Serum Leptin Receptor and the rs1137101 Variant of the LEPR Gene Are Associated with Bladder Cancer
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Design and Subject Description
2.2. Blood Sample Collection
2.3. Biochemical Measurements
2.4. Genomic DNA Extraction
2.5. Genotyping of the Study Subjects
2.5.1. Genotyping Using PCR-RFLP
2.5.2. Genotyping Using Sanger Sequencing
2.6. Statistical Analysis
3. Results
3.1. Baseline Variables
3.2. Association of LEP and LEPR Genetic Variants with BC
3.3. Haplotype Association of the LEPR Gene with BC Risk
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Locus | SNP ID 1 | Location and Base Change | Forward Primer Reverse Primer | PCR 2 Program (34 Cycles) | PCR Product Size (bp) | Restriction Enzyme, Incubation Temperature, and Time | RFLP 3 Product (bp) |
---|---|---|---|---|---|---|---|
LEP | rs7799039 | Promoter (GA) | 5′GGGCTGGGAACTTTCTCTAAAG′3 5′CCTGACTTCCTGCAACATCT′3 | 95 °C for 3 min, 35 cycles of 30 s at 95 °C, 30 s at 58.8 °C, and 1 min at 72 °C | 276 | BtsIMutI, 55 °C, 1 h | GG: 276 GA: 276, 222, and 54 AA: 222 and 54 |
LEP | rs791620 | Regulatory region (CA) | 5′CTGGAGGGACATCAAGGATTT′3 5′AAGAAAGACCAGCAGAGAAGG′3 | 95 °C for 3 min, 35 cycles of 30 s at 95 °C, 30 s at 63.0 °C, and 1 min at 72 °C | 348 | AscI 37 °C, 1 h | AA: 348 CA: 348, 262, and 86 CC: 262 and 86 |
LEP | rs2167270 | 5′ UTR (GA) | 5′CTGGAGGGACATCAAGGATTT’3 5′AAGAAAGACCAGCAGAGAAGG′3 | 95 °C for 3 min, 35 cycles of 30 s at 95 °C, 30 s at 58.8 °C, and 1 min at 72 °C | 348 | HPYCH4III 37 °C, 1 h | GG: 348 GA: 348, 292, and 56 AA: 292 and 56 |
LEPR | rs1137101 | Exon 6 (AG) | 5′CTGTGCCAACAGCCAAACTC′3 5′ACAGAATTTAAGTGACAATGGCAGA′3 | 95 °C for 3 min, 35 cycles of 30 s at 95 °C, 30 s at 58.8 °C, and 1 min at 72 °C | 315 | BsrI 65 °C, 1 h | AA: 315 AG: 72, 170, and 242 GG: 72 and 170 |
Locus | SNP ID 1 | Location and Base Change | Forward Primer Reverse Primer | PCR Program (34 Cycles) | PCR Product Size (bp) | Sequencing Primer |
---|---|---|---|---|---|---|
LEPR | rs1137100 | Exon 4 variant (AG) | 5′TGCCTGCTGGACTCTCAAAG′3 5′AAGGTGTGTTTTTCTATTTCAAAGC′3 | 95 °C for 3 min, 35 cycles of 30 s at 95 °C, 30 s at 58.8 °C, and 1 min at 72 °C | 492 | 5′GCAAATTTAGAAGACTACAAGG′3 |
LEPR | rs1805094 | Exon 14 variant (GC) | 5′GTTCAGGTGCGCTGTAAGA′3 5′CTCCAAGAAACACTGCCTATCA′3 | 95 °C for 3 min, 35 cycles of 30 s at 95 °C, 30 s at 59.8 °C, and 1 min at 72 °C | 604 | 5′CTGAGGCCCAAAGAGTCTAA G′3 |
Variable | Control (n = 116) | Bladder Cancer (n = 116) | p-Value 1 |
---|---|---|---|
Gender (n) (%) | 0.66 | ||
Males | 103 (88.79%) | 100 (86.21%) | |
Females | 13 (11.21%) | 16 (13.79%) | |
Smoking (n) (%) | 0.08 | ||
Yes | 64 (55.17%) | 77 (66.38%) | |
No | 52 (44.83%) | 39 (33.62%) | |
DM 2 (n) (%) | 0.89 | ||
Yes | 42 (36.21%) | 43 (37.07%) | |
No | 74 (63.79%) | 73 (62.93%) | |
Age (years) | 60.60 ± 12.12 | 64.71 ± 12.40 | 0.01 |
BMI 3 (kg/m2) | 27.68 (5.43) | 28.10 (7.43) | 0.93 |
Leptin (ng/mL) | 12.12 (18.49) | 15.59 (15.44) | 0.04 |
Leptin/BMI 3 | 0.39 (0.67) | 0.58 (0.61) | 0.01 |
Leptin Receptor (ng/mL) | 29.05 (38.68) | 21.49 (24.53) | 0.001 |
Locus | SNP ID | Allele | Control n (%) | Bladder Cancer n (%) | p-Value 1 |
---|---|---|---|---|---|
