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  • Tomography is published by MDPI from Volume 7 Issue 1 (2021). Previous articles were published by another publisher in Open Access under a CC-BY (or CC-BY-NC-ND) licence, and they are hosted by MDPI on mdpi.com as a courtesy and upon agreement with Grapho, LLC.

Tomography, Volume 6, Issue 2

2020 June - 26 articles

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Articles (26)

  • Perspective
  • Open Access
1 Citations
1,043 Views
4 Pages

The National Cancer Institute's Quantitative Imaging Network (QIN) has thrived over the past 12 years with an emphasis on the development of image-based decision support software tools for improving measurements of imaging metrics. An overarching goa...

  • Article
  • Open Access
3 Citations
2,054 Views
5 Pages

Clinical Trial Design and Development Work Group Within the Quantitative Imaging Network

  • Ella F. Jones,
  • John M. Buatti,
  • Hui-Kuo Shu,
  • Richard L. Wahl,
  • Brenda F. Kurland,
  • Hannah M. Linden,
  • David A. Mankoff,
  • Daniel L. Rubin,
  • Darrell Tata and
  • Lawrence H. Schwartz
  • + 3 authors

The Clinical Trial Design and Development Working Group within the Quantitative Imaging Network focuses on providing support for the development, validation, and harmonization of quantitative imaging (QI) methods and tools for use in cancer clinical...

  • Article
  • Open Access
5 Citations
1,674 Views
12 Pages

Multisite Technical and Clinical Performance Evaluation of Quantitative Imaging Biomarkers from 3D FDG PET Segmentations of Head and Neck Cancer Images

  • Brian J. Smith,
  • John M. Buatti,
  • Christian Bauer,
  • Ethan J. Ulrich,
  • Payam Ahmadvand,
  • Mikalai M. Budzevich,
  • Robert J. Gillies,
  • Dmitry Goldgof,
  • Milan Grkovski and
  • Reinhard R. Beichel
  • + 10 authors

Quantitative imaging biomarkers (QIBs) provide medical image–derived intensity, texture, shape, and size features that may help characterize cancerous tumors and predict clinical outcomes. Successful clinical translation of QIBs depends on the robust...

  • Article
  • Open Access
12 Citations
1,838 Views
9 Pages

Impact of MRI Protocol Adherence on Prediction of Pathological Complete Response in the I-SPY 2 Neoadjuvant Breast Cancer Trial

  • Natsuko Onishi,
  • Wen Li,
  • Jessica Gibbs,
  • Lisa J. Wilmes,
  • Alex Nguyen,
  • Ella F. Jones,
  • Vignesh Arasu,
  • John Kornak,
  • Bonnie N. Joe and
  • Nola M. Hylton
  • + 2 authors

We investigated the impact of magnetic resonance imaging (MRI) protocol adherence on the ability of functional tumor volume (FTV), a quantitative measure of tumor burden measured from dynamic contrast-enhanced MRI, to predict response to neoadjuvant...

  • Article
  • Open Access
14 Citations
1,430 Views
7 Pages

Retrospective Correction of ADC for Gradient Nonlinearity Errors in Multicenter Breast DWI Trials: ACRIN6698 Multiplatform Feasibility Study

  • Dariya I. Malyarenko,
  • David C. Newitt,
  • Ghoncheh Amouzandeh,
  • Lisa J. Wilmes,
  • Ek T. Tan,
  • Luca Marinelli,
  • Ajit Devaraj,
  • Johannes M. Peeters,
  • Shivraman Giri and
  • Thomas L. Chenevert
  • + 3 authors

The presented analysis of multisite, multiplatform clinical oncology trial data sought to enhance quantitative utility of the apparent diffusion coefficient (ADC) metric, derived from diffusion-weighted magnetic resonance imaging, by reducing technic...

  • Article
  • Open Access
10 Citations
1,611 Views
8 Pages

The Longitudinal Imaging Tracker (BrICS-LIT):A Cloud Platform for Monitoring Treatment Response in Glioblastoma Patients

  • Karthik Ramesh,
  • Saumya S. Gurbani,
  • Eric A. Mellon,
  • Vicki Huang,
  • Mohammed Goryawala,
  • Peter B. Barker,
  • Lawrence Kleinberg,
  • Hui-Kuo G. Shu,
  • Hyunsuk Shim and
  • Brent D. Weinberg

Glioblastoma is a common and aggressive form of brain cancer affecting up to 20,000 new patients in the US annually. Despite rigorous therapies, current median survival is only 15–20 months. Patients who complete initial treatment undergo follow-up i...

