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Phosphorylation of Plant Ferredoxin-like Protein Is Required for Intensifying PAMP-Triggered Immunity in Arabidopsis thaliana -
Plant Defense Proteins: Recent Discoveries and Applications -
The OsAP4-OsCATA/OsCATC Regulatory Module Orchestrates Drought Stress Adaptation in Rice Seedlings Through ROS Scavenging -
Harnessing Seed Endophytic Microbiomes: A Hidden Treasure for Enhancing Sustainable Agriculture -
The Effects of Frost and Fire on the Traits, Resources, and Floral Visitors of a Cerrado Plant, and Their Impact on the Plant–Visitor Interaction Network and Fruit Formation
Journal Description
Plants
Plants
is an international, scientific, peer-reviewed, open access journal on plant science published semimonthly online by MDPI. The Australian Society of Plant Scientists (ASPS), the Spanish Phytopathological Society (SEF), the Spanish Society of Plant Biology (SEBP), the Spanish Society of Horticultural Sciences (SECH) and the Italian Society of Phytotherapy (S.I.Fit.) are affiliated with Plants and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, PubAg, AGRIS, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q1 (Plant Sciences) / CiteScore - Q1 (Ecology, Evolution, Behavior and Systematics)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 17.7 days after submission; acceptance to publication is undertaken in 2.6 days (median values for papers published in this journal in the first half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
4.1 (2024);
5-Year Impact Factor:
4.5 (2024)
Latest Articles
Cross-Crop Transferability of Machine Learning Models for Early Stem Rust Detection in Wheat and Barley Using Hyperspectral Imaging
Plants 2025, 14(21), 3265; https://doi.org/10.3390/plants14213265 (registering DOI) - 25 Oct 2025
Abstract
Early plant disease detection is crucial for sustainable crop production and food security. Stem rust, caused by Puccinia graminis f. sp. tritici, poses a major threat to wheat and barley. This study evaluates the feasibility of using hyperspectral imaging and machine learning
[...] Read more.
Early plant disease detection is crucial for sustainable crop production and food security. Stem rust, caused by Puccinia graminis f. sp. tritici, poses a major threat to wheat and barley. This study evaluates the feasibility of using hyperspectral imaging and machine learning for early detection of stem rust and examines the cross-crop transferability of diagnostic models. Hyperspectral datasets of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) were collected under controlled conditions, before visible symptoms appeared. Multi-stage preprocessing, including spectral normalization and standardization, was applied to enhance data quality. Feature engineering focused on spectral curve morphology using first-order derivatives, categorical transformations, and extrema-based descriptors. Models based on Support Vector Machines, Logistic Regression, and Light Gradient Boosting Machine were optimized through Bayesian search. The best-performing feature set achieved F1-scores up to 0.962 on wheat and 0.94 on barley. Cross-crop transferability was evaluated using zero-shot cross-domain validation. High model transferability was confirmed, with F1 > 0.94 and minimal false negatives (<2%), indicating the universality of spectral patterns of stem rust. Experiments were conducted under controlled laboratory conditions; therefore, direct field transferability may be limited. These findings demonstrate that hyperspectral imaging with robust preprocessing and feature engineering enables early diagnostics of rust diseases in cereal crops.
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(This article belongs to the Special Issue Application of Optical and Imaging Systems to Plants)
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Exogenous Nitric Oxide Promotes the Growth and Cadmium Accumulation of Alfalfa (Medicago sativa) Seedlings Under Cadmium Stress
by
Yinping Chen, Yong Sun, Bo Cao, Maurice Ngabire, Yuzhi Lu, Qian Li and Qiaoling Yuan
Plants 2025, 14(21), 3264; https://doi.org/10.3390/plants14213264 (registering DOI) - 25 Oct 2025
Abstract
As an important bioactive signaling molecule, nitric oxide (NO) participates in the responses of plants to various environmental stresses. The aim of this study was to investigate the influence of exogenous NO on the growth and cadmium (Cd) accumulation of alfalfa (Medicago
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As an important bioactive signaling molecule, nitric oxide (NO) participates in the responses of plants to various environmental stresses. The aim of this study was to investigate the influence of exogenous NO on the growth and cadmium (Cd) accumulation of alfalfa (Medicago sativa) during early growth. The results showed that Cd significantly inhibited alfalfa seedling growth and induced membrane lipid peroxidation. Addition of sodium nitroprusside (SNP, as an NO donor) significantly promoted seedling growth and induced the mobilization of seed photosynthate reserves, leading to an increase in total soluble sugar (SS) and reducing sugar (RS) contents. Application of SNP mitigated membrane peroxidation damage caused by Cd stress by enhancing catalase (CAT), ascorbate peroxidase (APX), superoxide dismutase (SOD) and peroxidase (POD) activities in order to eliminate reactive oxygen species (ROS), thereby improving Cd resistance and increasing Cd accumulation in alfalfa. This promoting effect of SNP depended on its concentration; the most optimal SNP concentration to promote the growth and Cd absorption of alfalfa under Cd stress was found to be 200 µM. The fresh weight (FW), dry weight (DW) and Cd accumulation of seedlings treated with 200 µM SNP increased significantly by 23.10%, 30.32% and 82.50%, respectively, on the fifth day, compared with the Cd-only treatment.
Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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Lipoxygenase Inhibitory Activity and Prostate Cancer Cytotoxicity of In Situ- and In Vitro-Cultivated Balkan Endemic Sideritis scardica Griseb
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Kalina Danova, Jasmina Petreska Stanoeva, Elena Stoyanova, Kalina Alipieva, Marina Stefova and Ina Aneva
Plants 2025, 14(21), 3263; https://doi.org/10.3390/plants14213263 (registering DOI) - 25 Oct 2025
Abstract
Sideritis scardica Griseb., a Balkan endemic species traditionally used for respiratory conditions and wound-healing, was investigated for its 15-lipoxygenase (15-LOX) inhibitory and cytotoxic activities in relation to its phenolic composition. Aerial parts from the wild-collected and in vitro-cultivated plant were successively extracted with
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Sideritis scardica Griseb., a Balkan endemic species traditionally used for respiratory conditions and wound-healing, was investigated for its 15-lipoxygenase (15-LOX) inhibitory and cytotoxic activities in relation to its phenolic composition. Aerial parts from the wild-collected and in vitro-cultivated plant were successively extracted with hexane, chloroform, and methanol and the methanol extract was further fractionated into ethyl acetate, butanol, and water fractions. This study presents the first combined evaluation of LOX inhibition and cytotoxicity against prostate cell lines WPMY-1 (normal epithelial fibroblast/myofibroblast), PC-3 (epithelial adenocarcinoma, Grade IV), and LNCaP (epithelial carcinoma) and detailed phytochemical profiles of wild-collected and in vitro-cultivated S. scardica. The phytochemical analysis revealed distinct profiles: increased LOX-inhibition activity was related to a higher phenylethanoid/flavone glycoside ratio, while PC cytotoxicity was rather related to flavone glycoside domination in the plant preparations. The cytotoxic effect of the in vitro-obtained preparations was characterized by a marked selectivity when comparing their effects on WPMY-1, PC-3 and LNCaP cells. To our knowledge, this is the first report linking phenylethanoid/flavone glycoside profiles of in situ and in vitro S. scardica plants with dual LOX-inhibitory and anti-prostate cancer activities, supporting the plant’s potential as a sustainable source of bioactive compounds.
Full article
(This article belongs to the Special Issue Valuable Sources of Bioactive Natural Products from Plants, Third Edition)
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In Vitro Regeneration of Southern Italian Grapevine Cultivars from Embryogenic Calluses and Protoplasts
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Valeria Ereddia, Chiara Catalano, Fabrizio Salonia, Lara Poles, Edoardo Bertini, Sara Zenoni, Antonio Sparacio, Daniele Oliva, Elisabetta Nicolosi and Alessandra Gentile
Plants 2025, 14(21), 3262; https://doi.org/10.3390/plants14213262 (registering DOI) - 25 Oct 2025
Abstract
Efficiency in vitro regeneration is a crucial prerequisite for the application of New Nenomics Techniques (NGTs) in grapevine (Vitis vinifera L.) for improving resistance to biotic and abiotic stresses. This is especially true given that their management must be addressed sustainably, considering
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Efficiency in vitro regeneration is a crucial prerequisite for the application of New Nenomics Techniques (NGTs) in grapevine (Vitis vinifera L.) for improving resistance to biotic and abiotic stresses. This is especially true given that their management must be addressed sustainably, considering the impact of climate change. Unfortunately, in vitro plant regeneration and the establishment of embryogenic calluses are two genotype-dependent processes. Up to now, extensive research has been conducted on major international cultivars, whereas studies on the application of in vitro protocols for autochthonous cultivars remain limited. In this study, protocols for the acquisition of embryogenic calluses were applied on the most relevant Sicilian grapevine cultivars: the red-skinned ‘Frappato’, ‘Nerello mascalese’, and ‘Nero d’Avola’, and the white-skinned ‘Grillo’, ‘Carricante’, and ‘Catarratto’. Stamens and pistils were cultured in two different induction media (PIV and MSII) and at three stages (mother cells in the late premeiotic phase, tetrads, and mature pollen) to induce embryogenic calluses. Five thousand explants per cultivar were cultured, forming calluses in four selected cultivars. Plantlets were successfully generated from calluses of ‘Carricante’, ‘Frappato’, and ‘Nero d’Avola’. Moreover, protoplasts were isolated from ‘Frappato’ and ‘Nero d’Avola’. Our results establish a critical foundation for developing successful regeneration protocols for the future application of NGTs in Sicilian grapevine cultivars.
Full article
(This article belongs to the Special Issue Advances and Applications in Plant Tissue Culture—2nd Edition)
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Effectiveness of Soil, Foliar, and Seed Selenium Applications in Modulating Physio-Biochemical, and Yield Responses to Drought Stress in Vegetable Soybean (Glycine max L. Merrill)
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Masego Sekhurwane, Brigitta Tóth and Makoena Joyce Moloi
Plants 2025, 14(21), 3261; https://doi.org/10.3390/plants14213261 (registering DOI) - 24 Oct 2025
Abstract
Drought stress severely affects the physio-biochemical processes and yield of nutritious crops like vegetable soybean (Glycine max L. Merrill), threatening global food security and emphasising the need for effective strategies to improve drought tolerance. This study, conducted under controlled conditions in a
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Drought stress severely affects the physio-biochemical processes and yield of nutritious crops like vegetable soybean (Glycine max L. Merrill), threatening global food security and emphasising the need for effective strategies to improve drought tolerance. This study, conducted under controlled conditions in a greenhouse, investigates the effects of three selenium application methods (seed priming, foliar spray, and soil application) on photosynthesis efficiency, relative water content (RWC), hydrogen peroxide (H2O2), antioxidative responses, and yield traits of two vegetable soybean cultivars, UVE14 (drought-tolerant) and UVE17 (drought-susceptible), under drought stress. Among the three Se application methods, soil application was the most effective in improving drought tolerance and yield performance in both cultivars. In UVE17 (drought-susceptible), soil application significantly increased the number of seeds per plant (SPP) and the number of pods per plant (PPP), while in UVE14 (drought-tolerant) SPP increased. Selenium foliar spray and seed priming treatments did not increase yield in drought-stressed UVE14, suggesting that they are unlikely to further enhance tolerance in drought-tolerant cultivars. For UVE17 under drought conditions, selenium soil application improved key physio-biochemical indicators of drought tolerance, including photosynthesis efficiency (total performance of photosystems I and II, total chlorophyll content, and stomatal conductance), water retention (RWC), and carotenoid content. These improved physio-biochemical responses directly impacted yield outcomes. Notably, RWC and total chlorophyll content at the pod-filling stage in drought-stressed UVE17 were positively correlated with an increase in PPP under selenium soil application. Selenium soil application stands out as the most effective method for enhancing drought tolerance in vegetable soybean, presenting a promising and practical solution for enhanced crop production under climate change.
