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BioMedInformatics, Volume 3, Issue 2

2023 June - 16 articles

Cover Story: DeepMind proposed AlphaFold in 2018 and the improved AlphaFold2 in 2021, a new groundbreaking method of protein structure prediction based on deep learning. This allowed researchers to identify to numerous derivatives. At that time, general newspapers such as “The Time” declared that the “Protein folding problem is solved”. However, numerous limitations of the algorithm have emerged since, for example, its applicability and the lack of data available for specific cases. As a consequence, Alphafold2, despite being a very important and impressive tool, must be improved and not be blindly used, but in conjunction with other classical approaches. View this paper
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Articles (16)

  • Article
  • Open Access
31 Citations
4,458 Views
15 Pages

Myocardial Infarction (MI) is the death of the heart muscle caused by lack of oxygenated blood flow to the heart muscle. It has been the main cause of death worldwide. The fastest way to detect MI is by using an electrocardiogram (ECG) device, which...

  • Article
  • Open Access
2 Citations
2,237 Views
11 Pages

Uncovering Disease-Related Polymorphisms through Correlations between SNP Frequencies, Population and Epidemiological Data

  • Samara Marques Dos Reis,
  • Cristhian Augusto Bugs,
  • José Artur Bogo Chies and
  • Andrés Delgado Cañedo

Background: According to GWAS, which analyzes large amounts of DNA variants in case-control strategies, the genetic differences between two human individuals do not exceed 0.5%. As a consequence, finding biological significance in GWAS results is a c...

  • Article
  • Open Access
8 Citations
4,022 Views
12 Pages

Automatic Facial Palsy, Age and Gender Detection Using a Raspberry Pi

  • Ali Saber Amsalam,
  • Ali Al-Naji,
  • Ammar Yahya Daeef and
  • Javaan Chahl

Facial palsy (FP) is a neurological disorder that affects the facial nerve, specifically the seventh nerve, resulting in the patient losing control of the facial muscles on one side of the face. It is an annoying condition that can occur in both chil...

  • Article
  • Open Access
8 Citations
7,944 Views
9 Pages

An IoT-Based Automatic and Continuous Urine Measurement System

  • Alexander Lee,
  • Melissa Lee and
  • Hsi-Jen James Yeh

Urine output is an important indicator of renal function. In hospitals, urine is collected using a catheter connected to a urine collection bag that has volume gradation markings. This type of visual measurement has low levels of accuracy and is labo...

  • Article
  • Open Access
2 Citations
3,762 Views
12 Pages

Integrative Molecular Analysis of DNA Methylation Dynamics Unveils Molecules with Prognostic Potential in Breast Cancer

  • Rashid Mehmood,
  • Alanoud Alsaleh,
  • Muzamil Y. Want,
  • Ijaz Ahmad,
  • Sami Siraj,
  • Muhammad Ishtiaq,
  • Faizah A. Alshehri,
  • Muhammad Naseem and
  • Noriko Yasuhara

DNA methylation acts as a major epigenetic modification in mammals, characterized by the transfer of a methyl group to a cytosine. DNA methylation plays a pivotal role in regulating normal development, and misregulation in cells leads to an abnormal...

  • Article
  • Open Access
6 Citations
4,169 Views
12 Pages

In this study, we propose a closed-loop insulin administration framework for multiple daily injection (MDI) treatment using a reinforcement learning (RL) agent for insulin bolus therapy. The RL agent, based on the soft actor–critic (SAC) algori...

  • Article
  • Open Access
10 Citations
4,492 Views
17 Pages

Generation of Musculoskeletal Ultrasound Images with Diffusion Models

  • Sofoklis Katakis,
  • Nikolaos Barotsis,
  • Alexandros Kakotaritis,
  • Panagiotis Tsiganos,
  • George Economou,
  • Elias Panagiotopoulos and
  • George Panayiotakis

The recent advances in deep learning have revolutionised computer-aided diagnosis in medical imaging. However, deep learning approaches to unveil their full potential require significant amounts of data, which can be a challenging task in some scient...

  • Systematic Review
  • Open Access
14 Citations
24,827 Views
14 Pages

Networks in Healthcare: A Systematic Review

  • Santhosh Kumar Rajamani and
  • Radha Srinivasan Iyer

Networks form the backbone of any healthcare system. Various databases were searched with relevant keywords, data were abstracted, and numerous papers were appraised for this synthesis. This compiled systematic review gives a comprehensive overview o...