  • Article
  • Open Access
10 Citations
1,703 Views
10 Pages

Comparison of Segmentation Methods in Assessing Background Parenchymal Enhancement as a Biomarker for Response to Neoadjuvant Therapy

  • Alex Anh-Tu Nguyen,
  • Vignesh A. Arasu,
  • Fredrik Strand,
  • Wen Li,
  • Natsuko Onishi,
  • Jessica Gibbs,
  • Ella F. Jones,
  • Bonnie N. Joe,
  • Laura J. Esserman and
  • Nola M. Hylton
  • + 1 author

1 June 2020

Breast parenchymal enhancement (BPE) has shown association with breast cancer risk and response to neoadjuvant treatment. However, BPE quantification is challenging, and there is no standardized segmentation method for measurement. We investigated th...

  • Article
  • Open Access
13 Citations
1,984 Views
7 Pages

Stanford DRO Toolkit: Digital Reference Objects for Standardization of Radiomic Features

  • Akshay Jaggi,
  • Sarah A. Mattonen,
  • Michael McNitt-Gray and
  • Sandy Napel

1 June 2020

Several institutions have developed image feature extraction software to compute quantitative descriptors of medical images for radiomics analyses. With radiomics increasingly proposed for use in research and clinical contexts, new techniques are nec...

  • Article
  • Open Access
67 Citations
3,277 Views
11 Pages

Standardization in Quantitative Imaging: A Multicenter Comparison of Radiomic Features from Different Software Packages on Digital Reference Objects and Patient Data Sets

  • M. McNitt-Gray,
  • S. Napel,
  • A. Jaggi,
  • S.A. Mattonen,
  • L. Hadjiiski,
  • M. Muzi,
  • D. Goldgof,
  • Y. Balagurunathan,
  • L.A. Pierce and
  • K. Farahani
  • + 19 authors

1 June 2020

Radiomic features are being increasingly studied for clinical applications. We aimed to assess the agreement among radiomic features when computed by several groups by using different software packages under very tightly controlled conditions, which...

  • Article
  • Open Access
23 Citations
2,064 Views
10 Pages

Computational Modeling of Interstitial Fluid Pressure and Velocity in Head and Neck Cancer Based on Dynamic Contrast-Enhanced Magnetic Resonance Imaging: Feasibility Analysis

  • Eve LoCastro,
  • Ramesh Paudyal,
  • Yousef Mazaheri,
  • Vaios Hatzoglou,
  • Jung Hun Oh,
  • Yonggang Lu,
  • Amaresha Shridhar Konar,
  • Kira vom Eigen,
  • Alan Ho and
  • Amita Shukla-Dave
  • + 3 authors

1 June 2020

We developed and tested the feasibility of computational fluid modeling (CFM) based on dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) for quantitative estimation of interstitial fluid pressure (IFP) and velocity (IFV) in patients with...

  • Article
  • Open Access
7 Citations
1,622 Views
9 Pages

Intrasession Reliability of Arterial Spin-Labeled MRI–Measured Noncontrast Perfusion in Glioblastoma at 3 T

  • Limin Zhou,
  • Yiming Wang,
  • Marco C. Pinho,
  • Edward Pan,
  • Yin Xi,
  • Joseph A. Maldjian and
  • Ananth J. Madhuranthakam

1 June 2020

Arterial spin-labeled magnetic resonance imaging can provide quantitative perfusion measurements in the brain and can be potentially used to evaluate therapy response assessment in glioblastoma (GBM). The reliability and reproducibility of this metho...

  • Article
  • Open Access
19 Citations
1,812 Views
12 Pages

Discrimination of Malignant and Benign Breast Lesions Using Quantitative Multiparametric MRI: A Preliminary Study

  • Kurt Li,
  • Archana Machireddy,
  • Alina Tudorica,
  • Brendan Moloney,
  • Karen Y. Oh,
  • Neda Jafarian,
  • Savannah C. Partridge,
  • Xin Li and
  • Wei Huang

1 June 2020

We aimed to compare diagnostic performance in discriminating malignant and benign breast lesions between two intravoxel incoherent motion (IVIM) analysis methods for diffusion-weighted magnetic resonance imaging (DW-MRI) data and between DW- and dyna...

  • Article
  • Open Access
40 Citations
2,339 Views
10 Pages

Radiomic Features of Multiparametric MRI Present Stable Associations with Analogous Histological Features in Patients with Brain Cancer

  • Samuel A. Bobholz,
  • Allison K. Lowman,
  • Alexander Barrington,
  • Michael Brehler,
  • Sean McGarry,
  • Elizabeth J. Cochran,
  • Jennifer Connelly,
  • Wade M. Mueller,
  • Mohit Agarwal and
  • Peter S. LaViolette
  • + 3 authors

1 June 2020

Magnetic resonance (MR)-derived radiomic features have shown substantial predictive utility in modeling different prognostic factors of glioblastoma and other brain cancers. However, the biological relationship underpinning these predictive models ha...

