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  • Tomography is published by MDPI from Volume 7 Issue 1 (2021). Previous articles were published by another publisher in Open Access under a CC-BY (or CC-BY-NC-ND) licence, and they are hosted by MDPI on mdpi.com as a courtesy and upon agreement with Grapho, LLC.

Tomography, Volume 5, Issue 1

2019 March - 27 articles

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Articles (27)

  • Perspective
  • Open Access
15 Citations
1,261 Views
6 Pages

QIN Benchmarks for Clinical Translation of Quantitative Imaging Tools

  • Keyvan Farahani,
  • Darrell Tata and
  • Robert J. Nordstrom

The Quantitative Imaging Network of the National Cancer Institute is in its 10th year of operation, and research teams within the network are developing and validating clinical decision support software tools to measure or predict the response of can...

  • Article
  • Open Access
27 Citations
3,327 Views
8 Pages

Comparison of Voxel-Wise and Histogram Analyses of Glioma ADC Maps for Prediction of Early Therapeutic Change

  • Thomas L. Chenevert,
  • Dariya I. Malyarenko,
  • Craig J. Galbán,
  • Diana M. Gomez-Hassan,
  • Pia C. Sundgren,
  • Christina I. Tsien and
  • Brian D. Ross

Noninvasive imaging methods are sought to objectively predict early response to therapy for high-grade glioma tumors. Quantitative metrics derived from diffusion-weighted imaging, such as apparent diffusion coefficient (ADC), have previously shown pr...

  • Article
  • Open Access
24 Citations
1,923 Views
11 Pages

Repeatability of Quantitative Diffusion-Weighted Imaging Metrics in Phantoms, Head-and-Neck and Thyroid Cancers: Preliminary Findings

  • Ramesh Paudyal,
  • Amaresha Shridhar Konar,
  • Nancy A. Obuchowski,
  • Vaios Hatzoglou,
  • Thomas L. Chenevert,
  • Dariya I. Malyarenko,
  • Scott D. Swanson,
  • Eve LoCastro,
  • Sachin Jambawalikar and
  • Amita Shukla-Dave
  • + 4 authors

The aim of this study was to establish the repeatability measures of quantitative Gaussian and non-Gaussian diffusion metrics using diffusion-weighted imaging (DWI) data from phantoms and patients with head-and-neck and papillary thyroid cancers. The...

  • Article
  • Open Access
7 Citations
1,647 Views
10 Pages

Quantitative Non-Gaussian Intravoxel Incoherent Motion Diffusion-Weighted Imaging Metrics and Surgical Pathology for Stratifying Tumor Aggressiveness in Papillary Thyroid Carcinomas

  • David Aramburu Núñez,
  • Yonggang Lu,
  • Ramesh Paudyal,
  • Vaios Hatzoglou,
  • Andre L. Moreira,
  • Jung Hun Oh,
  • Hilda E. Stambuk,
  • Yousef Mazaheri,
  • Mithat Gonen and
  • Amita Shukla-Dave
  • + 3 authors

We assessed a priori aggressive features using quantitative diffusion-weighted imaging metrics to preclude an active surveillance management approach in patients with papillary thyroid cancer (PTC) with tumor size 1–2 cm. This prospective study enrol...

  • Article
  • Open Access
14 Citations
1,603 Views
8 Pages

Multicenter Repeatability Study of a Novel Quantitative Diffusion Kurtosis Imaging Phantom

  • Dariya I. Malyarenko,
  • Scott D. Swanson,
  • Amaresha S. Konar,
  • Eve LoCastro,
  • Ramesh Paudyal,
  • Michael Z. Liu,
  • Sachin R. Jambawalikar,
  • Lawrence H. Schwartz,
  • Amita Shukla-Dave and
  • Thomas L. Chenevert

Quantitative kurtosis phantoms are sought by multicenter clinical trials to establish accuracy and precision of quantitative imaging biomarkers on the basis of diffusion kurtosis imaging (DKI) parameters. We designed and evaluated precision, reproduc...