LEP | rs7799039 | G A | 130 (56.0%) 102 (44.0%) | 160 (69.0%) 72 (31.0%) | 0.004 |
LEP | rs791620 | C A | 227 (97.8%) 5 (2.3%) | 220 (94.8%) 12 (5.2%) | 0.08 |
LEP | rs2167270 | G A | 151 (65.1%) 81 (34.9%) | 151 (65.1%) 81 (34.9%) | 1.00 |
LEPR | rs1137100 | A G | 225 (97.0%) 7 (3.0%) | 214 (92.2%) 18 (7.8) | 0.02 |
LEPR | rs1137101 | A G | 176 (76.0%) 56 (24.0) | 150 (64.7%) 82 (35.3%) | 0.008 |
LEPR | rs1805094 | G C | 175 (75.4%) 57 (24.6%) | 163 (70.3%) 69 (29.7%) | 0.21 |
Locus | SNP ID | Genotype | Control n (%) | Bladder Cancer n (%) | p-Value 1 |
---|---|---|---|---|---|
LEP | rs7799039 | GG GA AA | 41 (35.3%) 48 (41.4%) 27 (23.3%) | 55 (47.4%) 50 (43.1%) 11 (9.1%) | 0.01 |
LEP | rs791620 | CC CA AA | 112 (96.5%) 3 (2.6%) 1 (0.9%) | 106 (91.4%) 8 (6.9%) 2 (1.7%) | 0.29 |
LEP | rs2167270 | GG GA AA | 48 (41.4%) 55 (47.4%) 13 (11.2%) | 55 (47.4%) 41 (35.4%) 20 (17.2%) | 0.13 |
LEPR | rs1137100 | AA AG GG | 109 (93.9%) 7 (44.0%) 0 (6.0%) | 99 (85.3%) 16 (13.8%) 1 (0.9%) | 0.05 |
LEPR | rs1137101 | AA AG GG | 67 (57.8%) 42 (36.2%) 7 (6.0%) | 51 (43.9%) 48 (41.4%) 17 (14.7%) | 0.03 |
LEPR | rs1805094 | GG GC CC | 71 (61.2%) 33 (28.5%) 12 (10.3%) | 65 (56.0%) 33 (28.5%) 18 (15.5%) | 0.48 |
Variable | OR 1 | 95% CI 2 | p-Value 3 |
---|---|---|---|
Age (years) | 1.03 | 1.01–1.05 | 0.02 |
Leptin Receptor (ng/mL) | 0.98 | 0.97–0.99 | 0.002 |
rs1137101 | |||
AA | Reference | - | - |
AG | 1.51 | 0.85–2.70 | 0.16 |
GG | 3.42 | 1.27–9.20 | 0.02 |
LEP | rs7799039 | rs791620 | rs2167270 | Control | Bladder Cancer | OR 1 (95% CI) 2 | p-Value 3 |
1 | A | C | A | 0.13 | 0.05 | 0.34 (0.17–0.70) | 0.002 |
2 | A | C | G | 0.31 | 0.24 | 0.73 (0.49–1.10) | 0.13 |
3 | G | C | A | 0.21 | 0.29 | 1.60 (1.05–2.46) | 0.03 |
4 | G | C | G | 0.33 | 0.36 | 1.17 (0.80–1.72) | 0.42 |
LEPR | rs1137100 | rs1137101 | rs1805094 | Control | Bladder Cancer | OR 1 (95% CI) 2 | p-Value 3 |
1 | A | A | C | 0.24 | 0.24 | 1.03 (0.67–1.57) | 0.90 |
2 | A | A | G | 0.52 | 0.41 | 0.65 (0.45–0.94) | 0.02 |
3 | A | G | G | 0.21 | 0.24 | 1.231 (0.79–1.91) | 0.35 |
4 | G | G | G | 0.03 | 0.06 | 1.89 (0.74–4.85) | 0.18 |
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Share and Cite
Alfaqih, M.A.; Elsalem, L.; Nusier, M.; Mhedat, K.; Khader, Y.; Ababneh, E. Serum Leptin Receptor and the rs1137101 Variant of the LEPR Gene Are Associated with Bladder Cancer. Biomolecules 2023, 13, 1498. https://doi.org/10.3390/biom13101498
Alfaqih MA, Elsalem L, Nusier M, Mhedat K, Khader Y, Ababneh E. Serum Leptin Receptor and the rs1137101 Variant of the LEPR Gene Are Associated with Bladder Cancer. Biomolecules. 2023; 13(10):1498. https://doi.org/10.3390/biom13101498
Chicago/Turabian StyleAlfaqih, Mahmoud A., Lina Elsalem, Mohamad Nusier, Khawla Mhedat, Yousef Khader, and Ebaa Ababneh. 2023. "Serum Leptin Receptor and the rs1137101 Variant of the LEPR Gene Are Associated with Bladder Cancer" Biomolecules 13, no. 10: 1498. https://doi.org/10.3390/biom13101498
APA StyleAlfaqih, M. A., Elsalem, L., Nusier, M., Mhedat, K., Khader, Y., & Ababneh, E. (2023). Serum Leptin Receptor and the rs1137101 Variant of the LEPR Gene Are Associated with Bladder Cancer. Biomolecules, 13(10), 1498. https://doi.org/10.3390/biom13101498