Search Results (1,543)

Selenium is an essential trace element for human health, but it mainly exists in an inorganic form that cannot be directly absorbed by the body. Brewer’s yeast efficiently converts inorganic selenium into bioavailable organic selenium, making selenium-enriched yeast highly significant for human health research. Selenomethionine (SeM) is an important indicator for evaluating the quality of selenium-enriched yeast. Brewer’s yeast was selected as the experimental subject, and the digestion of this yeast (Brewer’s yeast) was simulated using an in vitro biomimetic gastrointestinal reactor to evaluate the effects of selenium-enriched yeast with various SeM levels on the gut flora of a healthy population. The experimental design comprised normal yeast (control group, OR), yeast containing moderate SeM levels (selenium-enriched group, SE), yeast containing high SeM levels (high-selenium group, MU), and a commercially available group comprising selenium-enriched yeast tablets (MA). The MU group exhibited a significantly higher concentration of short-chain fatty acids than the OR and MA groups during 48 h of fermentation, with significant differences observed (p < 0.05). Sequencing results revealed that the MU group showed significantly increased relative abundances of Bacteroidetes and Actinobacteria, while exhibiting a decreased ratio of Firmicutes to Bacteroidetes, which may simultaneously affect multiple metabolic pathways in vivo. These findings support the theory that selenium-enriched yeast with a high SeM has a more positive effect on human health compared with traditional yeast and offer new ideas for the development and application of selenium-enriched yeast. Full article

Ligia feed on seashore algae and remove organic debris from the coastal zone, thereby playing an important role in the intertidal ecosystem. Nevertheless, the specific roles of distinct gut segments in the gut transit remain unclear. We collected and identified Ligia exotica specimens in the coast of Aoshanwei, Qingdao, Shandong Province, and analyzed their foreguts and hindguts for 16S rRNA, metagenomics, metabolomics, and proteomics. The concentrations of common metabolites, NO₃⁻-N and NH₄⁺-N, and the contents of C and N were measured. The gut transit decreased the abundances of the dominant phyla Cyanobacteria but increased Proteobacteria, Firmicutes, and Actinobacteria, and Planctomycetes and Bacteroidetes remained relatively constant. The foregut gut microbiota is involved in the carbohydrates and amino acids metabolism, as well as the decomposition of polysaccharides. The hindgut gut microbiota performs a variety of functions, including carbohydrate and amino acid metabolism, fermentation, cell motility, intracellular transport, secretion, and vesicular translocation, and the decomposition of polysaccharides, disaccharides, and oligosaccharides. The results of omics analyses and molecular experiments demonstrated that the metabolic processes involving amino acids and carbohydrates are more active in the foregut, whereas the fermentation, absorption, and assimilation processes are more active in the hindgut. Taken together, the differences in microbial community structure determine the functional specialization of different gut segments, i.e., the foregut appears to be the primary site for digesting food, while the hindgut further processes and absorbs nutrients and then excretes them. Full article

Intercropping of trees and classical crops has been proposed as a practice to help adapt to climate change and protect soil against erosion. However, the effects of intercropping on soil biology are not sufficiently quantified. Therefore, the aim of this study was to evaluate microbiological changes in the soil resulting from the intercropping of Paulownia and buckwheat. A field experiment, involving an intercropping and control no-tree variant, was conducted from 2019 to 2022 with a plot size of 30 m². Buckwheat rhizosphere soil samples were collected twice in both 2021 and 2022 in order to evaluate the effects of intercropping on a range of parameters describing soil microbiome status: abundance of microorganisms, bacterial and fungal community structure (using Illumina MiSeq sequencing), dehydrogenases (DHA) activity, and total glomalin-related soil proteins (T-GRSP). In addition, the colonisation of buckwheat roots by fungi, yield, and biometric traits of the plant were determined. Next-generation sequencing showed that Actinobacteria, Proteobacteria, and Acidobacteria were dominant in the microbiome of every variant of the experiment, regardless of the crop. In contrast, the mycobiome was dominated by fungi classified as Ascomycota and Mortierellomycota. This observation corresponded to an increase in buckwheat yield in intercropped plots. Biometric traits, namely buckwheat yield and total kernel weight per plant, showed higher values when buckwheat was intercropped with Paulownia compared to the control. DHA activity was stimulated by intercropping at the first sampling date, whereas glomalin concentration and abundance of microorganisms were not dependent on the cropping systems tested. This study shows that tree-based intercropping (TBI) systems promote a more diverse soil microbial community and function than conventional agriculture. Our results also suggest that TBI positively impacts buckwheat biometric traits, supporting its implementation in rural landscapes. The yield under intercropping cultivation amounted to 0.65 t ha⁻¹, while in control sites it was 0.53 t ha⁻¹. The total abundance of bacteria under intercropping cultivation was higher compared to monoculture in 2021 at the first term of sampling (4.3 × 10⁴) and in 2022 in the second term of soil sampling (4.6 × 10⁴). Full article

