Liquids

In this work, we propose a comprehensive experimental study of the diffusion of isoniazid, one of the first-line anti-tuberculosis drugs, in combination with another drug (ethambutol dihydrochloride) and with different cyclodextrins as carrier molecules, for facilitated transport and enhanced solubility. For that, ternary mutual diffusion coefficients measured by the Taylor dispersion method (D₁₁, D₂₂, D₁₂, and D₂₁) are determined for aqueous solutions containing isoniazid and different cyclodextrins (that is, α–CD, β–CD, and γ–CD) at 298.15 K. From the significant effect of the presence of these carbohydrates on the diffusion of this drug, interactions between these components are suggested. Support for this arose from models, which shows that these effects may be due to the formation of 1:1 (CDs:isoniazid) complexes. Full article

The standard molar enthalpies of formation in the liquid phase for ethyl (E)-cinnamate and ethyl hydrocinnamate, two cinnamate derivatives with notable flavor and fragrance characteristics, were determined experimentally using combustion calorimetry in an oxygen atmosphere. To derive the gas-phase enthalpies of formation for these derivatives, their enthalpies of vaporization were measured using a high-temperature Calvet microcalorimeter and the vacuum drop microcalorimetric technique. Additionally, a computational analysis employing the G3(MP2)//B3LYP composite method was conducted to calculate the gas-phase standard enthalpies of formation at T = 298.15 K for both compounds. These findings enabled a detailed assessment and analysis of the structural and energetic effects of the vinyl and ethane moieties between the phenyl and carboxylic groups in the studied compounds. Considering the structural features of ethyl (E)-cinnamate and ethyl hydrocinnamate, a gas-phase enthalpy of hydrogenation analysis was conducted to explore their energetic profiles more thoroughly. Full article

A new method, based on quantum chemical calculations, is proposed for the thermodynamically consistent reformulation of QSPR-type Linear Free-Energy Relationship (LFER) models. This reformulation permits the extraction of valuable information on intermolecular interactions and its transfer in other LFER-type models, in acidity/basicity scales, or even in equation-of-state models. New molecular descriptors of electrostatic interactions are derived from the distribution of molecular surface charges obtained from COSMO-type quantum chemical calculations. The widely used and very successful Abraham’s Linear Solvation Energy Relationship (LSER) model is selected as the reference LSER model for the calculations in solute–solvent systems as well as in solute self-solvation. Hydrogen-bonding free energies, enthalpies, and entropies are now derived for a variety of common solutes. The capacity of the method to address the role of conformational changes in solvation quantities is discussed. The perspectives of the LSER model with the implementation of the new descriptors are also discussed. Full article

Solute descriptors derived from experimental solubility data for oxybenzone dissolved in 21 different organic solvents indicate that the hydrogen atom on the hydroxyl functional group forms an intramolecular hydrogen bond with the lone electron pair on the oxygen atom of the neighboring >C=O functional group. Group contribution methods developed for estimating the Abraham model solute descriptors from the molecule’s Canonical SMILES code significantly over-estimate the Abraham model’s hydrogen bond acidity solute descriptor of oxybenzone. An informed user-modified Canonical SMILES code is proposed to identify which hydrogen atoms are involved in intramolecular H-bond formation. The identified hydrogen atom(s) can be used to define a new functional/fragment group and numerical group contribution value. Full article

Many ionic liquids, including alkylimidazolium salts, form a nanoheterogeneous structure with polar and apolar domains in their liquid phase. Using molecular dynamics simulations, the influence of the structure of the cations of a series of aprotic ([C_nC₁Im][TFSI], [C_nC_nIm][TFSI]) and protic ([HC_nIm][TFSI]) alkylimidazolium bistrilimides on the domain structure of their liquid phase was studied. The characteristic sizes of domains and the extent of domain segregation in different liquids have been compared. It has been shown that the latter, but not the former, is a key factor determining the magnitude of the Gibbs free energy of cavity formation in nanostructured ionic liquids, which in turn governs their solvation properties. Full article

In this work, an approach to the calculation of hydrogen bonding enthalpies is proposed. It employs the correlation proposed by M.H. Abraham, establishing the connection between the equilibrium constant (K_HB) and acidity (${\alpha }_2^{\mathrm{H}}$) and basicity (${\beta }_2^{\mathrm{H}}$) parameters: log K_HB = 7.354 · ${\alpha }_2^H$ · ${\beta }_2^H$ − 1.099. Hydrogen bonding enthalpy (Δ_HBH) is found using the compensation relationship with Gibbs energy (Δ_HBG): Δ_HBG = 0.66 · Δ_HBH + 2.5 kJ·mol⁻¹. This relationship enables the calculation of the enthalpy, Gibbs energy and entropy of hydrogen bonding. The validity of this approach was tested against 122 experimental hydrogen bonding enthalpies values available from the literature. The root mean square deviation and average deviation equaled 1.6 kJ·mol⁻¹ and 0.5 kJ·mol⁻¹, respectively. Full article

