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Article

A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in Pogostemon cablin in Response to p-HBA-Induced Continuous Cropping Obstacles

by
Yating Su
1,2,
Muhammad Zeeshan Ul Haq
1,
Xiaofeng Liu
1,2,
Yang Li
1,2,
Jing Yu
1,2,
Dongmei Yang
1,2,
Yougen Wu
1,2 and
Ya Liu
1,2,*
1
School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya 572025, China
2
School of Tropical Agriculture and Forestry, Hainan University, Danzhou 571737, China
*
Author to whom correspondence should be addressed.
Plants 2023, 12(22), 3901; https://doi.org/10.3390/plants12223901
Submission received: 22 September 2023 / Revised: 13 November 2023 / Accepted: 17 November 2023 / Published: 19 November 2023
(This article belongs to the Special Issue Plant Stress Physiology and Molecular Biology)
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Abstract

Casparian strip membrane domain protein-like (CASPL) genes are key genes for the formation and regulation of the Casparian strip and play an important role in plant abiotic stress. However, little research has focused on the members, characteristics, and biological functions of the patchouli PatCASPL gene family. In this study, 156 PatCASPL genes were identified at the whole-genome level. Subcellular localization predicted that 75.6% of PatCASPL proteins reside on the cell membrane. A phylogenetic analysis categorized PatCASPL genes into five subclusters alongside Arabidopsis CASPL genes. In a cis-acting element analysis, a total of 16 different cis-elements were identified, among which the photo-responsive element was the most common in the CASPL gene family. A transcriptome analysis showed that p-hydroxybenzoic acid, an allelopathic autotoxic substance, affected the expression pattern of PatCASPLs, including a total of 27 upregulated genes and 30 down-regulated genes, suggesting that these PatCASPLs may play an important role in the regulation of patchouli continuous cropping obstacles by affecting the formation and integrity of Casparian strip bands. These results provided a theoretical basis for exploring and verifying the function of the patchouli PatCASPL gene family and its role in continuous cropping obstacles.
Keywords: Pogostemon cablin; CASPL family; bioinformatics; Casparian strip; expression analysis Pogostemon cablin; CASPL family; bioinformatics; Casparian strip; expression analysis

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MDPI and ACS Style

Su, Y.; Zeeshan Ul Haq, M.; Liu, X.; Li, Y.; Yu, J.; Yang, D.; Wu, Y.; Liu, Y. A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in Pogostemon cablin in Response to p-HBA-Induced Continuous Cropping Obstacles. Plants 2023, 12, 3901. https://doi.org/10.3390/plants12223901

AMA Style

Su Y, Zeeshan Ul Haq M, Liu X, Li Y, Yu J, Yang D, Wu Y, Liu Y. A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in Pogostemon cablin in Response to p-HBA-Induced Continuous Cropping Obstacles. Plants. 2023; 12(22):3901. https://doi.org/10.3390/plants12223901

Chicago/Turabian Style

Su, Yating, Muhammad Zeeshan Ul Haq, Xiaofeng Liu, Yang Li, Jing Yu, Dongmei Yang, Yougen Wu, and Ya Liu. 2023. "A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in Pogostemon cablin in Response to p-HBA-Induced Continuous Cropping Obstacles" Plants 12, no. 22: 3901. https://doi.org/10.3390/plants12223901

APA Style

Su, Y., Zeeshan Ul Haq, M., Liu, X., Li, Y., Yu, J., Yang, D., Wu, Y., & Liu, Y. (2023). A Genome-Wide Identification and Expression Analysis of the Casparian Strip Membrane Domain Protein-like Gene Family in Pogostemon cablin in Response to p-HBA-Induced Continuous Cropping Obstacles. Plants, 12(22), 3901. https://doi.org/10.3390/plants12223901

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