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Impact of Short-Term Liraglutide Therapy on Non-Invasive Markers of Liver Fibrosis in Patients with MASLD
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The Long-Term Impact of Preterm Birth on Metabolic Bone Profile and Bone Mineral Density in Childhood
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Prediagnostic Plasma Metabolomic Profiles Using NMR for Exfoliation Glaucoma Among US Health Professionals
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Human Metabolism of Sirolimus Revisited
Journal Description
Metabolites
Metabolites
is an international, peer-reviewed, open access journal of metabolism and metabolomics, published monthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, Embase, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q2 (Biochemistry and Molecular Biology) / CiteScore - Q2 (Endocrinology, Diabetes and Metabolism)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 14.4 days after submission; acceptance to publication is undertaken in 3.6 days (median values for papers published in this journal in the first half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
3.7 (2024);
5-Year Impact Factor:
4.1 (2024)
Latest Articles
Hexavalent Chromium Induces Defense Responses, Hepatocellular Apoptosis, and Lipid Metabolism Alterations in New Zealand Rabbit Livers
Metabolites 2025, 15(10), 637; https://doi.org/10.3390/metabo15100637 - 23 Sep 2025
Abstract
Background: Hexavalent chromium (Cr(VI)) can migrate into soil and water, posing risks to animal health. However, it remains unclear whether Cr(VI) perturbs essential trace elements and antioxidant gene expression, triggers apoptosis, or disrupts hepatic lipid metabolism in New Zealand rabbits. Methods:
[...] Read more.
Background: Hexavalent chromium (Cr(VI)) can migrate into soil and water, posing risks to animal health. However, it remains unclear whether Cr(VI) perturbs essential trace elements and antioxidant gene expression, triggers apoptosis, or disrupts hepatic lipid metabolism in New Zealand rabbits. Methods: To address this knowledge gap, twenty-four 30-day-old New Zealand rabbits were randomly allocated to one control and three Cr(VI)-treated groups (differing in Cr(VI) concentration) and maintained for 28 days. Livers were then harvested for analysis. Total Cr and essential trace elements were quantified by ICP-OES. Hematoxylin–eosin staining and transmission electron microscopy were employed to assess histopathological and ultrastructural alterations, respectively. Hepatic lipid accumulation was visualized with Oil Red O staining. QRT-PCR was used to determine the expression of antioxidant and lipid-metabolism-related genes. Results: Cr(VI) was detectable in liver tissue at all exposure levels and was accompanied by significant decreases in four essential trace elements (Fe, Mn, Zn, and Se); Cu displayed a biphasic response, rising at lower Cr(VI) doses before declining at higher doses. Histopathological and ultrastructural analyses revealed overt hepatic injury. Notably, all Cr(VI) treatments elevated antioxidant gene expression, indicating activation of hepatic defense pathways. Lipid metabolism was also disrupted, evidenced by increased lipid deposition and up-regulation of genes governing hepatic fat metabolism. Conclusions: Collectively, these findings demonstrate that Cr(VI) elicits dose-dependent activation of hepatic antioxidant defenses, promotes apoptosis, and induces lipid-metabolic disorders in New Zealand rabbit hepatocytes. This study provides novel mechanistic insights into Cr(VI)-induced hepatotoxicity and offers a valuable reference for evaluating the hepatic risks of environmental Cr(VI) exposure in this species.
Full article
(This article belongs to the Special Issue Animal Nutritional Metabolism and Toxicosis Disease, 2nd Edition)
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Open AccessArticle
NAD+-Dependent Lysine Acetylation Regulates Glucose Uptake and Fatty Acid Oxidation in Cardiomyocytes
by
Ettore Vanni and Christophe Montessuit
Metabolites 2025, 15(10), 636; https://doi.org/10.3390/metabo15100636 - 23 Sep 2025
Abstract
Background/Objectives: Stimulation of glucose uptake in response to ischemic stress is important for cardiomyocyte post-ischemic function and survival. In the diabetic myocardium chronically exposed to an excess of circulating lipids, this mechanism is impaired, making the myocardium more sensitive to ischemia–reperfusion injury (IRI).
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Background/Objectives: Stimulation of glucose uptake in response to ischemic stress is important for cardiomyocyte post-ischemic function and survival. In the diabetic myocardium chronically exposed to an excess of circulating lipids, this mechanism is impaired, making the myocardium more sensitive to ischemia–reperfusion injury (IRI). In vitro studies have shown that exposure to fatty acids (FAs) reduces basal and stimulated glucose uptake in cardiomyocytes. Preliminary results indicate reduced NAD+ levels and increased protein lysine acetylation in FA-exposed cardiomyocytes. This study aims to investigate whether intracellular NAD+ reduction is responsible for FA-induced increase in protein acetylation and impaired glucose uptake. Methods: Primary rat cardiomyocytes were chronically treated with the sirtuin deacetylase inhibitor nicotinamide (NAM) in absence of FAs to induce protein acetylation. Conversely, we replenished NAD+ concentration using nicotinamide riboside (NR) to induce protein deacetylation in FA-exposed cardiomyocytes. Results: Similar to FA exposure, NAM treatment increased protein acetylation and impaired metabolic-stress-stimulated glucose uptake in cardiomyocytes. In contrast, NR supplementation reduced protein acetylation and improved metabolic-stress-stimulated glucose uptake in FA-exposed cardiomyocytes. Neither NAM nor NR influenced insulin-stimulated glucose uptake. Both NAM and FAs induced hydroxyacyl-CoA dehydrogenase trifunctional enzyme subunit α (HADHA) acetylation on lysine residues K166 and K214 and enhanced palmitate oxidation. Conversely, NR treatment induced HADHA deacetylation and reduced palmitate uptake and oxidation in FA-exposed cardiomyocytes. Conclusions: In cardiomyocytes, protein hyperacetylation, resulting from either FA exposure or sirtuin inhibition, impairs metabolic-stress-stimulated glucose uptake and is associated with increased FA oxidation.