We review the statistical mechanic foundations of the fundamental structure-making/breaking functions, leading to the rigorous description of the solute-induced perturbation of the solvent environment for the understanding of the solvation process of any species regardless of the type and nature of the solute–solvent interactions. Then, we highlight how these functions are linked to unambiguous thermodynamic responses resulting from changes in state conditions, composition, and solute–solvent intermolecular interaction asymmetries. Finally, we identify and illustrate the pitfalls behind the use of surrogate approaches to structure-making/breaking markers, including those based on Jones–Dole’s B-coefficient and Hepler’s isobaric-thermal expansivity, while highlighting their ambiguities and lack of consistency and the sources of misinterpretations. Full article

New experimental vapour pressures and vaporisation enthalpies of the ionic liquids [2,4-dimethyl-1,2,4-triazolium][NTf₂], [2-methyl-4-ethyl-1,2,4-triazolium][NTf₂], and [2-ethyl-4-methyl-1,2,4-triazolium][NTf₂] were measured using the Langmuir method in combination with the quartz crystal microbalance. New experimental vapour pressures and vaporisation enthalpies of the molecular liquids 1H-1,2,4-triazole, 1-methyl-1,2,4-triazole, 1-ethyl-1,2,4-triazole, and 1H-1,2,3-triazole were measured using the transpiration method. Structure–property relationships between molecular and ionic liquids were studied. These results will facilitate chemical engineering calculations of processes involving ILs. Full article

The geometries and vibrational frequencies of various configurations of XO₄^m−(H₂O)_n, X = Fe, Ru, Os, m = 0; X = Mn, Tc, Re, m = 1; X = Cr, Mo, W, m = 2; and X = Nb, Ta, m = 3; n = 0–6 are calculated at various levels up to MP2/6-31+G* and B3LYP/6-31+G*. These properties are studied as a function of increasing cluster size. The experimental and theoretical bond distances and vibrational spectra are compared where available, and predictions are made where they are not. Full article

A dense artificial neural network, ESE-ΔH-DNN, with two hidden layers for calculating both solvation free energies ΔG°_solv and enthalpies ΔH°_solv for neutral solutes in organic solvents is proposed. The input features are generalized-Born-type monatomic and pair electrostatic terms, the molecular volume, and atomic surface areas of the solute, as well as five easily available properties of the solvent. ESE-ΔH-DNN is quite accurate for ΔG°_solv, with an RMSE (root mean square error) below 0.6 kcal/mol and an MAE (mean absolute error) well below 0.4 kcal/mol. It performs particularly well for alkane, aromatic, ester, and ketone solvents. ESE-ΔH-DNN also exhibits a fairly good accuracy for ΔH°_solv prediction, with an RMSE below 1 kcal/mol and an MAE of about 0.6 kcal/mol. Full article

This study explores the application of fine-tuned large language models for predicting physicochemical properties, specifically focusing on Abraham model solute descriptors (E, S, A, B, V) and modified solvent parameters (e₀, s₀, a₀, b₀, v₀). By leveraging ChemLLaMA, a specialized version of the LLaMA model for cheminformatics tasks, we developed the AbraLlama-Solvent and AbraLlama-Solute models using curated datasets of experimentally derived solute descriptors and solvent parameters. Our findings demonstrate that AbraLlama-Solvent and AbraLlama-Solute predict modified solvent parameters and solute descriptors with high accuracy, comparable to existing methods. The AbraLlama-Solvent model shows varying prediction accuracy across different solvents, influenced by their position within the chemical space, while the AbraLlama-Solute model consistently predicts solute descriptors with high accuracy. Both models are available as applications on Hugging Face, facilitating easy predictions from SMILES strings. This research highlights the potential of LLMs in chemistry applications, offering practical tools for solvent comparison and expanding the applicability of Abraham solvation equations to a broader range of organic solvents. Full article

