Skip to Content
  • 5.6
    Impact Factor
  • 9.3
    CiteScore
  • 17 days
    Submission to First Decision
  • 4 days
    Acceptance to Publication

Biomolecules

Biomolecules is an international, peer-reviewed, open access journal on structures and functions of bioactive and biogenic substances, molecular mechanisms with biological and medical implications as well as biomaterials and their applications, published monthly online by MDPI.

Get Alerted

Add your email address to receive forthcoming issues of this journal.

All Articles (13,861)

  • Article
  • Open Access

Ankyrin repeat domain-containing protein 55 (ANKRD55) is genetically associated with multiple sclerosis, but its cellular function remains incompletely defined. To investigate its potential role in neuroinflammatory pathways, we mapped ANKRD55-interacting proteins in neuroblastoma, astrocytic, microglial, and monocytic cell lines by affinity purification–mass spectrometry. Across all four cell lines, 14-3-3 isoforms were the most reproducible partners, whereas the IMhu-M microglial interactome uniquely contained eight intraflagellar transport complex B (IFT-B) components. In visible immunoprecipitation assays, IFT46–IFT56 was the smallest tested IFT-B subassembly sufficient to support detectable association with ANKRD55. Confocal microscopy localized endogenous ANKRD55 to pericentriolar material and basal bodies, but not to primary cilia, and identified partial association with P-body markers. These data distinguish a conserved 14-3-3 interaction core from cell-restricted centrosomal/IFT-B and RNP-associated ANKRD55 pools.

Biomolecules

6 November 2026

Comparative analysis of ANKRD55 interactomes across four human cell lines. (A) Numbers of proteins assigned to categories A–D in three independent replicate experiments for each cell line. (B) The 20 highest-ranked proteins in the IMhu-A, IMhu-M, SH-SY5Y, and THP-1 interactomes. Proteins are ranked by category A–D and, within each category, by the mean NSAF T/C ratio across three independent replicates. Proteins absent from the control and detected only in transfected cells in one replicate were assigned an NSAF T/C ratio of 100 for that replicate; proteins absent from both samples in one replicate were assigned a value of 1. The number of replicates in which a protein was identified with more than one unique peptide is shown as “Num. Rep. > 1 Un. Pep.” Protein abundance is reported as NSAF (T − C). (C) Venn diagrams of ANKRD55-interactome proteins shared by two, three, or all four cell lines. The number of shared category A/B proteins is shown in bold, with the total number of shared category A–D proteins in brackets. Gene symbols are shown in bold italics for category A/B proteins and italics for category C/D proteins.
  • Article
  • Open Access

Hepatocellular carcinoma (HCC) ranks among the leading causes of cancer death, underscoring the pressing need for therapeutic agents with better efficacy and lower toxicity. Theaflavin (TF) is a polyphenol abundant in black tea that possesses broad-spectrum anti-tumor activity. However, the direct targets and molecular mechanisms of TF in HCC have not been completely defined. Here, reverse virtual screening was employed to predict candidate targets of TF, which were then validated by molecular docking, molecular dynamics (MD) simulation, drug affinity responsive target stability (DARTS), thermal shift assay (TSA) and endogenous fluorescence spectroscopy. The fluorescence titration results showed that TF could directly bind to CDK2, JNK1 and JNK2, with binding free energies of −37.08, −38.77 and −37.27 kJ/mol, and binding constants Ka of 3.16 × 106, 6.25 × 106 and 3.42 × 106 L⋅mol−1, respectively. TF inhibited the viability of HepG2, SK-Hep-1 and Huh-7 cells in a dose-dependent manner, enhanced reactive oxygen species (ROS) accumulation, reduced mitochondrial membrane potential, elevated the Bax/Bcl-2 ratio and activated caspase-9/3, thereby inducing apoptosis through the mitochondrial pathway. Moreover, TF induced G0/G1-phase arrest and curtailed cell migration and invasion, although the latter effects may be partly attributable to reduced cell viability. In nude mice bearing subcutaneous xenografts, TF markedly restrained tumor growth and promoted apoptosis. In summary, TF, a multi-target compound potentially interacting with CDK2 and JNK1/2, was associated with alterations in cell cycle- and MAPK-related signaling and may serve as a potential lead compound for HCC treatment.

Biomolecules

6 November 2026

Flowchart of the reverse virtual screening process carried out by the TF.
  • Review
  • Open Access

Manganese (Mn) is an essential trace element, but both insufficient cellular availability and excessive accumulation can disrupt neurological function. This narrative review integrates evidence from inherited Mn transporter disorders, common genetic variation, environmental epidemiology, and experimental models to examine potential links at the gene-environment interface. Biallelic pathogenic variants in SLC39A8, SLC30A10, and SLC39A14 provide direct human evidence that impaired Mn uptake, utilization, or clearance can cause distinct neurological and neurodevelopmental phenotypes. Environmental Mn studies in children mainly report associations with cognitive, motor, attentional, and behavioral outcomes, but findings vary according to exposure timing, biomarker, sex, nutritional status, co-exposure, and outcome definition. Evidence linking environmental Mn specifically to attention deficit hyperactivity disorder or autism spectrum disorder remains heterogeneous and observational. Experimental data suggest that Mn deficiency and excess involve partly distinct mechanisms, including altered glycosylation, mitochondrial and cellular dysfunction, iron-redox imbalance, ferroptosis-related responses, glial activation, and epigenetic or transcriptional changes. However, a causal Mn-epigenetic-neurodevelopmental pathway and a generalizable gene–environment interaction have not been established in humans. Advancing this field will require studies that integrate time-resolved exposure assessment, genetic and nutritional stratification, multi-omics, neuroimaging, and functional models.

