the blood oxygenation. | Automatic annotation | |
[35,36,37,38] | Comparison between PR estimated from the PPG signal and the HR estimated from ECG. | ||
[39,40] | Comparison between stroke volume measured from cPPG and a reference taken from impedance cardiography. | ||
[40] | Comparison of left ventricular ejection time measured by a reference with the one measured by cPPG. | ||
[41] | Labelling by computing already existing quality indicators. | ||
[36,42,43,44,45,46,47,48,49,50] | Not Guided | Manual annotation | |
[51,52,53,54] | Guided | By rules | |
[55,56] | By reference signal | ||
[35,57,58,59] | Perturbations artificially created during recording |
Scale | Domain | Features | References | |
---|---|---|---|---|
Pulse | Temporal | Amplitude | Pulse amplitude | [44,45,68,69] |
Area under pulse | [44,45] | |||
Mean, std of pulse waveform | [35,37] | |||
Temporal | Pulse width | [44,45] | ||
Pulse rate | [36,70] | |||
Derivative | Ratio of maximum positive slope over minimum negative slope | [59] | ||
Spectral | Entropy | [51] | ||
Principal frequencies and residual noise | [69] | |||
Statistical | Skewness | [37,50,51,57,69] | ||
Kurtosis | [37,50,51,57,69] | |||
Inter-beat | Temporal | IBI | [35,37,46,59,71] | |
Successive IBI | [59] | |||
Inter-foot interval | [46] | |||
Amplitude difference between successive peaks (mean, std) | [35,37,44,45,46] | |||
Amplitude difference between successive feet | [46,69] | |||
Difference between pulse widths | [44,45] | |||
Difference between rising times | [44,45] | |||
Signal | Temporal | Amplitude of the signal | [48,72] | |
Difference between autocorrelation of PPG from red and infrared | [48] | |||
Ratio of oxygenated and deoxygenated blood measured | [48] | |||
Ratio between systolic and diastolic time | [35] | |||
Kurtosis | [58] | |||
Shannon entropy on signal amplitude distribution | [47,58] | |||
Shannon entropy on signal amplitude distribution | [47,58] | |||
Permutation and sample entropy | [73] | |||
Predictor (autoregressive model) coefficients fitted on 5 s signals | [66] | |||
Spectral | Variable-Frequency Complex Demodulation (VFCDM) | Residual noise | [36] | |
Projected frequency modulation difference | [36] | |||
Difference between PR and IBI | [36] | |||
Energy and amplitude of dominant frequencies in PR range | [74,75] | |||
Energy of non-dominant frequencies in PR range | [74] | |||
Variation of dominant frequencies with time | [75] | |||
Power spectrum | Variation of dominant frequencies with time | [37] | ||
Spectral entropy | [73] | |||
Hjort parameters | [37] | |||
Statistics | SNR | [47,51] | ||
Variance of the signal | [37] | |||
2 first peaks of correlogram of the signal | [47] | |||
First peak amplitude and time and number of zero crossing of the auto-correlation of the signal | [72] | |||
Detrended Fluctuation Analysis, Fractal Dimension, and Higuchi Fractal Dimension | [73] |
Reference | Data | Performance |
---|---|---|
[68] | 13 subjects | Cohen’s = 0.64 |
8 records of 1 min per subject | Sen = 0.89 | |
Spe = 0.77 | ||
Acc = 0.83 | ||
[58] | 24 subjects | Acc = 0.888 |
>134 min of recording | Sen = 0.869 | |
Spe = 0.983 | ||
[43] | Capnobase [83] | 90% of the signals with artifacts had a score |
Complex System Laboratory [84] | below 95/100 | |
14% of good-quality signals are labelled as | ||
artifacts for a score below 85/100 | ||
[65] | MIMIC II [82] | Evaluation by the impact on false alarm |
reduction with suppression | ||
[70] | Physionet/CinC 2011 | Sen = 0.91 |
+ author-collected database | Spe = 0.95 | |
[44,45] | 63 subjects | Performance of extended algorithm: |
31.5 h of annotated signals | Acc = 0.984 | |
Sen = 0.995 | ||
Spe = 0.916 | ||
Pre = 0.986 | ||
[77] | Capnobase [83] | Performance on Capnobase |
Complex System Laboratory [84] | for a threshold of 0.8: | |
Sen = 0.9664 | ||
PPV = 0.9926 | ||