Full article
Open AccessArticle
Molecular Characterization of Tissue-Specific Anthocyanin Biosynthesis in Potato Stamens
by
Sunjin Li, Zongming Guo, Xing Zhang and Huachun Guo
Plants 2025, 14(21), 3260; https://doi.org/10.3390/plants14213260 (registering DOI) - 24 Oct 2025
Abstract
While stamen-focused research has predominantly examined flowering ornamental species, the tissue-specific regulatory mechanisms governing anthocyanin biosynthesis in potato stamens remain poorly understood. To characterize the tissue-specific regulatory mechanisms controlling anthocyanin biosynthesis in potato reproductive and storage organs, this investigation employed the red stamen
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While stamen-focused research has predominantly examined flowering ornamental species, the tissue-specific regulatory mechanisms governing anthocyanin biosynthesis in potato stamens remain poorly understood. To characterize the tissue-specific regulatory mechanisms controlling anthocyanin biosynthesis in potato reproductive and storage organs, this investigation employed the red stamen mutant line ‘BF1811-8’ and the commercial cultivar ‘Atlantic’ as experimental models. Anthocyanin composition and quantification were determined using high-performance liquid chromatography (HPLC), while RNA-sequencing coupled with quantitative real-time PCR validation enabled comprehensive analysis of differential gene expression patterns within the anthocyanin biosynthetic pathway. Biochemical analysis revealed complete absence of anthocyanins across all examined tissues in ‘Atlantic’, whereas ‘BF1811-8’ exhibited tissue-specific anthocyanin profiles: stamens accumulated delphinidin and pelargonidin, while tuber skin and flesh primarily contained pelargonidin and peonidin. Gene ontology and KEGG pathway enrichment analysis of differentially expressed genes identified significant representation within secondary metabolism, flavonoid biosynthesis, and pigmentation processes. The transcription factors StMYB4 and StMYBA1 demonstrated positive regulatory roles in anthocyanin biosynthesis within tuber flesh and skin, respectively, while exhibiting coordinated expression with structural genes including CHS, DFR, ANS, and GST. Notably, StbHLH94 showed stamen-specific regulatory activity and demonstrated transcriptional co-regulation with 3GT. These findings provide crucial insights into the tissue-specific regulatory architecture governing potato anthocyanin biosynthesis, establishing a foundation for elucidating molecular mechanisms underlying tissue-specific pigmentation and advancing functional cultivar development.
Full article
(This article belongs to the Special Issue Genetics and Physiology of Tuber and Root Crops)
Open AccessArticle
Overexpression of SlMADS48 Alters the Structure of Inflorescence and the Sizes of Sepal and Fruit in Tomato
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Pengyu Guo, Xin Cheng, Chuanji Xing, Zihan Gao, Jing Xue, Xiuhai Zhang, Guoping Chen, Xuqing Chen and Zongli Hu
Plants 2025, 14(21), 3259; https://doi.org/10.3390/plants14213259 (registering DOI) - 24 Oct 2025
Abstract
MADS-box transcription factors play a vital role in the development of reproductive organs and fruits. However, the mechanisms by which MADS-box transcription factors participate in determining the size of organs remain incompletely understood. This study demonstrated that the overexpression of SlMADS48 results in
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MADS-box transcription factors play a vital role in the development of reproductive organs and fruits. However, the mechanisms by which MADS-box transcription factors participate in determining the size of organs remain incompletely understood. This study demonstrated that the overexpression of SlMADS48 results in elongated sepals and is accompanied by an elevated gibberellin content, compared with the wild type (WT). The interaction between SlMADS48 and several proteins (SlMC, SlMBP21, SlJOINTLESS, and SlFYFL) involved in sepal development was identified. In addition, the OE-SlMADS48 lines exhibited increased branches and total numbers of flowers. Molecular analysis revealed that SlMADS48 interacted with TM29, FUL1, FUL2, and MBP20, which are associated with inflorescence development. Moreover, SlMDS48 directly targeted the promoter of SlTM3 via the CArG-box motif, reducing its transcript levels. Additionally, the overexpression of SlMADS48 led to a reduction in the size of fruit, together with decreased contents of cytokinins and indole acetic acid (IAA) compared with the WT. Furthermore, SlMADS48 directly combined with the promoters of SlcycD6;1 and SlIAA29 in the cytokinin and auxin pathways, respectively. This research advanced our understanding of SlMADS48’s role in determining organ size and provided valuable insights into target gene selection in tomato breeding programs.
Full article
(This article belongs to the Special Issue Horticultural Plant Physiology and Molecular Biology—2nd Edition)
Open AccessArticle
Repellent, Lethal Activity, and Synergism of Cannabis sativa Extracts with Terpenes Against a Laboratory Colony of Triatoma infestans
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Martín M. Dadé, Martín R. Daniele, Sergio Rodriguez, Pilar Díaz, Maria Pía Silvestrini, Guillermo R. Schinella, Gustavo H. Marin, Daniel Barrio and Jose M. Prieto Garcia
Plants 2025, 14(21), 3258; https://doi.org/10.3390/plants14213258 (registering DOI) - 24 Oct 2025
Abstract
Triatoma infestans is one of the primary vectors of Chagas disease. This vector has developed increasing resistance to pyrethroids, the main insecticides used for its control. Recent studies have highlighted the repellent and lethal effects of Cannabis sativa on insects, suggesting its potential
[...] Read more.