Soil microorganisms play an essential role in vegetation succession, nutrient cycling, and ecosystem restoration. This study investigates the responses of soil microbial communities to ecological transitions from forest to wetland in the Lesser Khingan Mountains, including mixed forest, conifer forest, wetland edge, and natural wetland. The results indicated that natural wetland soils were weakly acidic and contained significantly higher organic matter, total nitrogen, and available phosphorus compared to other soils. Soil bulk density increased with depth. Actinobacteria, Acidobacteriota, and Proteobacteria dominated in mixed forest, wetland edge, and natural wetland soils, respectively, showing minimal variation between depths. Principal component analysis and non-metric multidimensional scaling demonstrated distinct bacterial communities between natural wetlands and wetland edges. Redundancy analysis revealed that soil bacterial communities differed significantly between 15 cm and 30 cm layers, influenced by potassium, bulk density, organic carbon, phosphorus, and nitrogen. Proteobacteria and Bacteroidota abundances correlated positively with nutrients, while Acidobacteriota and Verrucomicrobiota correlated negatively with available potassium. Chemotrophic and aerobic bacteria dominated in forest soils, whereas fermentation-related and anaerobic bacteria were prevalent in wetland soils. The study highlights how ecological transitions and soil properties shape soil microbial communities and their functions. Full article

Early weaning in intensive pig production induces stress, compromising gastrointestinal health. Poor fat digestion results from the piglets’ underdeveloped digestive system. Dietary emulsifiers can enhance fat utilization, and glyceryl polyethylene glycol ricinoleate (GPGR) has been shown to improve pig performance. This study evaluated GPGR’s effects on intestinal health in weaned piglets in a commercial production farm. A total of 380 just weaned (21 days old) piglets were divided in two groups of 190 animals each (in four replicates) that received either a basal diet (control) or a basal diet + 350 g/ton GPGR pharmaceutical formulation as top dress. Blood samples were collected at pre-established days, and intestinal sampling occurred 15 days post-weaning. Plasma cortisol, citrulline, intestinal morphology, mucus quality, enzymatic activity, volatile fatty acids (VFAs), and cecal microbiota were analyzed. GPGR did not alter plasma cortisol but increased citrullinemia (P: 0.024), suggesting greater enterocyte functional mass. GPGR piglets showed improved intestinal morphology (greater villus height, villus height:crypt depth ratio, and intestinal absorption area, p < 0.05) and higher enzymatic maltase activity (p ≤ 0.014). VFAs, bacterial adherence to mucus, and goblet cell counts were unaffected. Dietary GPGR increased Firmicutes and Actinobacteria (P: 0.014 and P: 0.045, respectively) while reducing Proteobacteria (p < 0.001). In conclusion, dietary GPGR promotes intestinal health in weaned piglets by improving epithelial structure, digestive function, and microbiota balance, representing a promising strategy to support piglets in overcoming the early nursery phase. Full article