[81] | 19 subjects (>5 min per record) | Mean performance (over authors’ dataset): |
+ PhysioNet MIMIC II | Acc = 0.935 | |
Sen = 0.869 | ||
Spe = 0.902 | ||
[53] | 3 subjects | Best performance: |
6 min records | Acc = 0.9258 | |
Sen = 0.9297 | ||
Spe = 0.9218 | ||
PPV = 0.9225 | ||
[48] | 14 subjects | Classification performance: |
158 records of 10 s | Acc = 0.9268 | |
Sen = 0.9286 | ||
Spe = 0.9245 | ||
Pre = 0.6420 | ||
F1-score = 0.9353 | ||
[79] | Capnobase [83] | Sen = 0.9466 |
Complex System Laboratory | PPV = 0.9678 | |
[66] | 15,000 records of 5 s from 3 different devices | Acc = 0.9321 |
+ MIMIC II [82] + Complex System | Sen = 0.9822 | |
Laboratory [84] + Wrist [85] + Cup [86] | Spe = 0.9071 | |
[72] | 19,700 segments of 4 s | Acc = 0.9989 |
Sen = 0.9994 | ||
Spe = 0.9939 |
Reference | Data | Machine Learning Method | Performance |
---|---|---|---|
[42] | 104 subjects, 1055 pulsations | MLP | Acc = 0.952 |
Sen = 0.990 | |||
Spe = 0.806 | |||
PPV = 0.952 | |||
[35] | 33 subjects | SVM + temporal neighbor voting | Mean performance on 3 artefacts |
(finger motion, head motion, walking): | |||
Acc = 0.938 | |||
Sen = 0.943 | |||
Spe = 0.924 | |||
[69] | 15 subjects | C-SVC | Mean performance: |
22 records of 1 min per subject | Acc = 0.885 | ||
Sen = 0.843 | |||
Spec = 0.915 | |||
[36] | 5 different datasets | SVM | Precision in the detection of the |
(Chon Lab and UMass Medical center) | occurrence time of a MNA | ||
Difference in Transit Time = 0.91 ± 0.59 s | |||
[52] | 13 subjects | SVM | Acc = 0.9033 |
Sen = 0.9505 | |||
Spe = 0.9163 | |||
[37] | 17 subjects | SVM | Acc = 0.984 |
24 h record per subject | Sen = 0.8550 | ||
Spe = 0.9184 | |||
[59] | 40 subjects | Fuzzy neural network | Mean performance: |
records of 1.5 to 2 min | Acc = 0.8992 | ||
Sen = 0.8421 | |||
Spe = 0.9363 | |||
[46] | 46 subjects | Test of 3 machine learning models: | Best score from SVM, mean performance: |
+ Capnobase dataset | Classification and regression tree, SVM, | Sen = 0.9576 | |
ensemble tree | Spe = 0.9190 | ||
PPV = 1 | |||
[47] | 26 subjects | Test of k-nearest neighbor, | Best score for random forest: |
multi-class SVM, Naïve Bayes, | Acc = 0.745 | ||
decision tree, random forest | |||
[39] | 10 subjects | Fuzzy neural network | Performance on detection of |
3 min per record | bad-quality pulses : | ||
Acc = 0.86 | |||
Pre = 0.97 | |||
Sen = 0.84 | |||
[73] | 30 subjects | Self-organizing map | Acc = 0.9201 |
10 min per subject | Sen = 0.9580 | ||
[50] | 5 subjects | Unsupervised elliptical envelope | Results of the leave-one-subject-out test |
12 min of recording per hour for | algorithm | in the classification of bad quality: | |
each subject during 6 days | Pre = 0.85 | ||
Sen = 0.98 |
Reference | Data | Entry | Deep Learning Architecture | Performance |
---|---|---|---|---|
[67] | 19 subjects | 30 s PPG signal + index | 3 CNN + 2 dense layers | Acc = 0.9002 |
1443 records of 30 s length | indicating motion detected by | AUC = 0.9521 | ||
the smartwatch accelerometer | ||||
injected into the dense part of | ||||
the network | ||||
[38] | 5 days data collection | 60 s signal window | 1 CNN + dense network | Best performance: |
AUC = 0.88 | ||||
Pre =0.7674 | ||||
Sen = 0.8354 | ||||
[55] | 2 private datasets | 2 entries are tested: | 1D entry: | Best performance (ResNet18): |
1D entry, 30 s of normalized | Attention LSTM ending with | Acc = 0.9851 | ||
PPG signal | dense network | Spe = 0.9791 | ||
2D entry, normalized RGB | Fully connected network | Sen = 0.9877 | ||
plot image of the signal | 2D entry: | |||
VGG19, Resnet18, Resnet50, | ||||
Xception | ||||
[40] | 14 subjects | 2D images of the plot of | ResNet50; VGG19 | Best performance (ResNet50): |
zero-padded PPG pulse and | Acc = 0.94 | |||
its derivative | Pre = 0.96 | |||
Sen = 0.92 | ||||
