Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs
Abstract
:1. Introduction
2. Results
2.1. Foreground Selection of F1 Hybrids and Backcross Populations
2.2. Marker-Assisted Background Selection of Backcross Populations
2.3. Recurrent Parent Genome Recovery of the Selected Improved BC2F2 Lines
2.4. Genetic Increase of the Recurrent Parent Genome Size in Backcross Generations
2.5. Genetic Decrease of the Donor Parent Genome Size in Backcross Generations
2.6. Agronomic Performance of Selected Backcross Lines
3. Discussions
4. Materials and Methods
4.1. Source of Germplasm and Breeding Procedure
4.2. Extraction of DNA and Molecular Marker Screening
4.3. DNA Scoring
4.4. Foreground and Background Selections
4.5. Phenotypic Selection, Characterization for Agro-Morphological Traits and Data Analysis
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Molecular Marker | Chro. No. | Marker Segregation Analysis | χ2 (1:1) | |
---|---|---|---|---|
BLB | A | H | ||
Xa21FR | 11 | 122 | 108 | 0.85 |
Xa13prom | 8 | 110 | 125 | 0.96 |
RM13 | 5 | 130 | 118 | 0.58 |
MP | 4 | 100 | 122 | 2.18 |
Blast | ||||
RM8225 | 6 | 120 | 112 | 0.28 |
RM6836 | 6 | 120 | 112 | 0.28 |
Molecular Marker | Chro. No. | Marker Segregation Analysis | χ2 (1:1) | |
---|---|---|---|---|
BLB | A | H | ||
Xa21FR | 11 | 130 | 106 | 2.44 |
Xa13prom | 8 | 121 | 106 | 0.99 |
RM21 | 11 | 130 | 106 | 2.44 |
MP | 4 | 112 | 96 | 1.23 |
Blast | ||||
RM8225 | 6 | 128 | 108 | 1.70 |
RM6836 | 6 | 128 | 108 | 1.70 |
Molecular Marker | Chro. No. | Marker Segregation Analysis | χ2 (1:1) | ||
---|---|---|---|---|---|
BLB | A | H | B | ||
Xa21FR | 11 | 176 | 25 | 17 | 361.40 |
Xa13prom | 8 | 129 | 57 | 32 | 135.94 |
RM21 | 11 | 176 | 25 | 17 | 361.40 |
MP | 4 | 49 | 54 | 115 | 95.47 |
Blast | |||||
RM8225 | 6 | 69 | 100 | 49 | 4.80 |
RM6836 | 6 | 69 | 100 | 49 | 4.80 |
Improved Lines | PH (cm) | FLWR | NP/H | DF | DM | NT | PL (cm) | TNG/P | 1000GW (g) | TGW/H (g) | SLWR | Y/HA (t/ha) | %RPGR | P7.7 | P7.2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BC2F2–157 | 103.01 | 13.46 | 11 | 72 | 108 | 11 | 38.56 | 154 | 78.63 | 57.42 | 3.39 | 9.18 | 97.10 | HR | HR |
BC2F2–122 | 117.01 | 13.20 | 13 | 78 | 102 | 15 | 31.96 | 152 | 81.83 | 53.64 | 3.84 | 8.58 | 94.30 | R | HR |
BC2F2–9 | 110.51 | 12.24 | 15 | 73 | 106 | 17 | 30.06 | 137 | 82.83 | 59.28 | 3.65 | 9.48 | 94.00 | R | HR |
BC2F2–196 | 109.21 | 9.74 | 20 | 75 | 103 | 18 | 34.06 | 172 | 76.33 | 56.28 | 4.10 | 9.00 | 96.00 | HR | HR |
BC2F2–120 | 114.71 | 13.06 | 16 | 74 | 105 | 14 | 34.36 | 177 | 81.93 | 60.70 | 3.88 | 9.71 | 96.30 | R | HR |
BC2F2–208 | 102.21 | 11.49 | 17 | 79 | 109 | 18 | 29.56 | 142 | 80.63 | 44.47 | 3.93 | 7.11 | 93.30 | R | HR |
BC2F2–155 | 117.51 | 11.66 | 15 | 77 | 110 | 17 | 29.66 | 136 | 78.63 | 45.12 | 3.82 | 7.22 | 97.90 | R | HR |
BC2F2–4 | 119.81 | 17.55 | 22 | 76 | 104 | 26 | 30.16 | 196 | 79.53 | 49.90 | 4.18 | 7.98 | 98.70 | HR | HR |
BC2F2–109 | 115.71 | 13.32 | 17 | 72 | 107 | 15 | 32.56 | 166 | 76.83 | 46.06 | 3.99 | 7.37 | 93.20 | R | HR |
BC2F2–161 | 112.51 | 12.14 | 14 | 79 | 107 | 16 | 32.66 | 207 | 82.53 | 63.98 | 3.96 | 10.23 | 95.60 | R | R |