  • Article
  • Open Access
6 Citations
1,724 Views
9 Pages

Magnetization Transfer MRI of Breast Cancer in the Community Setting: Reproducibility and Preliminary Results in Neoadjuvant Therapy

  • John Virostko,
  • Anna G. Sorace,
  • Chengyue Wu,
  • David Ekrut,
  • Angela M. Jarrett,
  • Raghave M. Upadhyaya,
  • Sarah Avery,
  • Debra Patt,
  • Boone Goodgame and
  • Thomas E. Yankeelov

Repeatability and reproducibility of magnetization transfer magnetic resonance imaging of the breast, and the ability of this technique to assess the response of locally advanced breast cancer to neoadjuvant therapy (NAT), are determined. Reproducibi...

  • Article
  • Open Access
25 Citations
2,044 Views
8 Pages

Assessing Treatment Response of Glioblastoma to an HDAC Inhibitor Using Whole-Brain Spectroscopic MRI

  • Saumya S. Gurbani,
  • Younghyoun Yoon,
  • Brent D. Weinberg,
  • Eric Salgado,
  • Robert H. Press,
  • J. Scott Cordova,
  • Karthik K. Ramesh,
  • Zhongxing Liang,
  • Jose Velazquez Vega and
  • Hui-Kuo G. Shu
  • + 4 authors

Histone deacetylases regulate a wide variety of cellular functions and have been implicated in redifferentiation of various tumors. Histone deacetylase inhibitors (HDACi) are potential pharmacologic agents to improve outcomes for patients with glioma...

  • Article
  • Open Access
11 Citations
1,463 Views
7 Pages

Real-Time Quantitative Assessment of Accuracy and Precision of Blood Volume Derived from DCE-MRI in Individual Patients during a Clinical Trial

  • Madhava P. Aryal,
  • Choonik Lee,
  • Peter G. Hawkins,
  • Christina Chapman,
  • Avraham Eisbruch,
  • Michelle Mierzwa and
  • Yue Cao

Accuracy and precision of quantitative imaging (QI) metrics should be assessed in real time in each patient during a clinical trial to support QI-based decision-making. We developed a framework for real-time quantitative assessment of QI metrics and...

  • Article
  • Open Access
18 Citations
1,848 Views
9 Pages

Habitats in DCE-MRI to Predict Clinically Significant Prostate Cancers

  • Nestor Andres Parra,
  • Hong Lu,
  • Jung Choi,
  • Kenneth Gage,
  • Julio Pow-Sang,
  • Robert J. Gillies and
  • Yoganand Balagurunathan

Prostate cancer identification and assessment of clinical significance continues to be a challenge. Routine multiparametric magnetic resonance imaging has shown to be useful in assessing disease progression. Although dynamic contrast-enhanced imaging...

  • Article
  • Open Access
14 Citations
1,823 Views
13 Pages

Phantom Validation of DCE-MRI Magnitude and Phase-Based Vascular Input Function Measurements

  • Warren Foltz,
  • Brandon Driscoll,
  • Sangjune Laurence Lee,
  • Krishna Nayak,
  • Naren Nallapareddy,
  • Ali Fatemi,
  • Cynthia Ménard,
  • Catherine Coolens and
  • Caroline Chung

Accurate, patient-specific measurement of arterial input functions (AIF) may improve model-based analysis of vascular permeability. This study investigated factors affecting AIF measurements from magnetic resonance imaging (MRI) magnitude (AIFMAGN) a...

  • Article
  • Open Access
31 Citations
1,677 Views
9 Pages

Early Prediction of Breast Cancer Therapy Response using Multiresolution Fractal Analysis of DCE-MRI Parametric Maps

  • Archana Machireddy,
  • Guillaume Thibault,
  • Alina Tudorica,
  • Aneela Afzal,
  • May Mishal,
  • Kathleen Kemmer,
  • Arpana Naik,
  • Megan Troxell,
  • Eric Goranson and
  • Xubo Song
  • + 5 authors

We aimed to determine whether multiresolution fractal analysis of voxel-based dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) parametric maps can provide early prediction of breast cancer response to neoadjuvant chemotherapy (NACT). In...

  • Article
  • Open Access
20 Citations
1,565 Views
11 Pages

The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II

  • Wei Huang,
  • Yiyi Chen,
  • Andriy Fedorov,
  • Xia Li,
  • Guido H. Jajamovich,
  • Dariya I. Malyarenko,
  • Madhava P. Aryal,
  • Peter S. LaViolette,
  • Matthew J. Oborski and
  • Xin Li
  • + 19 authors

1 March 2019

This multicenter study evaluated the effect of variations in arterial input function (AIF) determination on pharmacokinetic (PK) analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) data using the shutter-speed model (SSM). Data...