  • Article
  • Open Access
4 Citations
1,308 Views
7 Pages

Quantitative Comparison of Prone and Supine PERCIST Measurements in Breast Cancer

  • Jennifer G. Whisenant,
  • Jason M. Williams,
  • Hakmook Kang,
  • Lori R. Arlinghaus,
  • Richard G. Abramson,
  • Vandana G. Abramson,
  • Kareem Fakhoury,
  • A. Bapsi Chakravarthy and
  • Thomas E. Yankeelov

1 June 2020

Positron emission tomography (PET) is typically performed in the supine position. However, breast magnetic resonance imaging (MRI) is performed in prone, as this improves visibility of deep breast tissues. With the emergence of hybrid scanners that i...

  • Article
  • Open Access
13 Citations
1,794 Views
9 Pages

Repeatability and Reproducibility of ADC Histogram Metrics from the ACRIN 6698 Breast Cancer Therapy Response Trial

  • David C. Newitt,
  • Ghoncheh Amouzandeh,
  • Savannah C. Partridge,
  • Helga S. Marques,
  • Benjamin A. Herman,
  • Brian D. Ross,
  • Nola M. Hylton,
  • Thomas L. Chenevert and
  • Dariya I. Malyarenko

1 June 2020

Mean tumor apparent diffusion coefficient (ADC) of breast cancer showed excellent repeatability but only moderate predictive power for breast cancer therapy response in the ACRIN 6698 multicenter imaging trial. Previous single-center studies have sho...

  • Article
  • Open Access
82 Citations
4,231 Views
8 Pages

A Fully Automated Deep Learning Network for Brain Tumor Segmentation

  • Chandan Ganesh Bangalore Yogananda,
  • Bhavya R. Shah,
  • Maryam Vejdani-Jahromi,
  • Sahil S. Nalawade,
  • Gowtham K. Murugesan,
  • Frank F. Yu,
  • Marco C. Pinho,
  • Benjamin C. Wagner,
  • Kyrre E. Emblem and
  • Joseph A. Maldjian
  • + 3 authors

1 June 2020

We developed a fully automated method for brain tumor segmentation using deep learning; 285 brain tumor cases with multiparametric magnetic resonance images from the BraTS2018 data set were used. We designed 3 separate 3D-Dense-UNets to simplify the...

  • Article
  • Open Access
19 Citations
1,917 Views
9 Pages

Intraobserver Variability in Bladder Cancer Treatment Response Assessment With and Without Computerized Decision Support

  • Lubomir M. Hadjiiski,
  • Kenny H. Cha,
  • Richard H. Cohan,
  • Heang-Ping Chan,
  • Elaine M. Caoili,
  • Matthew S. Davenport,
  • Ravi K. Samala,
  • Alon Z. Weizer,
  • Ajjai Alva and
  • Phillip L. Palmbos
  • + 7 authors

1 June 2020

We evaluated the intraobserver variability of physicians aided by a computerized decision-support system for treatment response assessment (CDSS-T) to identify patients who show complete response to neoadjuvant chemotherapy for bladder cancer, and th...

  • Article
  • Open Access
11 Citations
1,952 Views
6 Pages

Evaluating the Use of rCBV as a Tumor Grade and Treatment Response Classifier Across NCI Quantitative Imaging Network Sites: Part II of the DSC-MRI Digital Reference Object (DRO) Challenge

  • Laura C. Bell,
  • Natenael Semmineh,
  • Hongyu An,
  • Cihat Eldeniz,
  • Richard Wahl,
  • Kathleen M. Schmainda,
  • Melissa A. Prah,
  • Bradley J. Erickson,
  • Panagiotis Korfiatis and
  • C. Chad Quarles
  • + 18 authors

1 June 2020

We have previously characterized the reproducibility of brain tumor relative cerebral blood volume (rCBV) using a dynamic susceptibility contrast magnetic resonance imaging digital reference object across 12 sites using a range of imaging protocols a...

  • Article
  • Open Access
7 Citations
1,674 Views
7 Pages

Lung Nodule Sizes Are Encoded When Scaling CT Image for CNN's

  • Dmitry Cherezov,
  • Rahul Paul,
  • Nikolai Fetisov,
  • Robert J. Gillies,
  • Matthew B. Schabath,
  • Dmitry B. Goldgof and
  • Lawrence O. Hall

1 June 2020

Noninvasive diagnosis of lung cancer in early stages is one task where radiomics helps. Clinical practice shows that the size of a nodule has high predictive power for malignancy. In the literature, convolutional neural networks (CNNs) have become wi...