Microbiome studies aimed at combating the citrus greening devastation caused by Liberibacter asiaticus abound. However, the role of farming practices, such as the massive use of herbicides, pesticides, and inorganic fertilizers on specific taxa and plant population immunity remains an important inquiry. To test our hypothesis that agricultural practices in managed Citrus groves induce root microbiome dysbiosis, potentially rendering citrus readily susceptible to citrus greening disease (CGD), we compared the CGD and root microbiome status of citrus plants in a rare > 130-year-old grove (no anthropogenic influence) to those of managed Valencia groves (symptomatic and asymptomatic). Citrus greening disease was detected by qPCR using the HLBa/HLBs/HLBp primer/probe combination, while root microbiome community structure was determined using 16S rDNA amplicon sequencing. The prevalence of CGD among citrus growing in the undisturbed, healthy soils was zero (Ct values > 36), while symptomatic and asymptomatic Valencia from managed groves was 100% positive (Ct < 34). Known beneficial plant symbionts (Actinomycetales, Bradyrhizobium, Verrucomicrobia, etc.) from Phylum Actinobacteria and Proteobacteria were depleted in the rhizosphere of the managed sites. This dysbiotic shift was characterized by enrichment with Acidobacterium, Nitrospira, and Sphingomonas spp. In highly infected Valencia oranges, beneficial taxa of the Alphaproteobacteria declined significantly (from 20–25% to 10–15%), while Bacillus sp. (a Firmicutes) was enriched 13-fold. Simpson and Shannon diversity indices were similar for all plant microbiomes except the heavily infected Valencia, which exhibited low diversity (p < 0.05), indicating that diversity indices alone are not reliable measures of soil health or rhizobiome homeostasis. Large reservoirs of known and novel putative beneficial rhizosphere microbes in undisturbed sites supported zero CGD, despite proximity to the managed sites where diverse non-beneficial taxa coincided with high disease rates. Supplementing the use of agrochemicals with carefully designed microbial products for plant disease control and sustainable soil health deserves acute attention. Full article

The microbiome of the shrimp’s digestive tract shows differences between healthy and acute hepatopancreatic necrosis disease (AHPND)-affected shrimp. The present study aimed to evaluate the impact of probiotic consumption on the microbial community in experimentally AHPND-infected shrimp. Effective probiotics (EPs) Vibrio alginolyticus (Va32A), V. campbellii (VcHA), and Bacillus pumilus (BPY100) and non-effective probiotics (NEPs) B. pumilus (Bp43, and BpY119), were employed in bioassays with Penaeus vannamei and challenged with AHPND-causing V. parahaemolyticus (Vp_AHPND). Stomach (Sto), intestine (Int), and hepatopancreas (Hep) were analyzed by metabarcoding (16S rRNA gene) to characterize the microbiome and biomarkers. Hep-VcHA showed the highest alpha diversity (Shannon index = 5.88; 166 ASVs), whereas the lowest was for Hep-Bp43 (2.33; 7 ASVs). Proteobacteria, Actinobacteria, Bacteroidetes, and Saccharibacteria were the most abundant phyla. The relative abundance of Vibrio sp. was the highest in the Hep and Int of Bp43, BPY119 and the positive control, followed by Rhodobacteraceae in the EP group. Principle coordinate analysis (PCoA) showed a cluster grouped negative (Sto and Hep) control with almost all organs in the EP group causing 28.79% of the variation. The core microbiome of EP was mainly represented by Rhodobacteraceae, Caldilineaceae, Celeribacter indicus, Illumatobacter, Microbacterium, Ruegeria atlantica, Saccharibacteria sp., Shimia biformata, and Thalassobius mediterraneus, whose relative abundance was enriched by probiotics, which may explain their protective roles against Vp_AHPND, whereas the low survival in the NEP group was associated with a higher diversity of Vibrio spp. Our results present an ecosystem-friendly alternative based on beneficial microorganisms to prevent and control AHPND and probably other bacterial diseases in shrimp farming. Full article

Salinity is one of the most important abiotic stress factors affecting wheat production. Salt in the soil is a major environmental stressor that can affect the bacterial community in the rhizosphere of wheat. The bacteria in the plant’s rhizosphere promote growth and stress tolerance, which vary by variety and location. Nevertheless, the soil harbors some of the most diverse microbial communities, while the rhizosphere selectively recruits according to the needs of plants in a complex harmonic regulation. The microbial composition and diversity under normal and saline conditions were assessed by comparing the rhizosphere of wheat with soil using 16S rRNA gene amplicon sequencing, highlighting the number of operational taxonomic units (OTUs). Taxonomic analyzes showed that the bacterial community was predominantly and characteristically composed of the phyla Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, Verrucomicrobia, and Fibrobacteres, representing the usual microbial profile for the rhizosphere of wheat. Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions. This was observed even with unchanged soil type and genotype. These patterns occurred despite the same soil type and genotype, with salinity being the only variable. The collective action of these bacterial phyla in the rhizosphere not only improves nutrient availability but also induces systemic resistance in the plants. This synergistic effect improves plant resistance to salt stress and supports the development of salt-tolerant wheat varieties. These microbial signatures could improve our understanding of plant–microbe interactions and support the development of microbiome-based solutions for salt stress. Full article

