Evolutionary Dynamics of Satellite DNA Repeats across the Tettigoniidae Family: Insights from Genomic Analysis
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection, Next-Generation Sequencing, and NCBI Data Retrieval
2.2. Pre-Processing of the Genomic Data
2.3. RepeatExplorer2 and TAREAN Clustering Analysis
2.4. Satellite DNA Homology Search and RepeatMasker Analysis
3. Results
3.1. Repetitive Sequences Composition and Distribution
3.2. Satellite DNA Repeat Diversity in Family Tettigoniidae
3.3. Satellite DNA Gain and Loss in Family Tettigoniidae
3.4. Satellitome Landscape of Species of the Tettigoniidae Family
3.5. Chromosomal Distribution of Satellite DNA Repeats in M. thalassinum
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Majid, M.; Khan, H.; Liu, X.; Shaheer, M.; Huang, Y. Evolutionary Dynamics of Satellite DNA Repeats across the Tettigoniidae Family: Insights from Genomic Analysis. Biomolecules 2024, 14, 915. https://doi.org/10.3390/biom14080915
Majid M, Khan H, Liu X, Shaheer M, Huang Y. Evolutionary Dynamics of Satellite DNA Repeats across the Tettigoniidae Family: Insights from Genomic Analysis. Biomolecules. 2024; 14(8):915. https://doi.org/10.3390/biom14080915
Chicago/Turabian StyleMajid, Muhammad, Hashim Khan, Xuanzeng Liu, Muhammad Shaheer, and Yuan Huang. 2024. "Evolutionary Dynamics of Satellite DNA Repeats across the Tettigoniidae Family: Insights from Genomic Analysis" Biomolecules 14, no. 8: 915. https://doi.org/10.3390/biom14080915