BC2F2–144 | 114.01 | 15.03 | 13 | 77 | 102 | 12 | 33.76 | 203 | 77.93 | 43.61 | 4.04 | 6.98 | 95.80 | R | HR |
BC2F2–1 | 118.51 | 11.08 | 20 | 75 | 105 | 17 | 31.96 | 205 | 81.33 | 41.51 | 3.75 | 6.64 | 96.90 | R | HR |
BC2F2–50 | 96.51 | 15.28 | 16 | 74 | 109 | 18 | 34.26 | 209 | 77.33 | 73.83 | 4.21 | 11.81 | 94.10 | R | HR |
BC2F2–172 | 106.51 | 16.30 | 13 | 76 | 106 | 15 | 30.86 | 211 | 80.63 | 48.17 | 2.93 | 7.70 | 96.10 | R | HR |
BC2F2–166 | 104.01 | 9.74 | 14 | 75 | 103 | 17 | 34.06 | 172 | 76.33 | 56.28 | 4.10 | 9.00 | 96.90 | R | R |
BC2F2–14 | 108.71 | 15.03 | 13 | 77 | 102 | 11 | 33.76 | 203 | 77.93 | 43.61 | 4.04 | 6.98 | 98.50 | R | HR |
Mean | 110.65a | 13.14a | 15.94a | 75.75a | 105.8 a | 16.06 a | 32.64 a | 177.6 a | 79.45 a | 52.74 a | 3.86 a | 8.44 a | 95.9 | ||
SE | ±1.13 | ±0.48 | ±0.84 | ±0.66 | ±0.66 | ±0.89 | ±0.62 | ±7.40 | ±0.54 | ±2.32 | ±0.08 | ±0.37 | |||
116.50b | 12.56b | 15.00 b | 85.67b | 120.67 b | 15.00 b | 31.83 b | 148.00 b | 75.53 b | 50.41 b | 3.92 b | 8.07 b | ||||
Recurrent Parent | |||||||||||||||
SE | ±1.40 | ±0.97 | ±0.58 | ±1.45 | ±0.88 | ±0.58 | ±1.05 | ±3.61 | ±0.75 | ±1.86 | ±0.11 | ±0.30 |
S/n | Name of Polymorphic SSR Markers Identified | Chro. No. Position |
---|---|---|
1 | RM313, RM309, RM463, RM7376, RM117, RM28076, RM1261, RM415 | 12 |
2 | pTA248, Xa21FR, RM6293, RM206, RM21 | 11 |
3 | RM1375, RM294A, RM333, RM375 | 10 |
4 | RM23865, RM410, RM342, OSR28, RM219, RM160 | 9 |
5 | RM547, RM447, RM6208, RM25, RM310, RM544, RM5556, RM3761, Xa13prom | 8 |
6 | RM72, RM336, RM1134, RM10, RM432, RM1973 | 7 |
7 | RM588, RM508, RM6836, RM8225, RM402 | 6 |
8 | RM13, RM1089, RM1237, RM305, RM233A, RM1253, RM122 | 5 |
9 | MP, RM518, RM8213, RM241, RM127, RM3843, RM261 | 4 |
10 | RM1, RM520, SSR21, RM6308, RM232, RM130 | 3 |
11 | RM262, RM525, RM573, RM452, RM250, RM5390, RM561, RM211, RM3248 | 2 |
12 | RM431, RM272, RM302, RM10025, SSR23, SSR13, SSR26 | 1 |
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Chukwu, S.C.; Rafii, M.Y.; Ramlee, S.I.; Ismail, S.I.; Oladosu, Y.; Muhammad, I.; Musa, I.; Ahmed, M.; Jatto, M.I.; Yusuf, B.R. Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs. Plants 2020, 9, 1411. https://doi.org/10.3390/plants9111411
Chukwu SC, Rafii MY, Ramlee SI, Ismail SI, Oladosu Y, Muhammad I, Musa I, Ahmed M, Jatto MI, Yusuf BR. Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs. Plants. 2020; 9(11):1411. https://doi.org/10.3390/plants9111411
Chicago/Turabian StyleChukwu, Samuel Chibuike, Mohd Y. Rafii, Shairul Izan Ramlee, Siti Izera Ismail, Yusuff Oladosu, Isma’ila Muhammad, Ibrahim Musa, Muideen Ahmed, Muhammed Itopa Jatto, and Bashir Rini Yusuf. 2020. "Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs" Plants 9, no. 11: 1411. https://doi.org/10.3390/plants9111411
APA StyleChukwu, S. C., Rafii, M. Y., Ramlee, S. I., Ismail, S. I., Oladosu, Y., Muhammad, I., Musa, I., Ahmed, M., Jatto, M. I., & Yusuf, B. R. (2020). Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs. Plants, 9(11), 1411. https://doi.org/10.3390/plants9111411