Triatoma infestans is one of the primary vectors of Chagas disease. This vector has developed increasing resistance to pyrethroids, the main insecticides used for its control. Recent studies have highlighted the repellent and lethal effects of Cannabis sativa on insects, suggesting its potential use in pest management. Based on this, we hypothesize that C. sativa could be a viable bioactive for controlling T. infestans. To test this hypothesis, acetone and ethanol extracts were obtained from the inflorescences of C. sativa L. (Deep Mandarine variety) using sonication. These extracts were analyzed through gas chromatography and high-performance liquid chromatography. The repellent and lethal effects of the extracts were evaluated on fifth-instar nymphs of T. infestans from a laboratory colony, as well as on the beneficial non-target species, Apis mellifera. The most abundant terpenes identified were β-caryophyllene and β-pinene, with concentrations exceeding 100 ppm in both extracts. Cannabidiol and Δ9-tetrahydrocannabinol were the predominant cannabinoids. Both extracts exhibited maximum lethal activity 48 h after insect contact, with the acetone extract demonstrating a potency five times greater than the ethanolic extract. Binary combinations of C. sativa extracts with major terpenes showed dose-dependent interactions against T. infestans, ranging from strong synergy (e.g., AE + β-caryophyllene, CI = 0.06–0.17) to marked antagonism (e.g., AE + E-ocimene, CI = 1.60–4.80). Furthermore, the acetone extract showed a more effective repellent action compared to the ethanol extract, even outperforming N,N-Diethyl-meta-toluamide (DEET, positive control). At a concentration of 25 µg/cm2 for 60 min, the acetone extract achieved a 100% repellent effect, whereas DEET required a concentration of 50 µg/cm2 to achieve the same effect. Unlike imidacloprid (positive control), neither extract showed toxicity to adult A. mellifera at the evaluated doses.
Full article
(This article belongs to the Special Issue Recent Advances in Essential Oils and Plant Extracts)
Open AccessArticle
In Vivo Assessment of the Photoprotective Potential of Underutilized Carob Fractions by Using Caenorhabditis elegans
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Héctor Gómez-Llorente, Samuel Furones, Noelia Castillejo, Sara Tortajada, Samuel Verdú, Raúl Grau, Édgar Pérez-Esteve and José M. Barat
Plants 2025, 14(21), 3257; https://doi.org/10.3390/plants14213257 (registering DOI) - 24 Oct 2025
Abstract
The revalorization of agro-industrial by-products is a key strategy for promoting sustainability and the circular economy. This study assessed the photoprotective potential of underutilized carob (Ceratonia siliqua L.) fractions, including unripe and mature pods, leaves, and seed tissues, through chemical characterization, in
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The revalorization of agro-industrial by-products is a key strategy for promoting sustainability and the circular economy. This study assessed the photoprotective potential of underutilized carob (Ceratonia siliqua L.) fractions, including unripe and mature pods, leaves, and seed tissues, through chemical characterization, in vitro assays, and in vivo validation. Extracts showed high polyphenol contents (up to 4.8 g GAE/100 g) and strong antioxidant activity (up to 45 g TE/100 g). Photoprotective properties were confirmed by a solar protection factor of up to 17 and erythema transmission values of 3–6, indicating efficient UV absorption and anti-inflammatory potential, which together support overall skin protection. To validate these effects under physiological conditions, Caenorhabditis elegans was used as an in vivo model under three exposure modalities: complete exposure (contact and ingestion), the barrier effect (UV shielding by the medium), and the physiological effect (systemic protection after ingestion). Seed episperm and unripe pods showed the highest efficacy. Notably, complete exposure reduced UV-induced lethality from 98% to below 50%, mainly due to the barrier effect. This is the first report demonstrating the photoprotective activity of carob by-products in C. elegans, supporting their potential as natural ingredients for cosmetic and nutraceutical applications, and contributing to the sustainable revalorization of local agricultural residues.
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(This article belongs to the Special Issue Plant-Based Foods and By-Products)
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Climate, Weather, and Ecology in Evaluation of High Latitude Spring Wheat Breeding Sites and Germplasm
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Alexey Morgounov, Mikhail Divashuk, Anastasia Chernook, Daniil Ulyanov, Oleg Kuzmin, Ekaterina Shreyder, Nadya Bondarenko, Klavdiya Volokitina, Anastasia Kazak, Daniyar Tajibayev and Vladimir Shamanin
Plants 2025, 14(21), 3256; https://doi.org/10.3390/plants14213256 (registering DOI) - 24 Oct 2025
Abstract
The Ural Mountains in the Western Siberia region cultivate over 3.5 M ha of short season spring wheat, with an average grain yield of 1.6–2.0 t/ha. The study focus was the analysis of climate change and weather effects on spring wheat yields from
[...] Read more.
The Ural Mountains in the Western Siberia region cultivate over 3.5 M ha of short season spring wheat, with an average grain yield of 1.6–2.0 t/ha. The study focus was the analysis of climate change and weather effects on spring wheat yields from 2001 to 2024 and on genotype–environment interactions in the Kazakhstan–Siberia Spring Wheat Improvement network (KASIB) trials from 2019 to 2024. Climate change has the tendency to gradually reduce precipitation and increase air temperatures, which negatively affect spring wheat yields. Based on regional yield and weather, the region was divided into subregions: Tyumen in the North with a high yield; Chelyabinsk with lower precipitation and a lower grain yield; and Omsk and Kurgan were similar in most years. Environments at the four breeding programs (Chelyabinsk Agricultural Research Institute, Kurgan Seeds, and Omsk and Tyumen State Agrarian Universities) did not fully reflect the target production areas due to a very high yield gap and lack of association between the research and production yields. Genotype–environment interaction analysis showed that the Tyumen site had the highest yield and best discriminating ability, while Chelyabinsk best represented the whole target region. Most of the highest yielding material in KASIB trials originated from outside of the region. Spring wheat breeding programs in the region ought to improve to maintain a competitive edge.
