Untargeted Metabolomics Approach for the Differentiation between Panax vietnamensis var. vietnamensis and Panax vietnamensis var. fuscidiscus
Abstract
:1. Introduction
2. Materials and Methods
2.1. Reagents and Material
2.2. Sample Preparation
2.3. UPLC-QTOF-MS Analysis
2.4. UPLC-QTOF-MS Data Processing and Normalization
2.5. Multivariate and Machine Learning Analyses
2.6. Assessment of Sample Using ITS-rDNA Sequence Method
3. Results and Discussion
3.1. Authenticating the Origins of Vietnamse Ginseng by ITSr-DNA Sequence Data
3.2. Optimization of UPLC-QTOF-MS Approach for the Ginsenosides Profiling
3.3. Multivariate Analysis of the Metabolome Differences between PVV and PVF
3.4. Characterization of the Potential Differential Markers Using ROC Curve-Based Modeling
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Sample Availability
References
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Ginsenoside | Fold Change (PVV/PVF) | p-Value | False-Discovery Rate | VIP Score |
---|---|---|---|---|
Ginsenoside Rb1 | 2.00 | 1.20E-05 | 3.15E-05 | 0.71 |
Ginsenoside Rb2 | 0.12 | 5.03E-08 | 2.39E-07 | 1.62 |
Ginsenoside Rd | 2.23 | 3.77E-08 | 1.85E-07 | 0.87 |
Majonoside R1 | 0.31 | 3.47E-05 | 8.18E-05 | 0.84 |
Majonoside R2 | 1.39 | 5.31E-03 | 0.008724 | 0.41 |
Notoginsenoside Fa | 6.62 | 5.83E-09 | 3.47E-08 | 1.37 |
Notoginsenoside Fc | 0.03 | 9.39E-21 | 8.35E-19 | 2.07 |
Notoginsenoside R2 | 0.08 | 5.57E-13 | 1.03E-11 | 1.65 |
Notoginsenoside R4 | 0.20 | 8.89E-09 | 5.08E-08 | 2.09 |
Pseudoginsenoside Rs1 | 8.54 | 3.43E-10 | 2.70E-09 | 1.49 |
Quinquenoside R1 | 4.99 | 1.54E-11 | 1.81E-10 | 1.30 |
Vinaginsenoside R13 | 1.56 | 1.08E-05 | 2.87E-05 | 0.62 |
Vinaginsenoside R2 | 0.13 | 2.27E-24 | 1.45E-21 | 1.58 |
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Nguyen, H.T.; Phan, L.K.; Huynh, K.-L.V.; Duong, T.-H.; Le, H.T.; Hai-Yen, N.T.; Yen, N.T.H.; Long, N.P.; Nguyen, M.D. Untargeted Metabolomics Approach for the Differentiation between Panax vietnamensis var. vietnamensis and Panax vietnamensis var. fuscidiscus. Metabolites 2023, 13, 763. https://doi.org/10.3390/metabo13060763
Nguyen HT, Phan LK, Huynh K-LV, Duong T-H, Le HT, Hai-Yen NT, Yen NTH, Long NP, Nguyen MD. Untargeted Metabolomics Approach for the Differentiation between Panax vietnamensis var. vietnamensis and Panax vietnamensis var. fuscidiscus. Metabolites. 2023; 13(6):763. https://doi.org/10.3390/metabo13060763
Chicago/Turabian StyleNguyen, Huy Truong, Long Ke Phan, Kim-Long Vu Huynh, Thuc-Huy Duong, Huong Thuy Le, Nguyen Trang Hai-Yen, Nguyen Thi Hai Yen, Nguyen Phuoc Long, and Minh Duc Nguyen. 2023. "Untargeted Metabolomics Approach for the Differentiation between Panax vietnamensis var. vietnamensis and Panax vietnamensis var. fuscidiscus" Metabolites 13, no. 6: 763. https://doi.org/10.3390/metabo13060763
APA StyleNguyen, H. T., Phan, L. K., Huynh, K. -L. V., Duong, T. -H., Le, H. T., Hai-Yen, N. T., Yen, N. T. H., Long, N. P., & Nguyen, M. D. (2023). Untargeted Metabolomics Approach for the Differentiation between Panax vietnamensis var. vietnamensis and Panax vietnamensis var. fuscidiscus. Metabolites, 13(6), 763. https://doi.org/10.3390/metabo13060763