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(This article belongs to the Section Cell Metabolism)
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Open AccessArticle
Deciphering the Role of Different Ceramide Synthases in the Human Cardiomyocyte Hypertrophic Response
by
Alexandra M. Wiley, Melissa A. Krueger, Nona Sotoodehnia, Jason G. Umans, Andrew N. Hoofnagle, Rozenn N. Lemaitre, Rheem A. Totah and Sina A. Gharib
Metabolites 2025, 15(9), 635; https://doi.org/10.3390/metabo15090635 - 22 Sep 2025
Abstract
Background/Objectives: Recent studies suggest that plasma ceramide levels may be better predictors of CVD risk than LDL cholesterol. Ceramides are part of the sphingolipid class of lipids and are the central intermediates in complex sphingolipid biosynthesis. Sphingolipids are crucial for cellular structure
[...] Read more.
Background/Objectives: Recent studies suggest that plasma ceramide levels may be better predictors of CVD risk than LDL cholesterol. Ceramides are part of the sphingolipid class of lipids and are the central intermediates in complex sphingolipid biosynthesis. Sphingolipids are crucial for cellular structure and have important biological roles as complex signaling lipids, structurally and functionally differentiated by their acylated fatty acid. Higher plasma concentrations of 16:0 ceramide are associated with increased risk of heart failure. In contrast, higher concentrations of 22:0 plus 24:0 ceramide are associated with lower risk. We aim to address how alterations in these lipids can affect the human cardiac hypertrophic response. Methods: We silenced the ceramide synthase genes (CERS) responsible for the production of 16:0 ceramide (CERS5/6) or 22:0 and 24:0 ceramide (CERS2) in immortalized human ventricular cardiomyocytes and examined the altered cardiac hypertrophic response to phorbol 12-myristate 13-acetate treatment by examining changes in the transcriptome. Results: We discovered that silencing CERS2 or CERS5/6 drastically altered the cardiac cell hypertrophic response. We demonstrated that human cardiomyocytes with silenced CERS2 appeared to have an exacerbated hypertrophy response, while cardiomyocytes with silenced CERS5/6 had a more favorable response, suggesting that CERS2 and CERS5/CERS6 and their gene product metabolites may have opposing roles in the development and progression of CVD. Conclusions: The exact mechanisms through which various ceramides contribute to CVD progression are still unknown. This study will help elucidate the role of specific ceramides during cardiac hypertrophy and suggests that drugs targeting specific sphingolipids can potentially be a viable treatment option for the prevention of CVD.
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(This article belongs to the Special Issue Lipid Biomarkers and Cardiometabolic Diseases—2nd Edition)
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Open AccessArticle
Reducing False Positives in Newborn Screening: The Role of Perinatal Factors in the Dutch NBS Program
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Nils W. F. Meijer, Rose E. Maase, Patricia L. Hall, Wouter F. Visser, Klaas Koop, Annet M. Bosch, M. Rebecca Heiner-Fokkema, Monique G. M. de Sain‐van der Velden and the CLIR-NBS Group
Metabolites 2025, 15(9), 634; https://doi.org/10.3390/metabo15090634 - 22 Sep 2025
Abstract
Background/Objectives: Dutch newborn screening is an important public health program designed to detect conditions early in life, enabling timely interventions that can prevent mortality, morbidity, and long-term disabilities. However, the program also faces certain challenges. One such issue is obtaining and maintaining
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Background/Objectives: Dutch newborn screening is an important public health program designed to detect conditions early in life, enabling timely interventions that can prevent mortality, morbidity, and long-term disabilities. However, the program also faces certain challenges. One such issue is obtaining and maintaining a high positive predictive value (PPV); another is that newborn screening (NBS) in the Netherlands is intended for all newborn babies until the age of six months. This means comparing infants at different ages may introduce variability that complicates data interpretation. To support the optimization of the program, we systematically analyzed population-level tandem mass spectrometry (MS/MS) data to explore postnatal metabolic changes. Methods: We evaluated the impact of covariates—including birth weight, gestational age, age at blood collection, and biological sex—on metabolite profiles using retrospective newborn screening (NBS) data. Special emphasis was placed on the combined effects of these covariates. The analysis was based on data from 985,629 newborns collected between 2018 and 2024. Results: Specifically, (extremely) preterm infants exhibit altered levels of several amino acids and acylcarnitines. Moreover, we observed multiplicative effects of gestational age and birth weight on several metabolic markers. Biological sex however, does not have an impact. The largest impact of the age of sampling was observed on the C0/C16+C18 ratio, which may impact screening performance for CPT1 deficiency. Conclusions: Covariate-adjusted reference values could improve the performance of the Dutch newborn screening.
Full article
(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
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Open AccessArticle
Combination of Metabolomic Analysis and Transcriptomic Analysis Reveals Differential Mechanism of Phenylpropanoid Biosynthesis and Flavonoid Biosynthesis in Wild and Cultivated Forms of Angelica sinensis
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Yuanyuan Wang, Jialing Zhang, Yiyang Chen, Juanjuan Liu, Ke Li and Ling Jin
Metabolites 2025, 15(9), 633; https://doi.org/10.3390/metabo15090633 - 22 Sep 2025
Abstract
Objectives: Angelica sinensis is a type of traditional Chinese medicine (TCM) used primarily as a blood tonic. The chemical components that exert their efficacy are mainly bioactive metabolites, such as ferulic acid, flavonoids, and volatile oils. The resources of wild Angelica sinensis (WA)
[...] Read more.
Objectives: Angelica sinensis is a type of traditional Chinese medicine (TCM) used primarily as a blood tonic. The chemical components that exert their efficacy are mainly bioactive metabolites, such as ferulic acid, flavonoids, and volatile oils. The resources of wild Angelica sinensis (WA) are very scarce, and almost all the market circulation of TCM formulations relies on cultivated Angelica sinensis (CA). Some studies have shown that WA and CA differ in morphological features and chemical composition, but the reasons and mechanisms behind the differences have not been studied deeply. Methods: Herein, metabolomics analysis (MA) and transcriptomics analysis (TA) were used to reveal the differences in bioactive metabolites and genes between WA and CA. Expression of key genes was verified by real-time reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Results: Results showed that 12,580 differential metabolites (DMs) and 1837 differentially expressed genes (DEGs) were identified between WA and CA. Fourteen DMs (e.g., cinnamic acid, caffeic acid, ferulic acid, p-coumaroylquinic acid, and phlorizin) and 27 DEGs (e.g., cinnamic acid 4-hydroxylase (C4H), 4-coumarate-CoA ligase (4CL), shikimate O-hydroxycinnamoyltransferase (HCT), caffeic acid-O-methyltransferase (COMT), cinnamyl-alcohol dehydrogenase (CAD), flavonol synthase (FLS)) were screened in phenylpropanoid biosynthesis and flavonoid biosynthesis. A combined analysis of MA and TA was performed, and a network map of DMs regulated by DEGs was plotted. The results of real-time RT-qPCR showed that the transcriptome data were reliable. Conclusions: These findings provide a reference for further optimization of the development of WA cultivation and breeding of CA varieties.