Deep eutectic solvents (DESs) have emerged as viable alternatives to toxic organic solvents. The most intriguing aspect of these solvents is perhaps the widely varying physicochemical properties emerging from the changes in the constituents that form DESs along with their composition. Based on the constituents, a DES can be hydrophilic/polar or hydrophobic/non-polar, rendering a vastly varying spectrum of polarity a possibility. DESs formed by mixing urea (U) with hydrated lanthanide salts, lanthanum nitrate hexahydrate (La : U), cerium nitrate hexahydrate (Ce : U), and gadolinium nitrate hexahydrate (Gd : U), respectively, exhibit very high polarity as manifested via the probe-reported empirical parameters of dipolarity/polarizability (π*). The highest π* of 1.70 exhibited by the DES (Gd : U) in a 1 : 2 molar ratio is unprecedented. The π* ranges from 1.50 to 1.70 for these DESs, which is almost the highest reported for any solvent system. The π* decreases with an increasing amount of urea in the DES; however, the anomalous trends in H-bond donating acidity (α) and H-bond accepting basicity (β) appear to be due to the hydrated water of the lanthanide salt. The emission band maxima of the fluorescence probe of the “effective” dielectric constant (ε_eff) of the solubilizing media, pyrene-1-carboxaldehyde (PyCHO), in salt-rich DESs reflect higher cybotactic region dipolarity than that offered by water. Probe Nile red aggregates readily in these DESs to form non-fluorescent H-aggregates, which is a characteristic of highly polar solvents. The behavior of probe pyranine also corroborates these outcomes as the (lanthanide salt : urea) DES system supports the formation of the deprotonated form of the probe in the excited state. The (lanthanide salt : urea) DES system offers solubilizing media of exceptionally high polarity, which is bound to expand their application potential. Full article

Years of massive applications of high-throughput atomistic modeling tools such as molecular docking and end-point free energy calculations in the drug industry and academic exploration have made them indispensable parts of hierarchical screening. While the similarities between host–guest and protein–ligand complexes lead to the direct extension of techniques for protein–ligand screening to host–guest systems, the practical performance of these hit identification tools remains unclear in host-–-guest binding. Recent reports on specific host–guest complexes suggest that the experience on the accuracy ladder accumulated from protein–ligand cases could be invalid in host–guest complexes, which makes it an urgent need to perform a systematic benchmark to secure solid numerical supports and guidance of practical setups. Concerning molecular docking, there still lacks a comprehensive benchmark considering popular docking programs. As for end-point reranking, quantitative and rigorous free energy estimation via end-point formulism requires establishing statistically meaningful measurements of uncertainties due to finite sampling, which is neglected or underestimated by a significant portion in almost all main-stream applications. Further, a face-to-face comparison between different screening tools is required for the design of a hierarchical workflow. To fill the above-mentioned critical gaps, in this work, using a dataset containing tens of host–guest complexes involving basket-like macromolecular hosts from the octa acid family, we extensively benchmark seven academic docking protocols and perform post-docking end-point rescoring with twenty protocols. The resulting comprehensive benchmark provides conclusive pictures of the practical value of docking and end-point screening in OA host–guest binding. Full article

Mole fraction of solubilities are reported for the: o-acetoacetanisidide, anthracene, benzoin, 4-tert-butylbenzoic acid, 3-chlorobenzoic acid, 3-chlorobenzoic acid, 2-chloro-5-nitrobenzoic acid, 4-chloro-3-nitrobenzoic acid, 3,4-dichlorobenzoic acid, 2,3-dimethoxybenzoic acid, 3,4-dimethoxybenzoic acid, 3,5-dimethoxybenzoic acid, 3,5-dinitrobenzoic acid, diphenyl sulfone, 2-ethylanthraquinone, 2-methoxybenzoic acid, 4-methoxybenzoic acid, 2-methylbenzoic acid, 3-methylbenzoic acid, 2-methyl-3-nitrobenzoic acid, 3-methyl-4-nitrobenzoic acid, 4-methyl-3-nitrobenzoic acid, 2-naphthoxyacetic acid, 3-nitrobenzoic acid, 4-nitrobenzoic acid, salicylamide, thioxanthene-9-one, 3,4,5-trimethoxybenzoic acid, and xanthene dissolved in isobutyl acetate at 298.15 K. The results of our experimental measurements, combined with the published literature data, were used to obtain Abraham model equations for isobutyl acetate. The mathematical correlations presented in the current study describe the observed molar solubility ratios of the solutes dissolved in isobutyl acetate to within an overall standard deviation of 0.12 log units or less. Full article

