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Combining Experimental Reaction Development with Quantum Chemistry and Machine Learning

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Physical Chemistry and Chemical Physics".

Deadline for manuscript submissions: closed (30 September 2023) | Viewed by 4996

Special Issue Editor


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Guest Editor
Instituto de Síntesis Química y Catálisis Homogénea (ISQCH) CSIC, Universidad de Zaragoza, C/Pedro Cerbuna 12, 50009 Zaragoza, Spain
Interests: DFT; reaction mechanisms; machine learning; quantum chemistry; physical organic chemistry; catalysis; organic synthesis; cheminformatics

Special Issue Information

Dear Colleagues,

This Special Issue welcomes synergic approaches containing experimental reaction development with quantum chemistry (QM) and/or machine learning (ML). Relevant examples might include studies in which QM mechanistic studies are employed to understand, improve or expand catalyzed reactions and organic synthesis. Furthermore, ML prediction of more efficient reaction components to improve reactivity and selectivity are similarly encouraged.

Dr. Juan Vicente Alegre-Requena
Guest Editor

Manuscript Submission Information

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Keywords

  • quantum chemistry
  • machine learning
  • experimental chemistry
  • mechanistic studies
  • reaction development
  • kinetic studies

Published Papers (3 papers)

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Research

9 pages, 1361 KiB  
Article
Investigating the Mechanism of Ni-Catalyzed Coupling of Photoredox-Generated Alkyl Radicals and Aryl Bromides: A Computational Study
by Nil Sanosa, Pedro Ruiz-Campos, Diego Ambrosi, Diego Sampedro and Ignacio Funes-Ardoiz
Int. J. Mol. Sci. 2023, 24(11), 9145; https://doi.org/10.3390/ijms24119145 - 23 May 2023
Cited by 1 | Viewed by 1466
Abstract
Photoredox catalysis has emerged as an alternative to classical cross-coupling reactions, promoting new reactivities. Recently, the use of widely abundant alcohols and aryl bromides as coupling reagents was demonstrated to promote efficient coupling through the Ir/Ni dual photoredox catalytic cycle. However, the mechanism [...] Read more.
Photoredox catalysis has emerged as an alternative to classical cross-coupling reactions, promoting new reactivities. Recently, the use of widely abundant alcohols and aryl bromides as coupling reagents was demonstrated to promote efficient coupling through the Ir/Ni dual photoredox catalytic cycle. However, the mechanism underlying this transformation is still unexplored, and here we report a comprehensive computational study of the catalytic cycle. We have shown that nickel catalysts can promote this reactivity very efficiently through DFT calculations. Two different mechanistic scenarios were explored, suggesting that two catalytic cycles operate simultaneously depending on the concentration of the alkyl radical. Full article
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20 pages, 4217 KiB  
Article
Synthesis of Bis(amino acids) Containing the Styryl-cyclobutane Core by Photosensitized [2+2]-Cross-cycloaddition of Allylidene-5(4H)-oxazolones
by Sonia Sierra, David Dalmau, Juan V. Alegre-Requena, Alexandra Pop, Cristian Silvestru, Maria Luisa Marín, Francisco Boscá and Esteban P. Urriolabeitia
Int. J. Mol. Sci. 2023, 24(8), 7583; https://doi.org/10.3390/ijms24087583 - 20 Apr 2023
Cited by 1 | Viewed by 1207
Abstract
The irradiation of 2-aryl-4-(E-3′-aryl-allylidene)-5(4H)-oxazolones 1 with blue light (456 nm) in the presence of [Ru(bpy)3](BF4)2 (bpy = 2,2′-bipyridine, 5% mol) gives the unstable cyclobutane-bis(oxazolones) 2 by [2+2]-photocycloaddition of two oxazolones 1. Each oxazolone [...] Read more.