Full article
(This article belongs to the Section Plant Metabolism)
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Open AccessArticle
Non-Invasive Detection of Nasopharyngeal Carcinoma Using Volatile Organic Compounds
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Chuan Hao Gui, Zhunan Jia, Alex Chengyao Tham, Khai Beng Chong, Zihao Xing, Fuchang Zhang, Fang Du, Yaw Khian Chong, Hao Li, Ernest Weizhong Fu, Jereme Yijin Gan, Agnes Si Qi Chew and Ming Yann Lim
Metabolites 2025, 15(9), 632; https://doi.org/10.3390/metabo15090632 - 22 Sep 2025
Abstract
Background: Nasopharyngeal carcinoma (NPC) is a leading head and neck cancer in Asia, where late-stage presentation contributes to poor survival. Non-invasive diagnostic strategies such as breath analysis may improve early detection. Objectives: This study aimed to investigate whether volatile organic compound (VOC) features
[...] Read more.
Background: Nasopharyngeal carcinoma (NPC) is a leading head and neck cancer in Asia, where late-stage presentation contributes to poor survival. Non-invasive diagnostic strategies such as breath analysis may improve early detection. Objectives: This study aimed to investigate whether volatile organic compound (VOC) features in exhaled breath, detected using proton transfer reaction mass spectrometry (PTR-MS), can distinguish NPC patients from healthy controls. Methods: Breath samples were collected from 50 NPC patients and 40 healthy controls. PTR-TOF-MS was used to measure exhaled VOC features. Group comparisons were performed using univariate analysis, while multivariable regression was adjusted for age, sex, BMI, smoking, and medication use. Multivariate methods, including principal component analysis (PCA) and random forest classification, were used to assess discriminatory potential. Results: Seven distinct VOC features (measured as m/z values) showed significant differences between NPC patients and healthy controls, with m089 and m175 emerging as the strongest markers of distinction. PCA after normalization revealed clearer separation between NPC patients and controls. Random forest models incorporating significant VOCs achieved moderate classification accuracy, and the results remained robust after adjusting for confounders. Conclusions: PTR-MS breath analysis can detect disease-specific VOC features in NPC and shows promise as a non-invasive diagnostic tool. Larger validation studies and definitive compound identification are needed to confirm clinical utility.
Full article
(This article belongs to the Special Issue Multiomics and Metabolism in Infectious Diseases and Cancer: Unveiling Novel Mechanisms and Biomarkers)
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Open AccessArticle
Ambient Mass Spectrometry Imaging Reveals Spatiotemporal Brain Distribution and Neurotransmitter Modulation by 1,8-Cineole: An Epoxy Monoterpene in Mongolian Medicine Sugmel-3
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Jisiguleng Wu, Qier Mu, Junni Qi, Hasen Bao and Chula Sa
Metabolites 2025, 15(9), 631; https://doi.org/10.3390/metabo15090631 - 22 Sep 2025
Abstract
Background/Objectives: 1,8-Cineole, an epoxy monoterpene, is a key volatile component of Sugmel-3, a traditional Mongolian medicine used for treating insomnia. Although previous studies suggest that 1,8-Cineole can cross the blood–brain barrier (BBB), its precise spatiotemporal distribution in the brain and its in situ
[...] Read more.
Background/Objectives: 1,8-Cineole, an epoxy monoterpene, is a key volatile component of Sugmel-3, a traditional Mongolian medicine used for treating insomnia. Although previous studies suggest that 1,8-Cineole can cross the blood–brain barrier (BBB), its precise spatiotemporal distribution in the brain and its in situ association with alterations in neurotransmitter (NT) levels remain unclear. This study utilized ambient mass spectrometry imaging (AFADESI-MSI) to investigate the dynamic brain distribution of 1,8-Cineole and its major metabolite, as well as their correlation with NT levels. Methods: Sprague Dawley rats (n = 3 per time point) received oral administration of 1,8-Cineole (65 mg/kg). Brain tissues were harvested 5 min, 30 min, 3 h, and 6 h post dose and analyzed using AFADESI-MSI. The spatial and temporal distributions of 1,8-Cineole, its metabolite 2-hydroxy-1,8-Cineole, key neurotransmitters (e.g., 5-HT, GABA, glutamine, melatonin), and related endogenous metabolites were mapped across 13 functionally distinct brain microregions. Results: AFADESI-MSI demonstrated rapid brain entry of 1,8-Cineole and its metabolite, with distinct spatiotemporal pharmacokinetics. The metabolite exhibited higher brain exposure, with 1,8-Cineole predominant in the cortex (CTX) and hippocampus (HP), while its metabolite showed pronounced accumulation in the pineal gland (PG), alongside CTX/HP. Region-dependent alterations in neurotransmitter levels (notably in PG, HP) correlated with drug concentrations, with observed increases in key molecules of the serotonergic and GABAergic pathways. Conclusions: Using AFADESI-MSI, this study provides the first spatiotemporal map of 1,8-Cineole and its metabolite in the brain. The correlation between their region-specific distribution and local neurotransmitter alterations suggests a direct mechanistic link to Sugmel-3′s sedative–hypnotic efficacy, guiding future target identification.
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(This article belongs to the Special Issue Mass Spectrometry Imaging and Spatial Metabolomics)
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Open AccessArticle
Metabolomic Profiling Reveals Distinct Signatures in Primary and Secondary Polycythemia
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Murat Yıldırım, Batuhan Erdoğdu, Selim Sayın, Ozan Kaplan, Emine Koç, Mine Karadeniz, Bülent Karakaya, Mustafa Güney, Mustafa Çelebier and Meltem Aylı
Metabolites 2025, 15(9), 630; https://doi.org/10.3390/metabo15090630 - 22 Sep 2025
Abstract
Background/Objectives: The differential diagnosis between primary polycythemia vera (PV) and secondary polycythemia (SP) presents significant clinical challenges owing to substantial phenotypic overlap. This investigation utilized untargeted metabolomic approaches to elucidate disease-specific metabolic perturbations and evaluate the metabolic consequences of cytoreductive therapeutic interventions.
