Transcriptomics and Non-coding RNAs in Heart Failure

A special issue of Biomedicines (ISSN 2227-9059). This special issue belongs to the section "Molecular Genetics and Genetic Diseases".

Deadline for manuscript submissions: closed (30 June 2023) | Viewed by 4745

Special Issue Editor


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Guest Editor
1. Myocardial Dysfunction and Cardiac Transplantation Unit, Health Research Institute Hospital La Fe (IIS La Fe), Valencia, Spain
2. Center for Biomedical Research Network on Cardiovascular Diseases (CIBERCV), Madrid, Spain
Interests: heart failure; acute cellular rejection; Golgi apparatus; cardiomyopathy
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Special Issue Information

Dear Colleagues,

Heart failure is a shared chronic phase of cardiac functional impairment secondary to many etiologies and considered a serious global health challenge affecting at least 26 million people worldwide. Although many important advances in therapies and prevention have taken place during the last decade, mortality and morbidity are still high and the quality of life poor. Therefore, there is a need to develop new strategies for the management of this syndrome. In this sense, alterations in the gene expression of different pathways that can lead to heart failure are being studied. Gene expression requires precise regulation through selective and bidirectional transport between the nucleus and the cytoplasm, including membrane proteins, enzymes, ribosomal subunits, and different types of RNAs. Noncoding RNAs are emerging as potent and multifunctional regulators in all biological processes, and step by step, studies are unveiling associations between aberrant noncoding RNA expression and human diseases. Better known are miRNAs, where to date, emerging evidence has demonstrated that abnormal expression is associated with the pathological processes of cardiovascular diseases including heart failure, although their functional roles have not been completely understood. This can be contrasted to the lack of information around the expression of other sRNA as snoRNAs or scaRNAs, especially at the cardiac level.

Dr. Estefanía Tarazón
Guest Editor

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Keywords

  • gene expression
  • noncoding RNAs
  • transcriptomic
  • heart failure

Published Papers (2 papers)

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11 pages, 841 KiB  
Article
Implication of Sphingolipid Metabolism Gene Dysregulation and Cardiac Sphingosine-1-Phosphate Accumulation in Heart Failure
by Lorena Pérez-Carrillo, Isaac Giménez-Escamilla, Luis Martínez-Dolz, Ignacio José Sánchez-Lázaro, Manuel Portolés, Esther Roselló-Lletí and Estefanía Tarazón
Biomedicines 2022, 10(1), 135; https://doi.org/10.3390/biomedicines10010135 - 8 Jan 2022
Cited by 9 | Viewed by 2394
Abstract
Disturbances in sphingolipid metabolism lead to biological function dysregulation in many diseases, but it has not been described in heart failure (HF). Sphingosine-1-phosphate (S1P) levels have not ever been measured in the myocardium. Therefore, we analyze the gene dysregulation of human cardiac tissue [...] Read more.
Disturbances in sphingolipid metabolism lead to biological function dysregulation in many diseases, but it has not been described in heart failure (HF). Sphingosine-1-phosphate (S1P) levels have not ever been measured in the myocardium. Therefore, we analyze the gene dysregulation of human cardiac tissue by mRNA-seq (n = 36) and ncRNA-seq (n = 50). We observed most major changes in the expression of genes belonging to de novo and salvage pathways, and the tight gene regulation by their miRNAs is largely dysregulated in HF. We verified using ELISA (n = 41) that ceramide and S1P accumulate in HF cardiac tissue, with an increase in the ceramide/S1P ratio of 57% in HF. Additionally, changes in left ventricular mass and diameters are directly related to CERS1 expression and inversely related to S1P levels. Altogether, we define changes in the main components of the sphingolipid metabolism pathways in HF, mainly de novo and salvage, which lead to an increase in ceramide and S1P in cardiac tissue, as well as an increase in the ceramide/S1P ratio in HF patients. Therapeutic gene modulation focused on restoring ceramide levels or reversing the ceramide/S1P ratio could be a potential therapy to be explored for HF patients. Full article
(This article belongs to the Special Issue Transcriptomics and Non-coding RNAs in Heart Failure)
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Review

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14 pages, 1517 KiB  
Review
Comparative Analysis of Non-Coding RNA Transcriptomics in Heart Failure
by Carlos Garcia-Padilla, Estefanía Lozano-Velasco, Virginio Garcia-Lopez, Amelia Aranega, Diego Franco, Virginio Garcia-Martinez and Carmen Lopez-Sanchez
Biomedicines 2022, 10(12), 3076; https://doi.org/10.3390/biomedicines10123076 - 30 Nov 2022
Cited by 5 | Viewed by 1827
Abstract
Heart failure constitutes a clinical complex syndrome with different symptomatic characteristics depending on age, sex, race and ethnicity, among others, which has become a major public health issue with an increasing prevalence. One of the most interesting tools seeking to improve prevention, diagnosis, [...] Read more.
Heart failure constitutes a clinical complex syndrome with different symptomatic characteristics depending on age, sex, race and ethnicity, among others, which has become a major public health issue with an increasing prevalence. One of the most interesting tools seeking to improve prevention, diagnosis, treatment and prognosis of this pathology has focused on finding new molecular biomarkers since heart failure relies on deficient cardiac homeostasis, which is regulated by a strict gene expression. Therefore, currently, analyses of non-coding RNA transcriptomics have been oriented towards human samples. The present review develops a comparative study emphasizing the relevance of microRNAs, long non-coding RNAs and circular RNAs as potential biomarkers in heart failure. Significantly, further studies in this field of research are fundamental to supporting their widespread clinical use. In this sense, the various methodologies used by the authors should be standardized, including larger cohorts, homogeneity of the samples and uniformity of the bioinformatic pipelines used to reach stratification and statistical significance of the results. These basic adjustments could provide promising steps to designing novel strategies for clinical management of patients with heart failure. Full article
(This article belongs to the Special Issue Transcriptomics and Non-coding RNAs in Heart Failure)
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