Biomolecules

6 November 2026

Systemic Mn homeostasis at the gene–environment interface. Dietary Mn is absorbed through the intestine by incompletely resolved pathways. In the liver, SLC39A14 imports Mn from blood into hepatocytes, SLC30A10 exports Mn into bile, and SLC39A8 reclaims biliary Mn. SLC39A14 and SLC30A10 also cooperate in intestinal Mn excretion. Brain entry and cell-specific Mn transport involve several candidate pathways and remain incompletely resolved; these are shown with dashed arrows.
  • Review
  • Open Access

Advanced Combination Therapy in IBD

  • Maria Lisa,
  • Lucia Centanni and
  • Vipul Jairath
  • + 7 authors

Inflammatory bowel disease (IBD), including Crohn’s disease (CD) and ulcerative colitis (UC), is a chronic, immune-mediated condition characterized by considerable clinical and biological heterogeneity. Despite major advances in biologic therapies and small molecules, a considerable proportion of patients fail to achieve sustained clinical and endoscopic remission, highlighting the therapeutic ceiling of current treatment strategies. Increasing evidence suggests that treatment failure may result from the activation of multiple, partially overlapping inflammatory pathways that are not adequately controlled by single-agent therapy. Advanced combination therapy (ACT), defined as the concomitant use of two separate advanced targeted agents, either two biologics or a biologic and a small molecule, with complementary mechanisms of action, has emerged as a potential strategy to overcome these limitations, particularly in patients with refractory disease, extraintestinal manifestations, or concomitant immune-mediated inflammatory diseases. This narrative review, based on a PubMed literature search, summarizes the biological rationale, current clinical evidence, safety considerations, and practical applications of ACT in IBD. Available evidence, largely derived from heterogeneous observational studies and phase 2 randomized trials, suggests potential improvements in clinical and endoscopic outcomes in selected patients. However, the incremental benefit over individual targeted therapies has not been consistently demonstrated. Although available studies have not identified a clear increase in short-term serious adverse events, the evidence remains insufficient to establish long-term safety. Important uncertainties persist regarding optimal patient selection, treatment sequencing, duration, de-escalation strategies, and cost-effectiveness. While ACT represents a potentially valuable therapeutic option for selected patients with IBD, its use for active IBD remains largely off-label, and current evidence does not support routine implementation. Larger randomized trials and long-term studies are needed to better define its efficacy, safety, and clinical positioning.

Biomolecules

6 November 2026

Multi-Pathway Inhibition Through ACT in IBD. The different colors represent distinct inflammatory pathways: green indicates the TNF-α pathway, purple the IL-23/Th17 pathway, blue leukocyte trafficking, and orange JAK–STAT signaling. Red crosses indicate inhibition of the respective pathways. Simultaneous targeting of multiple inflammatory pathways may reduce compensatory inflammatory activation and promote broader inflammation control. Created using FigureLabs (https://www.figurelabs.ai/it; accessed on 24 June 2026).

Featured Articles of Last Quarter

Three-dimensional structural representations of molecular biosystems central to neurodegenerative diseases: (a) amyloid-β peptide, associated with extracellular plaque formation in AD, and (b) α-Synuclein fibrils forming the core of Lewy bodies in PD and related synucleinopathies. The fibrillar conformations shown illustrate the β-sheet–rich architectures that promote aggregation, seeding, and neurotoxicity. Structures were obtained from the RCSB Protein Data Bank (https://www.rcsb.org/3d-view/1IYT/0 and https://www.rcsb.org/3d-view/2N0A/0, respectively, both accessed on 11 December 2025).
NTD-ganglioside-induced conformational change in the Spike trimer. The three subunits of the Spike trimer are colored cyan, yellow, and purple. Each NTD is located at the periphery of the trimer. Following the binding of one NTD to a lipid raft enriched in gangliosides, a conformational change propagates throughout the involved subunit (the one in cyan in this example) until it reaches the neighboring subunit (colored yellow). Areas of the NTD whose conformation has been modified after interaction with the raft are indicated in red. Note that the conformational rearrangements affect distant domains of the NTD, including the contact zone with the neighboring subunit. This triggers the unmasking of the RBD of the yellow subunit, now able to bind the ACE-2 receptor. Overall, this process is functionally reminiscent of interfacial activation [60]. Trimeric structures in the closed pre-fusion conformation were constructed with Swiss-PdbViewer [61] by homology with a reference model (pdb: 6VSB) [62]. ACE2 and the spike trimer in the open conformation were from pdb 7DK3 [37]. Protein structures were generated with Molegro Molecular Viewer 2.5 (MMV, http://molexus.io/molegro-molecular-viewer/ accessed on 3 March 2025).
Methyltransferases (writers) and methylases (erasers) regulate cellular m6A levels. Different readers recognize m6A methylations and direct RNAs to various pathways.

Highly Accessed Articles

News & Conferences

Latest Issues

Open for Submission

Journal Sections

XFacebookLinkedIn
Biomolecules - ISSN 2218-273X