[...] Read more.
Background/Objectives: The differential diagnosis between primary polycythemia vera (PV) and secondary polycythemia (SP) presents significant clinical challenges owing to substantial phenotypic overlap. This investigation utilized untargeted metabolomic approaches to elucidate disease-specific metabolic perturbations and evaluate the metabolic consequences of cytoreductive therapeutic interventions. Methods: Plasma specimens obtained from PV patients (n = 40) and SP patients (n = 25) underwent comprehensive metabolomic profiling utilizing liquid chromatography–mass spectrometry (LC-MS) platforms. Multivariate statistical analyses, including principal component analysis (PCA), were employed in conjunction with pathway enrichment analyses to characterize disease-associated metabolic dysregulation. Additionally, receiving treatment (tPV) (n = 25) and not receiving treatment (ntPV) (n = 15) PV patients were compared to assess therapeutic metabolic effects. Results: Comprehensive metabolomic analysis identified 67 significantly altered metabolites between PV and SP patients, with 36 upregulated and 31 downregulated in PV. Key upregulated metabolites in PV included thyrotropin-releasing hormone, 3-sulfinoalanine, nicotinic acid adenine dinucleotide, and protoporphyrin IX, while 4-hydroxyretinoic acid and deoxyuridine were notably downregulated. Pathway enrichment analysis revealed disruptions in taurine, glutamate, nicotinate, and cysteine metabolism in PV. ntPV patients exhibited higher glucose and octanoyl-CoA levels compared to treated patients, indicating the normalization of glucose and fatty acid metabolism with cytoreductive therapy. ntPV was also associated with altered B-vitamin metabolism, including decreased nicotinic acid adenine dinucleotide and increased nicotinamide ribotide levels. Cross-comparison analysis revealed overlapping pathway enrichment in glutamate metabolism, nicotinate and nicotinamide metabolism, and cysteine metabolism between both comparisons. Conclusions: This study demonstrates that PV and SP exhibit fundamentally distinct metabolic signatures, providing novel insights into disease pathogenesis and potential diagnostic biomarkers. The identification of oxidative stress signatures, disrupted energy metabolism, and altered B-vitamin cofactor pathways distinguishes PV from SP at the molecular level. Cytoreductive therapy significantly normalizes metabolic dysregulation, particularly glucose and nucleotide metabolism, validating current therapeutic approaches while revealing broader systemic treatment effects. The metabolic signatures identified, particularly the combination of deoxyuridine, thyrotropin-releasing hormone, and oxidative stress metabolites, may serve as complementary diagnostic tools to traditional morphological and molecular approaches. These findings advance our understanding of myeloproliferative neoplasm pathophysiology and provide a foundation for developing metabolically targeted therapeutic strategies and precision medicine approaches in PV management.
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(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
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Open AccessReview
Using Caprylic Acid for the Prevention and Treatment of Helicobacter pylori Infection and Gastric Cancer: A Review
by
Alexandra Balderrama-Gómez, Victor Manuel Muñoz-Pérez, Mario I. Ortiz, Raquel Cariño-Cortés, Javier Castro-Rosas, Abigail Betanzos, Eduardo Fernández-Martínez and Israel Castillo-Juárez
Metabolites 2025, 15(9), 629; https://doi.org/10.3390/metabo15090629 - 22 Sep 2025
Abstract
The present study investigates the bactericidal and anticancer potential of caprylic acid (CA) against Helicobacter pylori infection, a major global risk factor for gastric cancer. Several chronic inflammatory processes, bacterial virulence factors, and carcinogenic mechanisms—capable of inducing DNA damage in gastric epithelial cells,
[...] Read more.
The present study investigates the bactericidal and anticancer potential of caprylic acid (CA) against Helicobacter pylori infection, a major global risk factor for gastric cancer. Several chronic inflammatory processes, bacterial virulence factors, and carcinogenic mechanisms—capable of inducing DNA damage in gastric epithelial cells, promoting genomic instability, and contributing to the development of gastritis or peptic ulcer disease in susceptible individuals—remain incompletely understood. CA, a medium-chain fatty acid naturally found in plant and animal sources such as coconut oil and goat’s milk, possesses notable biological properties that may confer gastroprotective effects against gastric cancer induced by H. pylori. Despite advances in medical management, no universally effective strategy currently exists for the treatment or prevention of H. pylori–associated gastric cancer. Conventional therapies, including surgery, radiotherapy, and chemotherapy, often entail long-term complications that may affect patients’ nutritional status. In brief, further elucidation of the mechanisms underlying medium-chain fatty acid metabolism, particularly that of CA in gastric cancer cells, may yield valuable insights for the development of innovative therapeutic approaches. Consequently, the integration of CA into therapeutic dietary regimens and the formulation of nutraceuticals targeting H. pylori infection and related gastric pathologies warrant consideration. Therefore, CA could be considered a potential adjuvant in the preventive treatment of H. pylori–induced gastritis and its associated complications. However, further in vitro and in vivo studies are needed to confirm its beneficial use for this pathology.
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(This article belongs to the Section Plant Metabolism)
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Analysis of FsTyDC1 Gene from Forsythia suspensa in Response to Drought and Salt Stress Treatment
by
Jiaqi Xu, Jiaxi Chen, Meng Yuan, Panpan Wang, Wenwen Li, Yilong Li, Chong Yang, Shufang Lv, Zhanqiang Ma, Hongxiao Zhang, Huawei Xu, Xingli Zhao, Ting Wang and Dianyun Hou
Metabolites 2025, 15(9), 628; https://doi.org/10.3390/metabo15090628 - 19 Sep 2025
Abstract
Background: Forsythia suspensa (Thunb.) Vahl is a perennial deciduous shrub of the Oleaceae family. Its dried mature fruits are used as medicine and hold an important position in traditional Chinese medicine. Tyrosine decarboxylase (TyDC) is a key enzyme involved in the synthesis
[...] Read more.