  • Perspective
  • Open Access
13 Citations
8,195 Views
13 Pages

AlphaFold2 Update and Perspectives

  • Sébastien Tourlet,
  • Ragousandirane Radjasandirane,
  • Julien Diharce and
  • Alexandre G. de Brevern

Access to the three-dimensional (3D) structural information of macromolecules is of major interest in both fundamental and applied research. Obtaining this experimental data can be complex, time consuming, and costly. Therefore, in silico computation...

  • Brief Report
  • Open Access
2 Citations
2,060 Views
9 Pages

Breast cancer is the most prevalent form of cancer and the primary cause of cancer-related mortality among women globally. Breast cancer diagnosis involves multiple variables, making it a complex process. Therefore, the accurate estimation of feature...

  • Article
  • Open Access
6 Citations
3,997 Views
30 Pages

An Efficient COVID-19 Mortality Risk Prediction Model Using Deep Synthetic Minority Oversampling Technique and Convolution Neural Networks

  • Rajkumar Soundrapandiyan,
  • Adhiyaman Manickam,
  • Moulay Akhloufi,
  • Yarlagadda Vishnu Srinivasa Murthy,
  • Renuka Devi Meenakshi Sundaram and
  • Sivasubramanian Thirugnanasambandam

The COVID-19 virus has made a huge impact on people’s lives ever since the outbreak happened in December 2019. Unfortunately, the COVID-19 virus has not completely vanished from the world yet, and thus, global agitation is still increasing with...

  • Study Protocol
  • Open Access
1 Citations
3,095 Views
12 Pages

Status of Omics Research Capacity on Oral Cancer in Africa: A Systematic Scoping Review Protocol

  • Lawrence Achilles Nnyanzi,
  • Akinyele Olumuyiwa Adisa,
  • Kehinde Kazeem Kanmodi,
  • Timothy Olukunle Aladelusi,
  • Afeez Abolarinwa Salami,
  • Jimoh Amzat,
  • Claudio Angione,
  • Jacob Njideka Nwafor,
  • Peace Uwambaye and
  • Ruwan Duminda Jayasinghe
  • + 5 authors

Over the past decade, omics technologies such as genomics, epigenomics, transcriptomics, proteomics, and metabolomics have been used in the scientific understanding of diseases. While omics technologies have provided a useful tool for the diagnosis a...

  • Article
  • Open Access
4 Citations
4,919 Views
21 Pages

Evaluation of Transmembrane Protein Structural Models Using HPMScore

  • Stéphane Téletchéa,
  • Jérémy Esque,
  • Aurélie Urbain,
  • Catherine Etchebest and
  • Alexandre G. de Brevern

Transmembrane proteins (TMPs) are a class of essential proteins for biological and therapeutic purposes. Despite an increasing number of structures, the gap with the number of available sequences remains impressive. The choice of a dedicated function...

  • Brief Report
  • Open Access
6 Citations
3,296 Views
7 Pages

The restoration of osseous defects is accomplished by bone grafts and bone substitutes, which are also called biomaterials. Autogenous grafts, which are derived from the same individual, can retain the viability of cells, mainly the osteoblasts and o...

  • Article
  • Open Access
28 Citations
7,816 Views
19 Pages

The reduction of childhood mortality is an ongoing struggle and a commonly used factor in determining progress in the medical field. The under-5 mortality number is around 5 million around the world, with many of the deaths being preventable. In ligh...

  • Article
  • Open Access
2 Citations
2,720 Views
13 Pages

Sequence Motif Analysis of PRDM9 and Short Inverted Repeats Suggests Their Contribution to Human Microdeletion and Microduplication Syndromes

  • Paris Ladias,
  • Georgios S. Markopoulos,
  • Charilaos Kostoulas,
  • Ioanna Bouba,
  • Agis Georgiou,
  • Sofia Markoula and
  • Ioannis Georgiou

Holliday junctions are the first recognized templates of legitimate recombination. Their prime physiological role is meiotic homologous recombination, resulting in rearrangements of the genetic material. In humans, recombination hotspots follow a dis...

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BioMedInformatics - ISSN 2673-7426