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Metabolites

Metabolites is an international, peer-reviewed, open access journal of metabolism and metabolomics, published monthly online by MDPI.
  • Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
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  • Journal Rank: JCR - Q2 (Biochemistry and Molecular Biology) / CiteScore - Q1 (Endocrinology, Diabetes and Metabolism)
  • Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 12.6 days after submission; acceptance to publication is undertaken in 3.7 days (median values for papers published in this journal in the first half of 2026).
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All Articles (6,928)

  • Review
  • Open Access

Bioactive Compounds from Cucurbita spp. and Their Processing By-Products: A Critical Review

  • Bela Kolarš,
  • Ivana Minaković and
  • Vesna Mijatović Jovin
  • + 4 authors

Pumpkin (Cucurbita spp.) processing generates peels, seeds, seed coats, pomace, and press cakes containing carotenoids, phenolics, proteins, unsaturated lipids, tocopherols, phytosterols, polysaccharides, and dietary fiber. This critical narrative review integrates composition and analytical characterization across anatomical fractions with extraction technologies, processing effects, biological evidence, and application readiness. Conventional extraction, pressing, supercritical carbon dioxide, deep eutectic solvents, enzyme-assisted extraction, ultrasound, microwaves, pulsed electric fields, and high-pressure homogenization differ in selectivity, recovery, and scalability. The reviewed evidence does not establish the environmental superiority of green extraction technologies without full process-level assessment. Processing can improve extractability or simulated bioaccessibility but also cause degradation or losses; concentration following water removal does not establish true retention. Experimental studies support potential antioxidant, anti-inflammatory, glycemia-related, antimicrobial, and antiproliferative activities, but most evidence remains chemical, cellular, or animal-based. Human evidence is preparation-specific and most developed for lower urinary tract symptoms; controlled evidence for glycemic and other systemic outcomes remains limited or inconsistent. Near-term opportunities include food ingredients, oils, protein fractions, pigment delivery, and selected packaging materials. Translation requires authenticated materials, validated analytical fingerprints, standardized preparations, safety and stability testing, adequately powered clinical trials for health-related claims, and mass, energy, economic, and life-cycle assessments.

Metabolites

8 October 2026

Representative routes linking Cucurbita tissues and processing by-products to extraction or processing methods, resulting products, and applications. (A) Selected extraction routes for carotenoid-rich extracts, seed oil, and phenolic-rich peel extracts [13,34,35,36]. (B) Direct processing of pomace into fiber-rich powders and seed oil press cake into composite packaging films [37,38].
  • Article
  • Open Access

Background/Objectives: This study examined urinary cholanoid profiles in a descriptive case series evaluated for suspected inborn errors of bile acid synthesis (IEBAS) or unexplained cholestasis. Methods: Urinary excretion of 66 bile acid metabolites was measured using liquid chromatography–tandem mass spectrometry (LC-MS/MS), and concentrations were interpreted as semi-quantitative estimates. In addition, cholesterol, cholestanol, and 7-dehydrocholesterol were analyzed by gas chromatography–mass spectrometry (GC-MS). Results: Five patients had genetically confirmed IEBAS: 3β-hydroxy-Δ5-C27-steroid dehydrogenase (HSD3B7) deficiency in 2 patients and cerebrotendinous xanthomatosis (CTX) in 3 patients. Two patients were subsequently diagnosed with biliary atresia and progressive familial intrahepatic cholestasis type 1. Other patients remained without a definitive etiological diagnosis. Of the two patients with genetically confirmed HSD3B7 deficiency, patient 1 showed a predominance of 3β-hydroxy-Δ5 bile acids (63.9% of total urinary bile acids), including sulfated dihydroxy-, glycine-conjugated dihydroxy-, and trihydroxy-Δ5 species. Patient 2 had an atypical urinary bile acid profile, with the 3β-hydroxy-Δ5 fraction dominated by a monohydroxy species. CTX patients had profiles with a different bile acid group composition; hydroxylated bile acids were reported in 2 patients, whereas no numerical result was reported for 1 patient. The 3β-hydroxy-Δ5 bile acid levels in 1 CTX patient were within the observed control range. Two patients also had differential profiles for hydroxylated and 3β-hydroxy-Δ5 bile acids, which provided biochemical findings for further etiological evaluation. The species assigned to glycoursodeoxycholic acid predominated in the urinary profiles of the five patients receiving ursodeoxycholic acid. Conclusions: Urinary cholanoid profiling may provide complementary biochemical information alongside the available clinical and genetic findings in the evaluation of suspected IEBAS.