[49] | 183 subjects | Raw PPG signal | 1 CNN + 1 shared CNN | - |
+ 2 separated CNN with | ||||
dense layer | ||||
[91] | 38 subjects | 5 s of normalized PPG signal | 13 layers 1D CNN | Acc = 0.945 |
BIDMC and ICU dataset from | Sen = 0.967 | |||
MIMIC | Spe = 0.904 | |||
[54] | 76 subjects | PPG pulse signal converted to | 2D CNN + 1 dense | Acc = 0.975 |
recurrence plot | Sen = 0.964 | |||
Spe = 0.987 | ||||
[41] | PPG : | 5 points window of 64Hz | 3-unit LSTM + dense layer | Average Acc = 0.7973 |
DaLiA dataset [94] and | PPG signal | |||
Cuffless Blood Pressure | ||||
Estimation dataset [95] | ||||
iPPG: 6 subjects | ||||
[92] | 2 subjects | Discrete wavelet transform | Autoencoder used | Pre = 0.90 |
+ data augmentation | (DWT) approximation | Encoder : 1D CNN | Sen = 0.95 | |
coefficients from second level | + bidirectional LSTM layer | |||
of 6 s PPG signal | Decoder : LSTM layer | |||
+ dense layer | ||||
[56] | 44 subjects | 30 s bandpass-filtered signal | 1D U-Net (5 residual encoder, | Mean performance |
5 residual decoder) | DICE score = 0.8734 ± 0.0018 |
Scale | Domain | Features | References | |
---|---|---|---|---|
Pulse | Temporal | Amplitude | Difference between systole and diastole (pulse amplitude) | [101] |
Amplitude before and after perturbation for iPPG extracted by POS or SSR | [100] | |||
Template matching [70] | [99] | |||
Signal | Temporal | Std of the signal | [64,101] | |
Spectral | SNR (from frequency spectrum) | [63,97,98,99,101,102] | ||
Relative difference between highest and second highest amplitude of the signal spectrum | [101] | |||
Maximum scalar product between PPG periodogram [103] and predefined filters | [104] | |||
Probabilistic | SNR (obtained using HMM models) | [61] |
Reference | Data | Algorithm Type | Performance |
---|---|---|---|
[100] | 31 video records | Rule-based algorithm | Evaluated on contribution |
over HR estimation | |||
[61] | UBFC-RPPG dataset [105] | Hidden Markov Model | Evaluated on contribution |
over HR estimation | |||
[104] | 200,000 smartphone PPG | Rule-based algorithm | - |
records | |||
[36] | 5 different datasets | SVM | Evaluated on contribution |
(Chon Lab and | over HR estimation | ||
UMass Medical Center) | |||
[106] | 226 subjects | Fitting each pulse to a | Evaluated on impact on |
sinusoidal model using | error between HRV | ||
non-linear least square | estimated from PPG and | ||
optimization. If the fitting | ECG | ||
fails (i.e., no convergence or | |||
error high) or the model | |||
parameters are outside a | |||
statistical range, the pulse is | |||
bad-quality. | |||
[101] | Bingamton–Pittsburgh–RPI | Rule-based algorithm | Evaluated on contribution |
Multimodal Spontaneous | over HR estimation | ||
Emotion database [107] | |||
[41] | 6 subjects | 3-unit LSTM + dense layer | Evaluated on contribution |
+ augmentation with PPG | over HR estimation | ||
DaLiA dataset |
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Desquins, T.; Bousefsaf, F.; Pruski, A.; Maaoui, C. A Survey of Photoplethysmography and Imaging Photoplethysmography Quality Assessment Methods. Appl. Sci. 2022, 12, 9582. https://doi.org/10.3390/app12199582
Desquins T, Bousefsaf F, Pruski A, Maaoui C. A Survey of Photoplethysmography and Imaging Photoplethysmography Quality Assessment Methods. Applied Sciences. 2022; 12(19):9582. https://doi.org/10.3390/app12199582
Chicago/Turabian StyleDesquins, Théo, Frédéric Bousefsaf, Alain Pruski, and Choubeila Maaoui. 2022. "A Survey of Photoplethysmography and Imaging Photoplethysmography Quality Assessment Methods" Applied Sciences 12, no. 19: 9582. https://doi.org/10.3390/app12199582
APA StyleDesquins, T., Bousefsaf, F., Pruski, A., & Maaoui, C. (2022). A Survey of Photoplethysmography and Imaging Photoplethysmography Quality Assessment Methods. Applied Sciences, 12(19), 9582. https://doi.org/10.3390/app12199582