Carbon (C), nitrogen (N), and phosphorus (P) are key soil nutrients whose synergistic interactions regulate ecosystem nutrient cycling, yet the functional gene-level coordination and driving factors of these cycles remain poorly understood. This study addresses this gap by investigating the dynamic changes in C, N, and P cycling functional genes and their microbial and environmental drivers across Robinia pseudoacacia plantations of different restoration stages (10, 20, 30, and 40 years) on the Loess Plateau. We analyzed soil physicochemical properties and conducted metagenomic sequencing, redundancy analysis (RDA), and Partial Least Squares Structural Equation Modeling (PLS-SEM). Results showed that P-cycling functional genes, particularly pqqC and spoT, exhibited the highest network centrality, indicating their dominant role in regulating nutrient dynamics. Compared with farmland, STC, SOC, SAP, pH, and SWC significantly changed (p < 0.05) with restoration age, directly shaping key microbial groups such as Proteobacteria, Acidobacteria, Actinobacteria, and Chloroflexi. These microbial shifts were strongly correlated with the synergistic changes in C, N, and P functional gene abundance (p < 0.01). The findings highlight the central role of phosphorus-solubilizing genes in linking C, N, and P cycles and emphasize the microbial community responses to soil environmental changes as a key driver of nutrient cycling during ecological restoration. This study provides novel insights into microbial functional gene interactions and their ecological significance in soil nutrient dynamics, offering theoretical support for improving restoration strategies on the Loess Plateau. Full article

Rhizosphere microbiome exerts a significant role in plant health, influencing nutrient availability, disease resistance, and overall plant growth. Establishing a robust and efficient nodulation process is essential for optimal nitrogen fixation in legumes like soybeans. Different soybean genotypes exhibit variations in their rhizosphere microbiome, potentially impacting nitrogen fixation through nodulation. However, a detailed understanding of how specific soybean genotypes influence rhizosphere microbial communities and nodulation patterns remains limited. Our study aims to investigate the relationship between rhizosphere microbial abundance and plant growth in four soybean genotypes. We evaluated plant growth parameters, including biomass, leaf area, and stomatal conductance, and identified significant genotypic differences in nodulation. Specifically, genotypes PI 458505 and PI 603490 exhibited high levels of nodulation, while PI 605839A and PI 548400 displayed low nodulation. 16S rRNA gene amplicon sequencing revealed diverse bacterial communities in the rhizosphere, with Proteobacteria as the dominant phylum. High-nodulation genotypes harbored more diverse microbial communities enriched with Actinobacteria and Acidobacteriota, while low-nodulation genotypes showed higher abundances of Firmicutes and Planctomycetota. Alpha and beta diversity analyses confirmed distinct microbial community structures between high- and low-nodulation groups. Our findings suggest that the rhizosphere microbiome significantly influences soybean growth and nodulation, highlighting the potential for genotype-driven strategies to enhance plant-microbe interactions and improve soybean productivity. Full article

The initial variations in soil bacteria at the very beginning of reclamation still remains unclear. This study investigates the impact on bacterial communities of eight different treatments, including uncultivated land, unfertilized cultivation, chemical fertilizer, chemical fertilizer + bacterial fertilizer, manure, manure + bacterial fertilizer, manure + chemical fertilizer, and manure + chemical fertilizer + bacterial fertilizer, during the short-term reclamation of coal-mining soils. The results showed that total nitrogen, available phosphorus, soil organic carbon, microbial biomass carbon, and alkaline phosphatase activity were significantly increased in all fertilization treatments compared to uncultivated land (p < 0.05). All fertilization treatments other than chemical fertilizer harbored significantly higher activities of urease, catalase, and invertase than unfertilized cultivation (p < 0.05). The bacterial communities structures in manure-amended treatments significantly differed in uncultivated land and unfertilized cultivation and were phylotypically shifted from oligotrophic to Actinobacteria-dominant copiotrophic traits, accompanied with phenotypic succession of the enriching characteristics of Gram-positive, biofilms formation, and stress tolerance. The co-occurrence network in manure-amended treatments harbored a simple co-occurrence network, indicating more productive soils than in no-manure treatments. Manure amendment, total nitrogen, microbial biomass carbon, invertase, catalase, and soil moisture were the key driving factors. Our study underscores the bacterial initialization characteristics promoted by manure at the very beginning of coal-mining reclamation. Full article

