Biodiversity of Lactic Acid Bacteria in Traditional Fermented Foods in Yunnan Province, China, and Comparative Genomics of Lactobacillus plantarum
Abstract
:1. Introduction
2. Materials and Methods
2.1. Isolation and Identification of LAB
2.2. Diversity Analysis
2.2.1. Distribution of LAB in Different Fermented Foods
2.2.2. Distribution of LAB in Different Regions of Yunnan
2.3. Comparative Genomics Analysis
2.4. Statistical Analyses
3. Results
3.1. Diversity of Distribution of LAB
3.1.1. Species and Numbers of Culturable LAB
3.1.2. Dominant LAB in Different Types of Fermented Foods
3.1.3. Distribution of LAB in Different Regions of Yunnan
3.2. Genetic Diversity of L. plantarum
3.2.1. General Genomic Features
3.2.2. ANI Analyses of L. plantarum
3.2.3. Pan-Genome and Core Genes of L. plantarum
3.2.4. Homologous Genes and Phylogenetic Analyses
3.2.5. Functional Annotation Analysis of COG Database
3.2.6. Carbohydrate Enzyme Analysis of L. plantarum
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Fermented Vegetables (n = 37) | Fermented Bean Products (n = 9) | Fermented Meat Products (n = 8) | Average | |
---|---|---|---|---|
Content of GC (%) | 44.21 ± 0.27 a | 44.68 ± 0.34 a | 44.16 ± 0.05 a | 44.28 ± 0.20 |
Genome size (Mb) | 3.63 ± 0.10 a | 3.63 ± 0.22 a | 3.37 ± 0.02 a | 3.59 ± 0.08 |
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Li, H.; Zhu, J.; Xiao, Y.; Zhang, S.; Sun, Y.; Liu, Z.; Chu, C.; Hu, X.; Yi, J. Biodiversity of Lactic Acid Bacteria in Traditional Fermented Foods in Yunnan Province, China, and Comparative Genomics of Lactobacillus plantarum. Fermentation 2023, 9, 402. https://doi.org/10.3390/fermentation9040402
Li H, Zhu J, Xiao Y, Zhang S, Sun Y, Liu Z, Chu C, Hu X, Yi J. Biodiversity of Lactic Acid Bacteria in Traditional Fermented Foods in Yunnan Province, China, and Comparative Genomics of Lactobacillus plantarum. Fermentation. 2023; 9(4):402. https://doi.org/10.3390/fermentation9040402
Chicago/Turabian StyleLi, Hong, Jiang Zhu, Yue Xiao, Shiyao Zhang, Yuwei Sun, Zhijia Liu, Chuanqi Chu, Xiaosong Hu, and Junjie Yi. 2023. "Biodiversity of Lactic Acid Bacteria in Traditional Fermented Foods in Yunnan Province, China, and Comparative Genomics of Lactobacillus plantarum" Fermentation 9, no. 4: 402. https://doi.org/10.3390/fermentation9040402