Vaporization enthalpies and vapor pressures of 5α-androstane and 5α-cholestane are reported using correlation gas chromatography (CGC). The results for 5α-cholestane are compared to both estimated and experimental values reported previously for 5α-cholestane. The results are generally in agreement with the literature within the reported uncertainties. A simple method for reducing the amount of curvature in logarithm plots of vapor pressures as a function of K/T when using n-alkanes as standards in CGC experiments is also reported. This may prove useful in evaluating vapor pressures of rigid hydrocarbons at high temperatures. Full article

Published equilibrium mole fraction solubilities of phenothiazine in ethanol, propylene glycol and water as mono-solvents at several temperatures were investigated to find standard apparent thermodynamic quantities of dissolution mixing and solvation based on the van’t Hoff and Gibbs equations. Further, by processing the reported mole fraction solubility values of phenothiazine in some aqueous cosolvent mixtures at T/K = 298.2, the inverse Kirkwood–Buff integrals treatment demonstrated preferential hydration of phenothiazine in water-rich mixtures and preferential solvation of this agent by cosolvents in mixtures of 0.24 < x₁ < 1.00 in the {ethanol (1) + water (2)} mixed system and mixtures of 0.18 < x₁ < 1.00 in the {propylene glycol (1) + water (2)} mixed system. Full article

In this study, the friction factor of a turbulent pipe flow for dried rice malt extract solutions was experimentally reduced to that of a Newtonian fluid. The friction factor was measured for four types of solutions at different culture times and concentrations. The results indicate that the experimental data points of the test solutions diverged from the maximum drag reduction asymptote at and above Re√f ≅ 200~250 and aligned parallel to those of Newtonian fluids. This drag reduction phenomenon differed from that observed in artificial high-molecular-weight polymer solutions, called Type A drag reduction, in which the drag reduction level is dependent on the Reynolds number in the intermediate region. This is classified as a Type B drag reduction phenomenon in biopolymer solutions and fine solid particle suspensions. The order of drag reduction corresponded to approximately 5–50 ppm xanthan gum solutions, as reported previously. Furthermore, the velocity profile in a turbulent pipe flow was predicted using a semi-theoretical equation in which the friction factors were determined using the difference between the experimental results of the tested solutions and Newtonian fluids. The results indicate considerable thickening of the viscous sublayer in the turbulent pipe flow of the test solutions compared with that of Newtonian fluids. Full article

Swallowing disorders, or dysphagia, can lead to bolus aspiration in the airway, causing serious adverse health effects. Current clinical interventions for dysphagia are mainly empirical and often based on symptoms rather than etiology, of which a thorough understanding is still lacking. However, it is challenging to study the swallowing process that involves sequential structural motions and is inaccessible to standard visualization instruments. This study proposed an in vitro method to visualize swallowing hydrodynamics and identify the fundamental mechanisms underlying overflow aspirations. An anatomically accurate pharynx–epiglottis model was developed from patient-specific CT images of 623 µm isotropic resolution. A compliant half-pharynx cast was prepared to incorporate dynamic structures and visualize the flow dynamics in the mid-sagittal plane. Three locations of frequent overflow aspiration were identified: the epiglottis base, cuneiform tubular recesses, and the interarytenoid notch. Water had a consistently higher aspiration risk than a 1% w/v methylcellulose (MC) solution. The contracting–relaxing pharynx and flapping epiglottis spread the liquid film, causing a delayed esophageal entry and increased vallecular residual, which was more pronounced with the MC solution. Dispensing the liquid too slowly resulted in water aspiration, whereas this was not observed with the MC solution. An incomplete epiglottis inversion, such as horizontal or down-tilt 45°, aggravated the aspiration risks of water. This study suggests that it is practical to use anatomically accurate respiratory–digestive models to study the swallowing process by incorporating varying physiological details. Full article

Density, viscosity, refractive index, and ultrasonic velocity were measured for the pure materials anisole, methanol, and toluene, and for the binary mixtures: methanol—anisole and methanol—toluene. Excess molar volume V^E, isobaric thermal compressibility α, excess Gibbs activation energy for fluid flow ΔG^E*, and excess isentropic compressibility κ_S^E were calculated from the measured quantities. For both binary mixtures V^E and κ_S^E were <0 while Δn > 0 and ΔG^E* > 0 over the entire mole fraction composition range. Anisole mixtures exhibited more negative values for V^E and κ_S^E while more positive values were displayed for Δn and ΔG^E* compared to toluene mixtures. For Δη, negative values were observed at low alcohol concentrations but positive values at high alcohol concentrations for both systems. Full article