  • Article
  • Open Access
27 Citations
2,167 Views
8 Pages

Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO)

  • Laura C. Bell,
  • Natenael Semmineh,
  • Hongyu An,
  • Cihat Eldeniz,
  • Richard Wahl,
  • Kathleen M. Schmainda,
  • Melissa A. Prah,
  • Bradley J. Erickson,
  • Panagiotis Korfiatis and
  • C. Chad Quarles
  • + 18 authors

1 March 2019

The use of rCBV as a response metric in clinical trials has been hampered, in part, due to variations in the biomarker consistency and associated interpretation across sites, stemming from differences in image acquisition and post-processing methods....

  • Article
  • Open Access
28 Citations
1,748 Views
9 Pages

Developing a Pipeline for Multiparametric MRI-Guided Radiation Therapy: Initial Results from a Phase II Clinical Trial in Newly Diagnosed Glioblastoma

  • Michelle M. Kim,
  • Hemant A. Parmar,
  • Madhava P. Aryal,
  • Charles S. Mayo,
  • James M. Balter,
  • Theodore S. Lawrence and
  • Yue Cao

1 March 2019

Quantitative mapping of hyperperfused and hypercellular regions of glioblastoma has been proposed to improve definition of tumor regions at risk for local recurrence following conventional radiation therapy. As the processing of the multiparametric d...

  • Article
  • Open Access
46 Citations
2,422 Views
8 Pages

Gleason Probability Maps: A Radiomics Tool for Mapping Prostate Cancer Likelihood in MRI Space

  • Sean D. McGarry,
  • John D. Bukowy,
  • Kenneth A. Iczkowski,
  • Jackson G. Unteriner,
  • Petar Duvnjak,
  • Allison K. Lowman,
  • Kenneth Jacobsohn,
  • Mark Hohenwalter,
  • Michael O. Griffin and
  • Peter S. LaViolette
  • + 7 authors

1 March 2019

Prostate cancer is the most common noncutaneous cancer in men in the United States. The current paradigm for screening and diagnosis is imperfect, with relatively low specificity, high cost, and high morbidity. This study aims to generate new image c...

  • Article
  • Open Access
33 Citations
2,766 Views
10 Pages

Multiparameter MRI Predictors of Long-Term Survival in Glioblastoma Multiforme

  • Olya Stringfield,
  • John A. Arrington,
  • Sandra K. Johnston,
  • Nicolas G. Rognin,
  • Noah C. Peeri,
  • Yoganand Balagurunathan,
  • Pamela R. Jackson,
  • Kamala R. Clark-Swanson,
  • Kristin R. Swanson and
  • Natarajan Raghunand
  • + 2 authors

1 March 2019

Standard-of-care multiparameter magnetic resonance imaging (MRI) scans of the brain were used to objectively subdivide glioblastoma multiforme (GBM) tumors into regions that correspond to variations in blood flow, interstitial edema, and cellular den...

  • Article
  • Open Access
33 Citations
2,455 Views
9 Pages

[18F] FDG Positron Emission Tomography (PET) Tumor and Penumbra Imaging Features Predict Recurrence in Non–Small Cell Lung Cancer

  • Sarah A. Mattonen,
  • Guido A. Davidzon,
  • Shaimaa Bakr,
  • Sebastian Echegaray,
  • Ann N.C. Leung,
  • Minal Vasanawala,
  • George Horng,
  • Sandy Napel and
  • Viswam S. Nair

1 March 2019

We identified computational imaging features on 18F-fluorodeoxyglucose positron emission tomography (PET) that predict recurrence/progression in non–small cell lung cancer (NSCLC). We retrospectively identified 291 patients with NSCLC from 2 prospect...

  • Article
  • Open Access
3 Citations
1,171 Views
7 Pages

Bias in PET Images of Solid Phantoms Due to CT-Based Attenuation Correction

  • Darrin W. Byrd,
  • John J. Sunderland,
  • Tzu-Cheng Lee and
  • Paul E. Kinahan

1 March 2019

The use of computed tomography (CT) images to correct for photon attenuation in positron emission tomography (PET) produces unbiased patient images, but it is not optimal for synthetic materials. For test objects made from epoxy, image bias and artif...