Background: Forsythia suspensa (Thunb.) Vahl is a perennial deciduous shrub of the Oleaceae family. Its dried mature fruits are used as medicine and hold an important position in traditional Chinese medicine. Tyrosine decarboxylase (TyDC) is a key enzyme involved in the synthesis of dopamine in Forsythia suspensa. At the same time, it also affects the growth and development of this species under biotic stress. Methods: This study examined the expression and function of FsTyDC1 under drought and salt stress. The TyDC gene identified in F. suspensa, termed FsTyDC1, has an open reading frame (ORF) of 1518 bp. Results: qRT-PCR and subcellular localization analyses indicated that FsTyDC1 is highly expressed in F. suspensa fruit and its protein is located in the cytoplasm. The gene was silenced using a pTRV2-FsPDS/FsTyDC1 vector with virus-induced gene silencing. Following exposure to drought and salt stress, the leaves of FsTyDC1-silenced plants exhibited increased curling and wilting. Conclusions: The results indicate that FsTyDC1 responds to both salt and drought stress, which provides a foundation for further investigation into the function of FsTyDC1.
Full article
(This article belongs to the Special Issue Plant Biotic and Abiotic Stress Responses and Tolerance: Phytohormonal and Metabolic Insights)
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Open AccessReview
The Impact of Gut Microbial Metabolomics on Type 2 Diabetes Development in People Living with HIV
by
Yusnier Lázaro Díaz-Rodríguez, Elsa Janneth Anaya-Ambriz, Paula Catalina Méndez-Ríos, Jaime F. Andrade-Villanueva, Luz A. González-Hernández, Tania Elisa Holguín-Aguirre, Pedro Martínez-Ayala, Vida V. Ruiz-Herrera, Monserrat Alvarez-Zavala and Karina Sánchez-Reyes
Metabolites 2025, 15(9), 627; https://doi.org/10.3390/metabo15090627 - 19 Sep 2025
Abstract
Background/Objectives: HIV infection has been associated with an increased incidence of non-communicable comorbidities, including metabolic disorders. This phenomenon has been linked to gut microbiota dysbiosis, which involves not only changes in bacterial composition but also functional alterations in metabolite production. The objective of
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Background/Objectives: HIV infection has been associated with an increased incidence of non-communicable comorbidities, including metabolic disorders. This phenomenon has been linked to gut microbiota dysbiosis, which involves not only changes in bacterial composition but also functional alterations in metabolite production. The objective of this study was to describe the impact of intestinal microbial metabolomics on the development of type 2 diabetes in people living with HIV. Methods: This study provides a narrative synthesis of current evidence addressing the role of gut microbiota-derived metabolites in immunometabolic regulation and their implications in HIV-associated type 2 diabetes. Results: Microbial metabolites play a fundamental role in regulating key physiological processes such as intestinal permeability, systemic immune activation, and glucose metabolism. Compounds such as short-chain fatty acids, tryptophan catabolites, secondary bile acids, trimethylamine N-oxide, and imidazole propionate have been shown to significantly influence immunometabolic balance. In people living with HIV, these microbial products may exert diverse effects depending on their chemical nature and the molecular pathways they activate in peripheral tissues. The interaction between dysbiosis, chronic low-grade inflammation, and HIV-associated metabolic disturbances may contribute to the early onset of type 2 diabetes beyond traditional risk factors. Conclusions: Recognizing the role of microbial metabolites in the context of HIV infection is essential to broaden our pathophysiological understanding of associated metabolic comorbidities. It also opens opportunities to develop more comprehensive diagnostic and therapeutic strategies that include modulation of the gut microbiota and its metabolic activity for the prevention and management of type 2 diabetes in this population.
Full article
(This article belongs to the Special Issue Targeting Microbiota and Metabolites for Prevention and Treatment of Human Diseases)
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Essential Amino Acid Supplementation May Attenuate Systemic Inflammation and Improve Hypoalbuminemia in Subacute Hemiplegic Stroke Patients
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Mirella Boselli, Roberto Aquilani, Roberto Maestri, Paolo Iadarola, Alessandro Magistroni, Chiara Ferretti, Antonia Pierobon, Matteo Cotta Ramusino, Alfredo Costa, Daniela Buonocore, Marco Peviani, Federica Boschi and Manuela Verri
Metabolites 2025, 15(9), 626; https://doi.org/10.3390/metabo15090626 - 19 Sep 2025
Abstract
Background: Post-stroke inflammation and hypoalbuminemia can negatively affect neurocognitive recovery. This study evaluated whether oral amino acid (AA) supplementation with prevalently essential amino acids (EAAs, 82.1%) could improve inflammation and albumin levels in post-stroke patients undergoing neurorehabilitation. Methods: Sixty-four patients with subacute stroke
[...] Read more.
Background: Post-stroke inflammation and hypoalbuminemia can negatively affect neurocognitive recovery. This study evaluated whether oral amino acid (AA) supplementation with prevalently essential amino acids (EAAs, 82.1%) could improve inflammation and albumin levels in post-stroke patients undergoing neurorehabilitation. Methods: Sixty-four patients with subacute stroke (less than three 3 months from acute event) and elevated inflammation markers (C-reactive protein, CRP > 0.5 mg/dL) were enrolled. All underwent anthropometric assessments and blood tests for CRP (normal value < 0.5 mg/dL), albumin (normal range: 3.5–4.76 g/dL), prealbumin (18–32 mg/dL), and white blood cell count. Participants were randomly assigned to receive either oral EAAs (8.4 g/day) or placebo (maltodextrin, 8.4 g/day) for 55 days. Measurements were taken at baseline (T0) and at discharge (T1), approximately two months later. Results: At baseline, both groups had comparable levels of systemic inflammation, albumin and prealbumin: CRP, 2.13 ± 1.82 mg/dL (placebo) vs. 2.89 ± 2.12 mg/dL (EAAs), p = 0.13; albumin, 3.10 ± 0.46 g/dL (placebo) vs. 3.07 ± 0.57 g/dL (EAAs), p = 0.82; prealbumin, 18.3 ± 6.2 mg/dL (placebo) vs. 16.9 ± 3.9 mg/dL (EAAs), p = 0.28. During rehabilitation, only the EAA group showed significant reductions in CRP (p = 0.036 vs. placebo) and improvements in albumin (p = 0.033 vs. placebo) and prealbumin levels (p = 0.05 vs. placebo). However, full normalization of CRP and albumin was not achieved. Conclusions: This study demonstrates that a physiological dose of supplemented EAAs may attenuate, but not fully resolve, post-stroke inflammation and hypoalbuminemia. Further research is needed to determine whether higher EAA doses and/or modifications in EAA composition could enhance or normalize systemic inflammation.