  • Article
  • Open Access
16 Citations
1,975 Views
7 Pages

Tumor Sphericity Predicts Response in Neoadjuvant Chemotherapy for Invasive Breast Cancer

  • Wen Li,
  • David C. Newitt,
  • Bo La Yun,
  • Ella F. Jones,
  • Vignesh Arasu,
  • Lisa J. Wilmes,
  • Jessica Gibbs,
  • Alex Anh-Tu Nguyen,
  • Natsuko Onishi and
  • Nola M. Hylton
  • + 3 authors

1 June 2020

This retrospective study examined magnetic resonance imaging (MRI)–derived tumor sphericity (SPH) as a quantitative measure of breast tumor morphology, and investigated the association between SPH and reader-assessed morphological pattern (MP). In ad...

  • Article
  • Open Access
30 Citations
2,617 Views
8 Pages

Radiomics Prediction of EGFR Status in Lung Cancer—Our Experience in Using Multiple Feature Extractors and The Cancer Imaging Archive Data

  • Lin Lu,
  • Shawn H. Sun,
  • Hao Yang,
  • Linning E,
  • Pingzhen Guo,
  • Lawrence H. Schwartz and
  • Binsheng Zhao

1 June 2020

We investigated the performance of multiple radiomics feature extractors/software on predicting epidermal growth factor receptor mutation status in 228 patients with non–small cell lung cancer from publicly available data sets in The Cancer Imaging A...

  • Article
  • Open Access
13 Citations
1,702 Views
10 Pages

Diffusion-Weighted Echo Planar Imaging Using Multiplexed Sensitivity Encoding and Reverse Polarity Gradient in Head Andneck Cancer: An Initial Study

  • Amaresha Shridhar Konar,
  • Maggie Fung,
  • Ramesh Paudyal,
  • Jung Hun Oh,
  • Yousef Mazaheri,
  • Vaios Hatzoglou and
  • Amita Shukla-Dave

1 June 2020

We aimed to compare the geometric distortion (GD) correction performance and apparent diffusion coefficient (ADC) measurements of single-shot diffusion-weighted echo-planar imaging (SS-DWEPI), multiplexed sensitivity encoding (MUSE)-DWEPI, and MUSE-D...

  • Article
  • Open Access
4 Citations
1,543 Views
9 Pages

4D-CT Attenuation Correction in Respiratory-Gated PET for Hypoxia Imaging: Is It Really Beneficial?

  • Brandon Driscoll,
  • Douglass Vines,
  • Tina Shek,
  • Julia Publicover,
  • Ivan Yeung,
  • Stephen Breen and
  • David Jaffray

1 June 2020

Previous literature has shown that 4D respiratory-gated positron emission tomography (PET) is beneficial for quantitative analysis and defining targets for boosting therapy. However the case for addition of a phase-matched 4D-computed tomography (CT)...

  • Article
  • Open Access
10 Citations
1,559 Views
11 Pages

Deep Feature Stability Analysis Using CT Images of a Physical Phantom across Scanner Manufacturers, Cartridges, Pixel Sizes, and Slice Thickness

  • Rahul Paul,
  • Mohammed Shafiq-Ul Hassan,
  • Eduardo G. Moros,
  • Robert J. Gillies,
  • Lawrence O. Hall and
  • Dmitry B. Goldgof

1 June 2020

Image acquisition parameters for computed tomography scans such as slice thickness and field of view may vary depending on tumor size and site. Recent studies have shown that some radiomics features were dependent on voxel size (= pixel size × slice...

  • Article
  • Open Access
14 Citations
1,781 Views
11 Pages

Diffusion-Weighted and Dynamic Contrast-Enhanced MRI Derived Imaging Metrics for Stereotactic Body Radiotherapy of Pancreatic Ductal Adenocarcinoma: Preliminary Findings

  • Richard Kinh Do,
  • Marsha Reyngold,
  • Ramesh Paudyal,
  • Jung Hun Oh,
  • Amaresha Shridhar Konar,
  • Eve LoCastro,
  • Karyn A. Goodman and
  • Amita Shukla-Dave

1 June 2020

We aimed to assess longitudinal changes in quantitative imaging metric values obtained from diffusion-weighted (DW-) and dynamic contrast-enhanced magnetic resonance imaging (DCE)-MRI at pre-treatment (TX[0]), immediately after the first fraction of...

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Tomography - ISSN 2379-139X