  • Article
  • Open Access
32 Citations
1,745 Views
9 Pages

FLT PET Radiomics for Response Prediction to Chemoradiation Therapy in Head and Neck Squamous Cell Cancer

  • Ethan J. Ulrich,
  • Yusuf Menda,
  • Laura L. Boles Ponto,
  • Carryn M. Anderson,
  • Brian J. Smith,
  • John J. Sunderland,
  • Michael M. Graham,
  • John M. Buatti and
  • Reinhard R. Beichel

1 March 2019

Radiomics is an image analysis approach for extracting large amounts of quantitative information from medical images using a variety of computational methods. Our goal was to evaluate the utility of radiomic feature analysis from 18F-fluorothymidine...

  • Article
  • Open Access
37 Citations
2,565 Views
14 Pages

ePAD: An Image Annotation and Analysis Platform for Quantitative Imaging

  • Daniel L. Rubin,
  • Mete Ugur Akdogan,
  • Cavit Altindag and
  • Emel Alkim

1 March 2019

Medical imaging is critical for assessing the response of patients to new cancer therapies. Quantitative lesion assessment on images is time-consuming, and adopting new promising quantitative imaging biomarkers of response in clinical trials is chall...

  • Article
  • Open Access
40 Citations
2,266 Views
8 Pages

The Brain Imaging Collaboration Suite (BrICS): A Cloud Platform for Integrating Whole-Brain Spectroscopic MRI into the Radiation Therapy Planning Workflow

  • Saumya Gurbani,
  • Brent Weinberg,
  • Lee Cooper,
  • Eric Mellon,
  • Eduard Schreibmann,
  • Sulaiman Sheriff,
  • Andrew Maudsley,
  • Mohammed Goryawala,
  • Hui-Kuo Shu and
  • Hyunsuk Shim

1 March 2019

Glioblastoma has poor prognosis with inevitable local recurrence despite aggressive treatment with surgery and chemoradiation. Radiation therapy (RT) is typically guided by contrast-enhanced T1-weighted magnetic resonance imaging (MRI) for defining t...

  • Article
  • Open Access
30 Citations
1,914 Views
9 Pages

Explaining Deep Features Using Radiologist-Defined Semantic Features and Traditional Quantitative Features

  • Rahul Paul,
  • Matthew Schabath,
  • Yoganand Balagurunathan,
  • Ying Liu,
  • Qian Li,
  • Robert Gillies,
  • Lawrence O. Hall and
  • Dmitry B. Goldgof

1 March 2019

Quantitative features are generated from a tumor phenotype by various data characterization, feature-extraction approaches and have been used successfully as a biomarker. These features give us information about a nodule, for example, nodule size, pi...

  • Article
  • Open Access
58 Citations
2,475 Views
8 Pages

Deep Learning Approach for Assessment of Bladder Cancer Treatment Response

  • Eric Wu,
  • Lubomir M. Hadjiiski,
  • Ravi K. Samala,
  • Heang-Ping Chan,
  • Kenny H. Cha,
  • Caleb Richter,
  • Richard H. Cohan,
  • Elaine M. Caoili,
  • Chintana Paramagul and
  • Alon Z. Weizer
  • + 1 author

1 March 2019

We compared the performance of different Deep learning-convolutional neural network (DL-CNN) models for bladder cancer treatment response assessment based on transfer learning by freezing different DL-CNN layers and varying the DL-CNN structure. Pre-...

  • Article
  • Open Access
2 Citations
1,022 Views
11 Pages

1 March 2019

Quantitative kinetic parameters derived from dynamic contrast-enhanced (DCE) data are dependent on signal measurement quality and choice of pharmacokinetic model. However, the fundamental optimization analysis method is equally important and its impa...

  • Article
  • Open Access
3 Citations
1,164 Views
6 Pages

1 March 2019

Quantitative imaging biomarkers are increasingly used in oncology clinical trials to assist the evaluation of tumor responses to novel therapies. To identify these biomarkers and ensure smooth clinical translation once they have been validated, it is...

  • Article
  • Open Access
33 Citations
1,721 Views
6 Pages

1 March 2019

We studied the reliability of radiomic features on abdominal computed tomography (CT) images reconstructed with multiple CT image acquisition settings using the ACR (American College of Radiology) CT Phantom. Twenty-four sets of CT images of the ACR...

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Tomography - ISSN 2379-139X