Metabolites

8 October 2026

Bile acid synthesis pathways. Schematic representation of the classical/neutral and alternative/acidic pathways [6], together with the 25-hydroxylation and Yamasaki routes. Blue boxes represent intermediate metabolites, and green boxes indicate bile acid products. Arrows show the direction of the depicted conversions; enzyme names or reaction types are indicated alongside the arrows. Red labels identify inherited enzyme deficiencies. CTX, cerebrotendinous xanthomatosis; 3β-HSD, 3β-hydroxy-Δ5-C27-steroid dehydrogenase/isomerase; BAAT, bile acid CoA–amino acid N-acyltransferase; THCA, trihydroxycholestanoic acid; DHCA, dihydroxycholestanoic acid.
  • Review
  • Open Access

Exercise-induced fatigue refers to the reversible decline in neuromuscular function during physical activity, whose immune–metabolic regulatory mechanisms remain incompletely understood. Recent studies have revealed that B cells can regulate hepatic glutamate metabolism via secretion of transforming growth factor-β1 (TGF-β1), thereby influencing mitochondrial function in skeletal muscle, revealing a novel immune–metabolic pathway relevant to exercise-induced fatigue. This review synthesizes current evidence on immune regulation in exercise-induced fatigue, centering on the TGF-β1-driven glutamate axis linking the liver and skeletal muscle, cross-organ signaling, and hypotheses of central fatigue. We also discuss targeted interventions along this pathway to inform future basic research and clinical management of exercise-induced fatigue.

Metabolites

8 October 2026

B-cell–TGF-β1–liver–muscle glutamate axis in exercise-induced fatigue-regulation B cells secretes TGF-β1, which acts on hepatocytes to transcriptionally upregulate GLS2 and the amino acid transporter SLC7A5, thereby promoting glutamate synthesis and release in the liver. Glutamate enters skeletal muscle via the bloodstream, activates the Ca2+/CaMKII signaling pathway, and stimulates mitochondrial biogenesis, thus maintaining muscle contractile function and alleviating exercise-induced fatigue. Conversely, B-cell deficiency or liver-specific knockout of these key genes disrupts this metabolic axis, leading to insufficient glutamate supply and mitochondrial structural damage, thereby exacerbating exercise-induced fatigue. Upward arrows indicate upregulated expression or enhanced activity of corresponding molecules and pathways, while downward arrows indicate downregulated expression or impaired function.
  • Article
  • Open Access

Background: Preeclampsia (PE) is a multisystem pregnancy disorder associated with endothelial dysfunction, inflammation, and coagulation abnormalities. This study evaluated the fibrinogen-to-albumin ratio (FAR), platelet-to-albumin ratio (PAR), and creatinine-to-albumin ratio (CrAR) in relation to preeclampsia severity. Methods: This single-center retrospective case–control study included 205 pregnant women: 104 healthy controls, 70 patients with non-severe PE, and 31 with severe PE. Clinical, obstetric, neonatal, and laboratory data were reviewed. Group comparisons, receiver operating characteristic (ROC) analysis, and logistic regression adjusted for maternal age, body mass index, and gestational age at sampling were performed. Results: Fibrinogen and FAR were significantly higher in severe than in non-severe PE. Fibrinogen showed an area under the curve of 0.685, with 67.7% sensitivity and 58.6% specificity at a cut-off of 5.05 g/L. FAR showed an area under the curve of 0.657, with 67.7% sensitivity and 64.3% specificity at a cut-off of 0.143. Both fibrinogen and FAR remained independently associated with severe PE after adjustment for maternal age, body mass index, and gestational age at sampling. FAR did not demonstrate superior discriminatory performance compared with fibrinogen alone. PAR did not differ significantly among groups, while CrAR was higher in preeclampsia than in controls but did not discriminate severe disease. Conclusions: Fibrinogen and FAR were associated with severe PE but demonstrated only modest discriminatory performance. FAR did not outperform fibrinogen alone, and its incremental value beyond fibrinogen remains uncertain. Therefore, these findings should be considered exploratory and do not support the use of FAR or fibrinogen as standalone tools for clinical screening, risk stratification, or decision-making. Further prospective, multicenter studies are needed to determine whether these markers provide clinically meaningful value within broader multimodal assessment models.

Metabolites

7 October 2026

Receiver operating characteristic curves of FAR and CrAR for discriminating severe PE.

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Metabolites - ISSN 2218-1989