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Volume 12
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10.3390/plants12233995
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Article

Comparative Study of Plastomes in Solanum tuberosum with Different Cytoplasm Types

by
Svetlana Goryunova
1,*,
Anastasia Sivolapova
1,
Oksana Polivanova
1,
Evgeniia Sotnikova
2,
Alexey Meleshin
1,
Natalia Gaitova
1,
Anna Egorova
1,
Anatoly Semenov
1,
Ekaterina Gins
1,
Alina Koroleva
1,
Evgeny Moskalev
1,
Elena Oves
1,
Oleg Kazakov
1,
Aleksey Troitsky
3,* and
Denis Goryunov
1,3,*
1
Russian Potato Research Centre, 140051 Kraskovo, Russia
2
National Medical Research Center for Therapy and Preventive Medicine of the Ministry of Healthcare of the Russian Federation, Petroverigsky per.10, Bld. 3, 101990 Moscow, Russia
3
Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992 Moscow, Russia
*
Authors to whom correspondence should be addressed.
Plants 2023, 12(23), 3995; https://doi.org/10.3390/plants12233995
Submission received: 31 October 2023 / Revised: 20 November 2023 / Accepted: 22 November 2023 / Published: 28 November 2023
(This article belongs to the Special Issue Plant Molecular Phylogenetics and Evolutionary Genomics III)
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Abstract

The potato is one of the most important food crops in the world. Improving the efficiency of potato breeding is of great importance for solving the global food problem. Today, researchers distinguish between six potato cytoplasm types: A, M, P, T, W, D. In the current study, the complete chloroplast genomes of Solanum tuberosum accessions with five out of the six major cytoplasmic genome types were sequenced (T-, W-, D-, A-, and P-genomes). A comparative analysis of the plastomes in potato accessions with different cytoplasm types was carried out for the first time. The time of origin of the different cytoplasm types was estimated. The presence of two main groups of chloroplast genomes among cultivated potato was confirmed. Based on the phylogenetic analysis of the complete plastome sequences, five main evolutionary branches of chloroplast genomes can be distinguished within the Petota section. Samples with A- and P- cytoplasm formed isolated and distant groups within a large and polymorphic group of samples with M-type cytoplasm, suggesting that A and P genomes arose independently. The findings suggest that the diversity of the T-genome in S. tuberosum Group Tuberosum could be initially low due to a bottle neck already existing at the origin of the Chilean clade. Differences in the rbcL gene sequence may be one of the factors causing differences in economically important traits in species with A and T-type cytoplasm. The data obtained will contribute to the development of methods for molecular marking of cytoplasm types and increase knowledge about the evolution and diversity of potato.
Keywords: Solanum tuberosum; potato; cytoplasm type; chloroplast genome; phylogeny; adaptive evolution; diversity; divergence time; rbcL; Rubisco Solanum tuberosum; potato; cytoplasm type; chloroplast genome; phylogeny; adaptive evolution; diversity; divergence time; rbcL; Rubisco

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MDPI and ACS Style

Goryunova, S.; Sivolapova, A.; Polivanova, O.; Sotnikova, E.; Meleshin, A.; Gaitova, N.; Egorova, A.; Semenov, A.; Gins, E.; Koroleva, A.; et al. Comparative Study of Plastomes in Solanum tuberosum with Different Cytoplasm Types. Plants 2023, 12, 3995. https://doi.org/10.3390/plants12233995

AMA Style

Goryunova S, Sivolapova A, Polivanova O, Sotnikova E, Meleshin A, Gaitova N, Egorova A, Semenov A, Gins E, Koroleva A, et al. Comparative Study of Plastomes in Solanum tuberosum with Different Cytoplasm Types. Plants. 2023; 12(23):3995. https://doi.org/10.3390/plants12233995

Chicago/Turabian Style

Goryunova, Svetlana, Anastasia Sivolapova, Oksana Polivanova, Evgeniia Sotnikova, Alexey Meleshin, Natalia Gaitova, Anna Egorova, Anatoly Semenov, Ekaterina Gins, Alina Koroleva, and et al. 2023. "Comparative Study of Plastomes in Solanum tuberosum with Different Cytoplasm Types" Plants 12, no. 23: 3995. https://doi.org/10.3390/plants12233995

APA Style

Goryunova, S., Sivolapova, A., Polivanova, O., Sotnikova, E., Meleshin, A., Gaitova, N., Egorova, A., Semenov, A., Gins, E., Koroleva, A., Moskalev, E., Oves, E., Kazakov, O., Troitsky, A., & Goryunov, D. (2023). Comparative Study of Plastomes in Solanum tuberosum with Different Cytoplasm Types. Plants, 12(23), 3995. https://doi.org/10.3390/plants12233995

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