The irradiation of 2-aryl-4-(E-3′-aryl-allylidene)-5(4H)-oxazolones 1 with blue light (456 nm) in the presence of [Ru(bpy)3](BF4)2 (bpy = 2,2′-bipyridine, 5% mol) gives the unstable cyclobutane-bis(oxazolones) 2 by [2+2]-photocycloaddition of two oxazolones 1. Each oxazolone contributes to the formation of 2 with a different C=C bond, one of them reacting through the exocyclic C=C bond, while the other does so through the styryl group. Treatment of unstable cyclobutanes 2 with NaOMe/MeOH produces the oxazolone ring opening reaction, affording stable styryl-cyclobutane bis(amino acids) 3. The reaction starts with formation of the T1 excited state of the photosensitizer 3[Ru*(bpy)3]2+, which reacts with S0 of oxazolones 1 through energy transfer to give the oxazolone T1 state 3(oxa*)-1, which is the reactive species and was characterized by transient absorption spectroscopy. Measurement of the half-life of 3(oxa*)-1 for 1a, 1b and 1d shows large values for 1a and 1b (10–12 μs), while that of 1d is shorter (726 ns). Density functional theory (DFT) modeling displays strong structural differences in the T1 states of the three oxazolones. Moreover, study of the spin density of T1 state 3(oxa*)-1 provides clues to understanding the different reactivity of 4-allylidene-oxazolones described here with respect to the previously reported 4-arylidene-oxazolones. Full article
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13 pages, 2204 KiB  
Article
Dimeric Product of Peroxy Radical Self-Reaction Probed with VUV Photoionization Mass Spectrometry and Theoretical Calculations: The Case of C2H5OOC2H5
by Hao Yue, Cuihong Zhang, Xiaoxiao Lin, Zuoying Wen, Weijun Zhang, Sabah Mostafa, Pei-Ling Luo, Zihao Zhang, Patrick Hemberger, Christa Fittschen and Xiaofeng Tang
Int. J. Mol. Sci. 2023, 24(4), 3731; https://doi.org/10.3390/ijms24043731 - 13 Feb 2023
Cited by 4 | Viewed by 1802
Abstract
Organic peroxy radicals (RO2) as key intermediates in tropospheric chemistry exert a controlling influence on the cycling of atmospheric reactive radicals and the production of secondary pollutants, such as ozone and secondary organic aerosols (SOA). Herein, we present a comprehensive study [...] Read more.
Organic peroxy radicals (RO2) as key intermediates in tropospheric chemistry exert a controlling influence on the cycling of atmospheric reactive radicals and the production of secondary pollutants, such as ozone and secondary organic aerosols (SOA). Herein, we present a comprehensive study of the self-reaction of ethyl peroxy radicals (C2H5O2) by using advanced vacuum ultraviolet (VUV) photoionization mass spectrometry in combination with theoretical calculations. A VUV discharge lamp in Hefei and synchrotron radiation at the Swiss Light Source (SLS) are employed as the photoionization light sources, combined with a microwave discharge fast flow reactor in Hefei and a laser photolysis reactor at the SLS. The dimeric product, C2H5OOC2H5, as well as other products, CH3CHO, C2H5OH and C2H5O, formed from the self-reaction of C2H5O2 are clearly observed in the photoionization mass spectra. Two kinds of kinetic experiments have been performed in Hefei by either changing the reaction time or the initial concentration of C2H5O2 radicals to confirm the origins of the products and to validate the reaction mechanisms. Based on the fitting of the kinetic data with the theoretically calculated results and the peak area ratios in the photoionization mass spectra, a branching ratio of 10 ± 5% for the pathway leading to the dimeric product C2H5OOC2H5 is measured. In addition, the adiabatic ionization energy (AIE) of C2H5OOC2H5 is determined at 8.75 ± 0.05 eV in the photoionization spectrum with the aid of Franck-Condon calculations and its structure is revealed here for the first time. The potential energy surface of the C2H5O2 self-reaction has also been theoretically calculated with a high-level of theory to understand the reaction processes in detail. This study provides a new insight into the direct measurement of the elusive dimeric product ROOR and demonstrates its non-negligible branching ratio in the self-reaction of small RO2 radicals. Full article
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