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(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
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Open AccessArticle
Impact of Salivary Amino Acid Concentrations on 8 km Running Performance in Male Undergraduate Students: A Prospective Observational Study Based on HPLC
by
Hai Zhao, Kangwei Shen, Wei Fan, Mengjie Li and Xuejun Kang
Metabolites 2025, 15(9), 625; https://doi.org/10.3390/metabo15090625 - 19 Sep 2025
Abstract
Purpose: To explore the potential relationship between salivary amino acid concentrations and 8 km running performance in male undergraduate students. Methods: Thirty male undergraduate students were recruited. Participants completed an 8 km run while wearing smart bracelets. Saliva samples were collected before, immediately
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Purpose: To explore the potential relationship between salivary amino acid concentrations and 8 km running performance in male undergraduate students. Methods: Thirty male undergraduate students were recruited. Participants completed an 8 km run while wearing smart bracelets. Saliva samples were collected before, immediately after, and 24 h after the run. Ultra-High Performance Liquid Chromatography (UHPLC) was used to quantify salivary amino acids. Results: The fast group (average speed > 12.80 km/h) had a significantly shorter running time (35.66 ± 1.30 min, p < 0.001) and higher speed (13.59 ± 0.46 km/h, p < 0.001) than the slow group. Before the run, salivary serine concentration (20.19 µg/mL, p = 0.013) was higher in the fast group. After 24 h, salivary glutamine concentration (6.65 µg/mL, p = 0.047) was lower in the fast group. Salivary threonine concentration was positively correlated with running speed. For every 1 µg/mL increase in salivary threonine concentration, average running speed increased by 0.011 km/h, and this correlation persisted after adjusting for age and heart rate. Conclusions: This study found a positive correlation between salivary threonine and 8 km running speed, along with differences in serine and glutamine concentrations among runners with different speeds. These findings provide preliminary evidence for the relationship between salivary amino acid concentrations and running performance, though further research with larger samples and diverse exercise types is needed.
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(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
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Open AccessReview
Dietary Modulation of Metabolic Health: From Bioactive Compounds to Personalized Nutrition
by
Aleksandra Leziak, Julia Lipina, Magdalena Reclik and Piotr Kocelak
Metabolites 2025, 15(9), 624; https://doi.org/10.3390/metabo15090624 - 19 Sep 2025
Abstract
Metabolic health is a dynamic equilibrium influenced by diet and lifestyle. This review synthesizes evidence on how specific dietary patterns and bioactive nutrients modulate metabolic disorders. Diets like the Mediterranean and DASH plans consistently improve cardiometabolic markers: a Mediterranean diet can halve metabolic
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Metabolic health is a dynamic equilibrium influenced by diet and lifestyle. This review synthesizes evidence on how specific dietary patterns and bioactive nutrients modulate metabolic disorders. Diets like the Mediterranean and DASH plans consistently improve cardiometabolic markers: a Mediterranean diet can halve metabolic syndrome prevalence (~52% reduction) in as little as 6 months, while the DASH diet typically lowers systolic blood pressure by ~5–7 mmHg and modestly improves lipid profiles (LDL-C by ~3–5 mg/dL). Plant-based diets (vegetarian/vegan) are associated with lower BMI, improved insulin sensitivity, and reduced inflammation. Ketogenic diets induce rapid weight loss (~12% body weight vs. 4% on control diets) and improve glycemic control (reducing HbA1c and triglycerides), though long-term effects (elevated LDL) warrant caution. Bioactive compounds present in these diets play critical roles: polyphenols improve insulin signaling and reduce oxidative stress (resveratrol supplementation reduced HOMA-IR by ~0.5 units and fasting glucose by ~0.3 mmol/L); omega-3 fatty acids (fish oil) reduce triglycerides by ~25–30% and inflammation; and probiotic interventions modestly enhance glycemic control (lowering HOMA-IR and HbA1c) and gut health. Personalized nutrition approaches, which account for genetic and microbiome differences, are emerging to maximize these benefits. In conclusion, evidence-based dietary strategies rich in fiber, unsaturated fats, and phytochemicals can substantially improve metabolic health outcomes, underscoring the potential of tailored nutrition in preventing and managing obesity-related metabolic disorders.
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(This article belongs to the Special Issue Effects of Diet on Metabolic Health of Obese People)
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High-Intensity Interval Training (HIIT): Impact of Duration on Body Composition, Cardiometabolic Health, and Aerobic Capacity in Adolescent Women
by
Mima Stankovic, Ilma Čaprić, Luka Pezelj, Emir Biševac, Raid Mekić, Armin Zećirović, Zerina Salihagić, Aldina Ajdinović and Igor Jelaska
Metabolites 2025, 15(9), 623; https://doi.org/10.3390/metabo15090623 - 19 Sep 2025
Abstract
Background: High-intensity interval training (HIIT) is a time-efficient approach that has been recognized to enhance cardiometabolic health and aerobic capacity in adolescents. The purpose of this study was to investigate the effects of various HIIT durations on cardiometabolic health and aerobic ability in
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Background: High-intensity interval training (HIIT) is a time-efficient approach that has been recognized to enhance cardiometabolic health and aerobic capacity in adolescents. The purpose of this study was to investigate the effects of various HIIT durations on cardiometabolic health and aerobic ability in adolescent women aged 17 to 19 years. Methods: Participants were separated into two intervention groups: HIIT 1 (6 weeks) and HIIT 2 (8 weeks), along with a control group. Both HIIT regimens included two weekly sessions: warm-up (jogging, accelerated running, and dynamic stretching), major sets (2 × 6–9 bouts of 30 s training at 90–95% HRmax with active recovery), and cooldown. Pre- and post-intervention measurements included body mass, BMI, body fat percentage, lipid profile, blood pressure, fasting glucose, and VO2max. Results: Both HIIT programs resulted in significant reductions in body weight, BMI, and body fat percentage (all p < 0.001), as well as improvements in total cholesterol, triglycerides, LDL cholesterol, and systolic and diastolic blood pressure (all p < 0.001), compared to the control group. The changes in glycemia (p = 0.078) and HDL cholesterol (p = 0.825) were not statistically significant. Both HIIT groups showed significantly higher VO2max (p < 0.001). Conclusions: Adolescent women’s cardiometabolic health and aerobic capacity increased considerably following 6- and 8-week HIIT training. These findings emphasize HIIT as a practical and time-saving strategy for this population, highlighting its effectiveness in improving key health parameters within a relatively short period.