Full article
(This article belongs to the Special Issue Improvement of Agronomic Traits and Nutritional Quality of Wheat)
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Light Scattering of Leaf Surface and Spongy Mesophyll and Concentration of Anthocyanin Influence Typical and Modified Photochemical Reflectance Indices
by
Ekaterina Sukhova, Lyubov Yudina, Yuriy Zolin, Alyona Popova, Kseniya Grebneva, Karina Abasheva, Elizaveta Kozlova and Vladimir Sukhov
Plants 2025, 14(21), 3255; https://doi.org/10.3390/plants14213255 - 24 Oct 2025
Abstract
The photochemical reflectance index (PRI) based on reflectance at 531 and 570 nm and its modifications with shifted measuring wavelengths are well-known indicators of stress changes in photosynthetic processes which can be induced in plants under the action of numerous adverse factors (e.g.,
[...] Read more.
The photochemical reflectance index (PRI) based on reflectance at 531 and 570 nm and its modifications with shifted measuring wavelengths are well-known indicators of stress changes in photosynthetic processes which can be induced in plants under the action of numerous adverse factors (e.g., drought). However, the relationships between photosynthetic characteristics and the PRI are varied in different works; this means that photosynthetic responses are not the only reason for PRI changes. In the current work, we analyzed the influence of the light scattering of leaf surfaces and mesophyll layers and concentrations of leaf pigments on typical and modified PRIs. The analytical model of light reflectance and transmittance in the leaves of dicot plants, which had been previously developed in our work, and experimental measurements were used to analyze this influence. It was shown that increasing the light scattering of the leaf surface and the anthocyanin concentration and decreasing the light scattering of the spongy mesophyll increased PRIs with short measuring wavelengths and decreased PRIs with long measuring wavelengths. The action of drought induced similar changes in typical and modified PRIs, which were accompanied by an increased light scattering of the leaf surface and anthocyanin concentration and a decreased light scattering of the spongy mesophyll. The results show that changes in the light scattering of the leaf surface and spongy mesophyll and in the anthocyanin concentration can be the important mechanisms of slow changes in typical and modified PRIs, including drought-induced ones.
Full article
(This article belongs to the Special Issue The Application of Spectral Techniques in Agriculture and Forestry—2nd Edition)
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Open AccessArticle
Regulatory Effects of Different Doses of Penoxsulam on Endogenous Hormones and Antioxidant System in Foxtail Millet
by
Chunyan Hu, Tingting Chen, Chunxia Diao, Binglan Dou, Suqi Shang, Shuo Li, Yinyuan Wen, Xi’e Song, Juan Zhao, Hui Cao and Shuqi Dong
Plants 2025, 14(21), 3254; https://doi.org/10.3390/plants14213254 (registering DOI) - 24 Oct 2025
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The specific objectives include three points: (1) to clarify the dynamic change laws of the contents of three key endogenous hormones, namely, indole-3-acetic acid (IAA), gibberellin (GA), and abscisic acid (ABA), in foxtail millet leaves after penoxsulam treatment, and their correlations with drug
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The specific objectives include three points: (1) to clarify the dynamic change laws of the contents of three key endogenous hormones, namely, indole-3-acetic acid (IAA), gibberellin (GA), and abscisic acid (ABA), in foxtail millet leaves after penoxsulam treatment, and their correlations with drug dose and treatment time; (2) to analyze the effects of different doses of penoxsulam on the antioxidant system of foxtail millet, specifically including the change characteristics of hydrogen peroxide (H2O2), superoxide anion (O2−), reduced glutathione (GSH) content, and cell membrane permeability (MP); and (3) to reveal the correlation between endogenous hormone changes and antioxidant system indicators through correlation analysis so as to provide a direct experimental basis for the screening of safe doses of penoxsulam application in foxtail millet fields and the research on the herbicide stress resistance mechanism of foxtail millet. Using Jingu 21 as the test material, four penoxsulam dose levels were set through pot and field experiments. The changes in endogenous hormone content, antioxidant system indexes, and phenotypic indicators of foxtail millet were determined at different periods after treatment, and the correlation between endogenous hormones and antioxidant systems was analyzed. Compared with the control (P0), the contents of IAA and GA in foxtail millet showed a “first increasing and then decreasing” trend, while the content of ABA showed a continuous increasing trend. With the increase in penoxsulam concentration, the contents of H2O2, O2−, GSH, and MP in foxtail millet gradually increased. A correlation analysis showed that there was a significant correlation between leaf endogenous hormones and the defense capacity of the antioxidant system. After penoxsulam treatment, foxtail millet leaves showed dynamic changes of “first increasing and then decreasing” in IAA and GA contents, and a continuous increase in ABA contents. At the same time, H2O2, O2−, GSH content, and MP increased significantly with the increase in the drug dose. It is speculated that foxtail millet may indirectly regulate the defense ability of the antioxidant system by regulating the content of endogenous hormones to alleviate the damage of herbicide stress.