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(This article belongs to the Special Issue Effects of Various Exercise Methods on Metabolic Health)
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Open AccessArticle
Paradoxical Regulation of α7nAChR and NLRP3 Inflammasome in Gastrointestinal Cancers and Ulcerative Colitis
by
Gulten Ates, Ilker Ozgur and Ismail Cem Sormaz
Metabolites 2025, 15(9), 622; https://doi.org/10.3390/metabo15090622 - 18 Sep 2025
Abstract
Background: Gastrointestinal (GI) cancers are common and pose a major public health issue. An inflammatory microenvironment drives their development and progression. The α7nAChR receptor, known to suppress autoimmune and inflammatory bowel diseases, is also linked to colorectal cancer. It enhances anti-inflammatory activity, influences
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Background: Gastrointestinal (GI) cancers are common and pose a major public health issue. An inflammatory microenvironment drives their development and progression. The α7nAChR receptor, known to suppress autoimmune and inflammatory bowel diseases, is also linked to colorectal cancer. It enhances anti-inflammatory activity, influences tumor growth, metastasis, and treatment response, and is associated with tobacco use. NLRP3, a key inflammatory mediator, connects immunity and cancer. The α7nAChR receptor modulates tumorigenesis and therapy response by suppressing inflammatory pathways, while also regulating NLRP3 inflammasome activation through inhibition of mitochondrial DNA release. This study examines α7nAChR and NLRP3 expression in gastric and colorectal cancers, colitis, and normal tissues to clarify pathogenic mechanisms and identify therapeutic targets. Methods: Tissue samples of gastric tumor (S-Tm) (n = 10), colorectal tumor (C-Tm) (n = 10), colitis (UC) (n = 10), healthy stomach (S-C) (n = 10) and healthy colorectal tissue (C-C) (n = 10) taken during routine endoscopy protocols were homogenized. The α7nAChR and NLRP3 levels were examined using the ELISA method, and groups were compared. Results: We identified statistically significant differences in α7nAChR levels between the S-C and S-Tm (p < 0.05), C-C and C-Tm (p < 0.05), and S-C and C-Tm (p < 0.001) groups. The NRLP3 levels also differed significantly between the UC and C-Tm (p < 0.05), the S-C and C-Tm (p < 0.01), and the C-C and C-Tm groups (p < 0.01). Conclusions: Paradoxically, given the inflammatory regulatory role and oncogenic effects of α7nAChR, the relationship between α7nAChR and NLRP3 has become an important target for both oncological and inflammatory therapeutic approaches, particularly in inflammation-related GI cancers.
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(This article belongs to the Special Issue Metabolomic Insights: Interplay Between Metabolism and Immune Response in Cancer)
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Open AccessArticle
The Effect of 9-Week Dietary Intervention on Anthropometric Parameters and Blood Pressure in Children with Excessive Body Weight
by
Karolina Gajda, Marta Jeruszka-Bielak, Magdalena Górnicka, Irena Keser and Jadwiga Hamulka
Metabolites 2025, 15(9), 621; https://doi.org/10.3390/metabo15090621 - 18 Sep 2025
Abstract
Background/Objectives: The prevalence of pediatric overweight and obesity is steadily increasing, posing a tremendous problem and challenge to public health. Various strategies have been undertaken to combat this issue with mixed results. This study aimed at assessing the effect of a 9-week dietary
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Background/Objectives: The prevalence of pediatric overweight and obesity is steadily increasing, posing a tremendous problem and challenge to public health. Various strategies have been undertaken to combat this issue with mixed results. This study aimed at assessing the effect of a 9-week dietary intervention on anthropometric measurements and blood pressure among children aged 7–12 years with excessive body weight. Methods: The main aim of the intervention was to improve the children’s eating habits according to dietary guidelines for Polish children and adolescents with an individual approach and dietitian support. The intervention was completed by 68 children, 38 girls and 30 boys. Data on nutrition; anthropometrics, including body composition; and blood pressure were collected at baseline and after 3, 6, and 9 weeks of the dietary intervention. Results: The 9-week dietary intervention resulted in significant reductions in BMI z-score, fat mass, and body weight of 10.7%, 7.6%, and 4.0%, respectively. Blood pressure, especially diastolic blood pressure, also significantly decreased. Moreover, positive changes in dietary behaviors were noted. Conclusions: A 9-week dietary intervention based on an appropriate, high-quality diet in line with the Healthy Eating Pyramid guidelines, with individual counselling and constant monitoring of the implemented changes, an individual approach, support from a dietitian, and the involvement of parents or guardians, can be an effective tool for starting to improve the diets and health of overweight children.