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Open AccessArticle
Analysis of the Toxicological Profile of Heracleum sosnowskyi Manden. Metabolites Using In Silico Methods
by
Anna E. Rassabina and Maxim V. Fedorov
Plants 2025, 14(21), 3253; https://doi.org/10.3390/plants14213253 - 24 Oct 2025
Abstract
The invasive plant Heracleum sosnowskyi Manden. is a valuable source of a number of bioactive metabolites that can be used in the pharmaceutical industry and medicine and may have some other applications as well. Today, there is a need to summarize data on
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The invasive plant Heracleum sosnowskyi Manden. is a valuable source of a number of bioactive metabolites that can be used in the pharmaceutical industry and medicine and may have some other applications as well. Today, there is a need to summarize data on these substances as well as analyze the toxicological profile of the metabolites of H. sosnowskyi. In this study, we collected a dataset of 225 metabolites of H. sosnowskyi from different literature sources and performed cluster analysis of their chemical structures; we revealed five main clusters of compounds: terpenoids, aromatic compounds, polyaromatic compounds, fatty acids, and furanocoumarins. In order to fill the gaps in the experimental data on the toxicity of the studied substances, we used machine learning (ML) algorithms previously designed for high-accuracy prediction of toxicity end-points. The ML-based approach allowed us to fill in up to 90% of the missing median lethal dose (mouse) data for the studied molecules. The validity of each predicted value was confirmed by analyzing the applicability domain of the used ML models. For the calculations and ML modeling, we used the Syntelly chemoinformatics platform. For the most toxic compounds—hydroxycoumarins and furanocoumarins of H. sosnowskyi—the values for hepatotoxicity, drug-induced liver injury (DILI), cardiotoxicity, and carcinogenicity were predicted. Based on the analysis of values for the mouse animal model, the greatest toxicity for furanocoumarins is expected with the intravenous route of administration (62–450 mg/kg), which can cause drug-induced liver injury. At the same time, the data do not show high cardiotoxicity risks for the studied furanocoumarins. Based on the presented results, we discuss prospects of using some of the compounds as pharmaceutical agents.
Full article
(This article belongs to the Special Issue Phytochemistry and Pharmacological Properties of Medicinal Plants)
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Identification of Stable Meta-QTLs and Candidate Genes Underlying Fiber Quality and Agronomic Traits in Cotton
by
Abdulqahhor Kh. Toshpulatov, Ozod S. Turaev, Abdulloh A. Iskandarov, Kuvandik K. Khalikov, Sevara K. Arslanova, Asiya K. Safiullina, Mukhlisa K. Kudratova, Barno B. Oripova, Feruza U. Rafieva, Madina D. Kholova, Dilrabo K. Ernazarova, Davron M. Kodirov, Bunyod M. Gapparov, Doniyor J. Komilov, Marguba A. Togaeva, Abduburkhan K. Kurbanov, Doston Sh. Erjigitov, Mukhammad T. Khidirov, John Z. Yu and Fakhriddin N. Kushanov
Plants 2025, 14(21), 3252; https://doi.org/10.3390/plants14213252 - 24 Oct 2025
Abstract
Cotton is a globally important crop, with fiber quality traits governed by complex quantitative trait loci (QTL). However, the utility of QTL data is often limited due to inconsistencies across studies. This study conducted a comprehensive Meta-QTL (MQTL) analysis by integrating 2864 QTLs
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Cotton is a globally important crop, with fiber quality traits governed by complex quantitative trait loci (QTL). However, the utility of QTL data is often limited due to inconsistencies across studies. This study conducted a comprehensive Meta-QTL (MQTL) analysis by integrating 2864 QTLs from 50 independent studies published between 2000 and 2024. Of these, 2162 high-confidence QTLs were projected onto a consensus genetic map using BioMercator V4.2.3, resulting in the identification of 75 MQTLs across the cotton genome. These MQTLs exhibited significantly reduced confidence intervals and enhanced statistical support, with 14 MQTLs reported for the first time. Several MQTLs, including MQTLchr7-1, MQTLchr14-1, and MQTLchr24-1, were identified as stable clusters harboring key fiber quality and stress tolerance traits. Candidate gene analysis within select MQTL regions revealed 75 genes, 38 of which were annotated with significant gene ontology terms related to lignin catabolism, flavin binding, and stress responses. Notably, GhLAC-4, GhCTL2, and UDP-glycosyltransferase 92A1 were highlighted for their potential roles in fiber development and abiotic stress tolerance. These findings provide a refined genomic framework for cotton improvement and offer valuable resources for marker-assisted selection (MAS) and functional genomics aimed at enhancing fiber quality, yield, and stress resilience in cotton breeding programs.
Full article
(This article belongs to the Special Issue Bioinformatics and Functional Genomics in Modern Plant Science)
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Open AccessArticle
Ectopic Expression of a Poplar Gene PtrMYB119 Confers Enhanced Tolerance to Drought Stress in Transgenic Nicotiana tabacum
by
Weibing Zhuang, Li Sun, Jiaqi An, Jie Zhu, Tengyue Yan, Tao Wang, Xiaochun Shu and Zhong Wang
Plants 2025, 14(21), 3251; https://doi.org/10.3390/plants14213251 - 23 Oct 2025
Abstract
Drought stress is a major limiting factor during the process of plant growth and development, especially in arid and semi-arid regions. MYB transcription factors play vital roles in the regulation of many developmental processes under various stresses. The aim of this study was
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Drought stress is a major limiting factor during the process of plant growth and development, especially in arid and semi-arid regions. MYB transcription factors play vital roles in the regulation of many developmental processes under various stresses. The aim of this study was to determine whether PtrMYB119 enhanced dehydration tolerance in Nicotiana tabacum. PtrMYB119, with a weak transactivation activity, was distributed throughout the cell with no apparent specificity. The transgenic tobacco overexpressing PtrMYB119 might regulate dehydration tolerance through increased ABA content and antioxidant enzyme activities, decreased MDA levels, and up-regulation of antioxidant genes, polyamine biosynthesis genes, and drought-responsive genes. Overall, our results could contribute to the elucidation of drought tolerance underlying PtrMYB119 action in tobacco and indicated that PtrMYB119 could be exploited for engineering drought-enduring plants in the future.