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(This article belongs to the Special Issue Effects of Diet on Metabolic Health of Obese People)
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Open AccessArticle
NMR-Based Metabolomic Profiling Highlights Functional Nutritional Gaps Between Human Milk, Infant Formulas, and Animal Milks
by
Gaia Meoni, Leonardo Tenori, Giovanni Niero, Massimo De Marchi and Claudio Luchinat
Metabolites 2025, 15(9), 620; https://doi.org/10.3390/metabo15090620 - 18 Sep 2025
Abstract
Background/Objectives: Human milk represents the gold standard for infant nutrition, providing a complex and bioactive metabolite profile essential for early development. Despite efforts to enrich infant and toddler formulas with functional ingredients, significant biochemical differences persist. This study aimed to characterize and compare
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Background/Objectives: Human milk represents the gold standard for infant nutrition, providing a complex and bioactive metabolite profile essential for early development. Despite efforts to enrich infant and toddler formulas with functional ingredients, significant biochemical differences persist. This study aimed to characterize and compare the metabolomic composition of human milk, cow’s milk (both conventional and lactose-free), goat’s milk, and a variety of commercial formulas, including both infant (0–12 months) and toddler (1–3 years) formulations, using 1H NMR-based metabolomics. Methods: A total of 90 milk samples were analyzed, including eight formula milk brands, four human milk samples, four goat milk brands, and seven cow milk products. 1H NMR spectra were acquired and processed to identify 54 metabolites. Multivariate and univariate statistical analyses were used to assess compositional similarities and differences among milk types. Results: Human milk displayed a unique metabolic signature, enriched in fucosylated oligosaccharides (2′-FL, 3′-FL), N-acetylated carbohydrates, and amino acids such as glutamine and glutamate. Goat milk was characterized by higher levels of creatine, carnitine, and succinate, whereas cow milk showed elevated orotate, butyrate, and mannose. Formulations exhibited a relatively homogeneous composition across brands but differed from human and animal milk, particularly in choline, formate, and added micronutrients. Toddler formulas contained more energy-related compounds (e.g., creatine, maltose) compared to infant formulas. Conclusions: While modern formulas provide nutritional adequacy, they remain metabolically distinct from human milk. NMR-based metabolomics offers a powerful tool for guiding future improvements in formula composition toward more biomimetic profiles.
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(This article belongs to the Special Issue NMR-Based Metabolomics in Biomedicine and Food Science)
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Comparative Proteomic Analysis of Extracellular Vesicles from Donkey Colostrum and Mature Milk
by
Simonetta Caira, Sandra Buratta, Silvia Vincenzetti, Raffaella Latella, Matteo Seccaroni, Sabrina De Pascale, Cristina Federici, Luana Lugini, Stefano Giovagnoli, Anna Maria Salzano, Carla Emiliani, Andrea Scaloni and Elisabetta Chiaradia
Metabolites 2025, 15(9), 619; https://doi.org/10.3390/metabo15090619 - 18 Sep 2025
Abstract
Background/Objectives: Donkey milk (DM) has been considered a valuable alternative to human and bovine counterparts as well as to infant formulas. Milk extracellular vesicles (EVs) have been proposed to influence key biological processes. The purpose of this study is to provide a comprehensive
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Background/Objectives: Donkey milk (DM) has been considered a valuable alternative to human and bovine counterparts as well as to infant formulas. Milk extracellular vesicles (EVs) have been proposed to influence key biological processes. The purpose of this study is to provide a comprehensive characterization of the protein composition of extracellular vesicles (EVs) by extending quantitative proteomic comparisons to EVs derived from donkey colostrum (DC) and mature donkey milk (MDM). Methods: The EVs were isolated from DC and MDM samples, characterized, and subjected to proteomic analysis using the tandem mass tag-based quantitative approach. Results: In addition to typical milk proteins and EV markers, EVs from DC and MDM both contain components associated with the immune system, immune response, or promoting tissue repair, and assisting with communication between the infant and their environment. The EVs from DC were enriched in proteins associated with protein turnover, specific defense functions, and regenerative processes. Conclusions: Overall, the results can contribute to the broader characterization of the overall protein composition of DC and MDM and might help to predict the beneficial effects of the corresponding EVs on various mammalian cells. They may also provide valuable insights for the development of novel DM-based products for food, pharmaceutical, and biotechnological applications.
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(This article belongs to the Special Issue The Molecular Cargo of Extracellular Vesicles: A Key to Understanding Their Biological Role)
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Open AccessArticle
Yigong San Extract Modulates Metabolism, Antioxidant Status, and Immune Function to Improve Health in Diarrheic Calves
by
Sijuan Huang, Chao Han, Jianyu Lv, Xiaosong Zhang, Xuan Ni, Xin Wang, Jianfei Wang, Yunfei Ma and Zhihui Hao
Metabolites 2025, 15(9), 618; https://doi.org/10.3390/metabo15090618 - 18 Sep 2025
Abstract
Background/Objectives: Calf diarrhea is a serious health problem in dairy farming, which seriously affects their production performance in adulthood. Diarrhea in calves is usually treated with antibiotics, which may lead to issues of antibiotic residue and resistance. Therefore, finding antibiotic alternatives is of
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Background/Objectives: Calf diarrhea is a serious health problem in dairy farming, which seriously affects their production performance in adulthood. Diarrhea in calves is usually treated with antibiotics, which may lead to issues of antibiotic residue and resistance. Therefore, finding antibiotic alternatives is of critical importance. Yigong San (YGS) is a traditional Chinese medicine formula traditionally indicated for inflammatory gastrointestinal disorders. This study aimed to investigate whether YGS can be used as an alternative to antibiotics for the effective treatment of calf diarrhea and the underlying mechanisms. Methods: Ten healthy Holstein calves served as the control (Ctrl) group, while twenty diarrheic calves were randomly assigned to either a natural diarrhea (ND) group or a YGS treatment (YGS) group, which received YGS for seven days. Serum samples were collected post-treatment and analyzed for biochemical parameters, oxidative stress indicators, cytokine levels, and metabolomic profiles. Results: The results showed that YGS effectively alleviated diarrhea and improved abnormal biochemical indicators. YGS significantly increased serum levels of CAT, GSH-PX, and SOD, while reducing MDA levels. In addition, YGS also suppressed the expression of multiple proinflammatory cytokines, including IL-1α, TNF-α, IL-1β, IL-17A, IL-18, IL-21, IFN-γ, as well as chemokines CXCL9 and CXCL10. Metabolomic analysis revealed that YGS treatment significantly improved metabolic disorders and enriched the Arginine and Proline Metabolism pathways. The metabolites 1-methylhydantoin and ornithine were significantly and negatively correlated with pro-inflammatory cytokine levels. Conclusions: YGS effectively treats calf diarrhea by enhancing antioxidant capacity, reducing inflammatory factor levels, regulating immune function, and modulating serum metabolites. It provided valuable insights for the development of safe and effective antibiotic alternatives for preventing and treating calf diarrhea.
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(This article belongs to the Topic Recent Advances in Veterinary Pharmacology and Toxicology)
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