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(This article belongs to the Special Issue Plant and Forest Product Resilience: Stress Adaptation Mechanisms)
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Open AccessArticle
Genome-Wide Identification and Expression Analysis of Mitochondrial Dicarboxylate Carriers (DICs) in Medicago Under Aluminum Stress
by
Chengcheng Yan, Xiaoqing Liu, Zhen Li, Yujie Lin, Zhenfei Guo and Yang Zhang
Plants 2025, 14(21), 3250; https://doi.org/10.3390/plants14213250 - 23 Oct 2025
Abstract
Aluminum (Al) is solubilized as phytotoxic Al3+ in acidic soils, rapidly inhibiting root elongation. To detoxify Al, plant roots secrete organic acids that chelate the ion. The transcription factor SENSITIVE-TO-PROTON-RHIZOTOXICITY1 (STOP1) regulates the export, distribution and metabolism of organic acids, which is
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Aluminum (Al) is solubilized as phytotoxic Al3+ in acidic soils, rapidly inhibiting root elongation. To detoxify Al, plant roots secrete organic acids that chelate the ion. The transcription factor SENSITIVE-TO-PROTON-RHIZOTOXICITY1 (STOP1) regulates the export, distribution and metabolism of organic acids, which is crucial for Al resistance. Plant DICARBOXYLATE-CARRIERs (DICs) located in the inner mitochondrial membrane are presumed to exchange the dicarboxylates. However, whether Al or STOP1 modulates DIC expression to coordinate the organic acid shuttle remains unclear. Here, in the model legume Medicago truncatula, we identified three DIC genes and twelve in tetraploid Medicago sativa. Phylogenetic analysis places all Medicago DICs in a clade with Arabidopsis AtDIC1 and AtDIC2, whereas AtDIC3 lacks an ortholog in M. truncatula. Mining RNA-seq datasets followed by qRT-PCR validation showed that MtDIC2 is upregulated by Al in roots in a MtSTOP1-dependent manner. Consistently, STOP1-binding motifs exist in the MtDIC2 promoter, and MtSTOP1 binds to the MtDIC2 promoter in yeast. Furthermore, MsDIC2.4 shows an increase under Al treatment. Our study provides a genome-wide characterization of Medicago DICs and identifies MtDIC2 as a candidate target of MtSTOP1, whose Al-responsive induction may enhance organic acid flux across the mitochondrial membrane.
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(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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Open AccessArticle
Effect of Essential Oils on Postharvest Management of Anthracnose Associated with Colletotrichum gloeosporioides (Penz.) Penz & Sacc., in Mango
by
Petra Andrade-Hoyos, Marianguadalupe Hernández-Arenas, Aarón Mendieta-Moctezuma, Edwin Javier Barrios-Gómez, Omar Romero-Arenas, Selma Ríos-Meléndez, Conrado Parraguirre-Lezama and Patricia Ibarra-Torres
Plants 2025, 14(21), 3249; https://doi.org/10.3390/plants14213249 - 23 Oct 2025
Abstract
This study evaluated the efficacy of essential oils (EOs) for the postharvest management of anthracnose caused by Colletotrichum gloeosporioides in mango. EOs from Cinnamon (Cinnamomum zeylanicum), Oregano (Origanum vulgare), Rosemary (Salvia rosmarinus), and Black pepper (Piper
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This study evaluated the efficacy of essential oils (EOs) for the postharvest management of anthracnose caused by Colletotrichum gloeosporioides in mango. EOs from Cinnamon (Cinnamomum zeylanicum), Oregano (Origanum vulgare), Rosemary (Salvia rosmarinus), and Black pepper (Piper nigrum) were chemically characterized using gas chromatography–mass spectrometry (GC–MS). The main compounds identified included eugenol, methyl eugenol, carvacrol, and eucalyptol, all recognized for their antifungal and antioxidant properties. In vitro assays showed that cinnamon and black pepper EOs significantly inhibited mycelial growth of C. gloeosporioides at all tested concentrations, whereas rosemary EO exhibited lower efficacy. In vivo experiments confirmed that all tested EOs significantly reduced disease severity in mango fruits compared to the control. Overall, the antifungal activity of EOs was dose-dependent and strongly influenced by their chemical complexity and synergistic interactions among major and minor components. These findings highlight the relevance of oxygenated monoterpenes, hydrocarbon monoterpenes, and sesquiterpenes as candidate groups for developing sustainable alternatives for the control of C. gloeosporioides in mango production.
Full article
(This article belongs to the Special Issue Emerging Topics in Botanical Biopesticides—2nd Edition)
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Open AccessReview
A Review of the Regulatory Role of Plant Growth–Promoting Rhizobacteria in Alfalfa Under Stress Conditions
by
Yu-Yan Zhang, Jin-Lei Liu, Xuan Wang, Xin Cao, Kang-Hui Liu, Yu-Ting Luo, Jia-Yin Chen, Jiang Zhang and Yong-Hong Fan
Plants 2025, 14(21), 3248; https://doi.org/10.3390/plants14213248 - 23 Oct 2025
Abstract
Alfalfa (Medicago sativa L.) is a crucial plant for saline and alkaline soil development, which is crucial for managing the salinization of global land resources. It can withstand saline and alkaline stress and can fix nitrogen. By secreting phytohormones, fixing nitrogen, and
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Alfalfa (Medicago sativa L.) is a crucial plant for saline and alkaline soil development, which is crucial for managing the salinization of global land resources. It can withstand saline and alkaline stress and can fix nitrogen. By secreting phytohormones, fixing nitrogen, and boosting antioxidant capacity, nitrogen–fixing bacteria, rhizobacteria, and other inter–root biotrophic bacteria encourage alfalfa development and reduce salinity stress. Alfalfa’s symbiotic association also encourages other plants to tolerate salinity and greatly boosts the amount of nitrogen in the soil. The mechanism by which inter–root growth–promoting bacteria mitigate saline and alkaline stress in alfalfa remains a prominent research focus. This paper reviews the current state of research on inter–root probiotic bacteria associated with alfalfa, utilizing literature mining to summarize the resource information of inter–root nitrogen–fixing bacteria found in saline–alkaline soils. We elucidate their nitrogen-fixing mechanisms and adaptive characteristics, explore their roles and potential applications in the improvement of saline–alkaline lands, and provide a theoretical foundation for the development of novel nitrogen–fixing bacterial fertilizers and restoration technologies for saline–alkaline environments.
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(This article belongs to the Section Plant Physiology and Metabolism)
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Open AccessArticle
Inhibition of α-Glucosidase Activity and Islet Amyloid PolyPeptide Fibril Formation by Rubus ulmifolius Fruit Extract: A Potential Therapeutic Approach for Type 2 Diabetes Mellitus
by
Sonia Floris, Barbara Noli, Cristina Cocco, Antonella Fais, Benedetta Era, Carlo Ignazio Giovanni Tuberoso, Valentina Masala, Franca Piras, Valeria Sogos, Amalia Di Petrillo, Antonio De Agostini, Francesca Pintus and Cinzia Sanna
Plants 2025, 14(21), 3247; https://doi.org/10.3390/plants14213247 - 23 Oct 2025
Abstract
This study examines the antidiabetic potential of Rubus ulmifolius, a shrub traditionally used for medicinal and nutritional purposes. The aim was to assess the fruit extract’s inhibitory effect on α-amylase and α-glucosidase, therapeutic targets in type 2 diabetes (T2D), given their role
[...] Read more.
This study examines the antidiabetic potential of Rubus ulmifolius, a shrub traditionally used for medicinal and nutritional purposes. The aim was to assess the fruit extract’s inhibitory effect on α-amylase and α-glucosidase, therapeutic targets in type 2 diabetes (T2D), given their role in carbohydrate digestion. Considering the role of islet amyloid polypeptide (IAPP) aggregation in pancreatic β-cell dysfunction in T2D, the extract’s effect on inhibiting this process was also evaluated. Cytocompatibility and antioxidant effects were tested in Caco-2 cells, while caspase-1 activity was measured to evaluate anti-inflammatory potential. Phytochemical analysis of R. ulmifolius fruits revealed various phenolic compounds, with anthocyanin as the most abundant one. The cyanidin-3-O-glucoside accounted for 86% of all anthocyanins. Among flavonoids, the most represented ones were quercetin-HMG-glucoside and a kaempferol derivative, while ellagic acid glucuronide was the predominant ellagitannin. The extract showed significantly higher α-glucosidase inhibition with an IC50 value of 2.8 µg/mL, 32 times more effective than acarbose, and it markedly inhibited IAPP aggregation in a dose-dependent manner. It demonstrated antioxidant activity in cellular and acellular systems, without cytotoxicity. Caspase-1 activity was also reduced in intestinal cells. These findings support R. ulmifolius fruits as a promising functional food for managing T2D and preserving pancreatic function.
Full article
(This article belongs to the Special Issue Bioactive Compounds in Plants: Sources, Identification and Applications)
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Open AccessArticle
Unveiling the GA4-Ferulic Acid Regulatory Axis: Redox-Mediated Suberization Governs Adventitious Rooting Recalcitrance in Pinus massoniana
by
Yin Wang and Ruiling Yao
Plants 2025, 14(21), 3246; https://doi.org/10.3390/plants14213246 - 23 Oct 2025
Abstract
Pinus massoniana, a critically important afforestation species in subtropical China, shows severe adventitious rooting recalcitrance linked to endogenous gibberellin (GA) dysregulation. Our study reveals a GA4-mediated regulatory network that coordinates hormonal crosstalk, redox homeostasis, and cell wall remodeling. Treatment with
[...] Read more.
Pinus massoniana, a critically important afforestation species in subtropical China, shows severe adventitious rooting recalcitrance linked to endogenous gibberellin (GA) dysregulation. Our study reveals a GA4-mediated regulatory network that coordinates hormonal crosstalk, redox homeostasis, and cell wall remodeling. Treatment with the GA biosynthesis inhibitor paclobutrazol (PBZ, 100 mg·L−1) shortened rooting time by 32.5% and increased rooting success by 79.5%. We found that PBZ redirected GA flux by upregulating GA3-oxidase (GA3OX), leading to GA4 accumulation. However, elevated GA4 levels impaired root development by triggering suberization through ferulic acid (FA)-mediated redox imbalance. Application of GA4 (100 mg·L−1) reduced caffeoyl alcohol content by 54.4% but increased FA and caffeic acid levels 2.4–3.9-fold, shifting lignin precursors toward suberin biosynthesis. FA modulated H2O2 flux in a dose-dependent manner: 200 mg·L−1 optimized redox homeostasis (93.7% lower H2O2 influx), whereas 1000 mg·L−1 suppressed mitosis. The combination of PBZ (100 mg·L−1) and FA (200 mg·L−1) synergistically enhanced rooting success by 34.4% and achieved 95.8% field survival after two years (vs. 68.5% in controls), challenging the traditional view that lignification alone limits rooting in woody plants. This work provides the first evidence that the GA4-FA axis controls adventitious root formation in conifers via a Reactive oxygen species (ROS)-dependent switch between suberin and lignin metabolism, offering new strategies to overcome rooting barriers. The PBZ + FA protocol enables scalable clonal propagation of recalcitrant conifers, with potential applications in molecular breeding and forest restoration.
Full article
(This article belongs to the Special Issue Exploring the Formation of Adventitious Roots in Perennial Species: Insights and Perspectives)
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