Amidst escalating global water scarcity and the urgent need for sustainable agricultural practices, the exploration of efficient and eco-friendly agricultural aids has become paramount. This field experiment investigated the effects of foliar γ-polyglutamic acid (γ-PGA) application on summer maize under two irrigation levels (0 m³·ha⁻¹ and 900 m³·ha⁻¹ at the bell-mouth stage) and three γ-PGA spraying treatments. The results demonstrated that both irrigation and γ-PGA spraying significantly influenced maize yield and various growth parameters, with notable interaction effects. Compared to the control, single and double applications of γ-PGA increased summer maize yield by 33.3% and 37.0%, respectively, while enhancing dry matter accumulation and nutrient uptake. Foliar γ-PGA application also altered the rhizosphere microbial community composition, increasing the abundances of Proteobacteria and Actinobacteria, as well as beneficial bacteria such as Arthrobacter, Sphingomonas, Streptomyces, and Altererythrobacter. Additionally, it significantly increased the population of Dung Saprotroph fungi, which are beneficial for crop growth. These findings suggest that foliar γ-PGA application can promote summer maize growth and holds significant potential for agricultural applications. Full article

The Integrated Multi-Trophic Aquaculture (IMTA) model is an eco-friendly aquaculture system that enhances water purification through ecological niche utilization. A study employing 16S rRNA sequencing analyzed microbial communities in aquaculture water at initial, middle, and final stages. Results indicated that physicochemical parameters were lower at the final stage. The removal efficiencies of Total Nitrogen (TN) and Total Phosphorus (TP) reached 79.10% and 63.64%, respectively. The Simpson and Shannon indices revealed that microbial diversity was significantly higher in the final stage compared to the initial and middle stages (p < 0.05). Dominant bacterial phyla included Actinobacteria, Proteobacteria, and Bacteroidetes, while dominant genera included Candidatus_Aquiluna, NS3a_marine_group, and NS5_marine_group. Functional prediction results demonstrated that metabolic pathways such as amino acid metabolism, biosynthesis of other amino acids, and energy metabolism were upregulated in the final stage compared to the initial stage. Correlation analysis of environmental factors suggested that TN and TP significantly influenced the microbial community structure. Key microorganisms such as Candidatus_Aquiluna, Marinomonas, and Cobetia played crucial roles in carbon fixation, nitrogen reduction, and phosphorus removal. In summary, the IMTA model effectively purifies water, with microbial communities contributing to the stability of the aquatic environment. Full article

The distribution and assembly mechanisms of microorganisms in Antarctic lakes and glaciers remain poorly understood, despite their ecological significance. This study investigates the bacterial diversity and community composition in glacier borehole meltwater samples from the eastern Broknes Peninsula of the Larsemann Hills and adjacent lake water samples in East Antarctica using high—throughput 16S rRNA gene sequencing. The results show that bacterial diversity in glacier borehole meltwater increased with depth, but remained lower than in lake water. Significant compositional differences were observed between lake and glacier borehole bacterial communities, with higher relative abundances of Actinobacteria, Bacteroidia, Cyanobacteriia, and Verrucomicrobiae in glacier borehole water samples, while Alphaproteobacteria, Gammaproteobacteria, OLB14 (phylum Chloroflexi), Acidimicrobiia, and Thermoleophilia were more abundant in lake samples. These differences were attributed to distinct community assembly mechanisms: stochastic processes (ecological drift and dispersal limitation) dominated in lakes, while both stochastic (ecological drift and homogeneous dispersal) and deterministic (homogeneous selection) processes played key roles in glacier boreholes. This study enhances our understanding of bacterial community assembly and distribution patterns in Antarctic glacier ecosystems, providing insights into microbial biodiversity and biogeochemical cycling in these extreme environments. Full article

The objective of this study was to optimise the potato dextrose agar (PDA) culture medium in terms of its potential for use in the growth of actinobacteria. The strain used in this study was a species of actinobacteria previously identified as Streptosporangium sp. (P1C3), characterised by slow growth (20 days of incubation), low aerial mycelium production, and no pigment production. To determine the optimal formulation, the Streptosporangium sp. (P1C3) strain was tested for incubation time and aerial mycelium growth across 27 formulations based on the PDA culture medium. A central composite rotational design (CCRD) experimental methodology was employed, where glucose concentration (g/L), yeast extract concentration (g/L), pH, and temperature were tested. Among the tested formulations, 01, 05, 09, and 13 showed a reduction in incubation time and complete aerial mycelium growth, which was linearly influenced by the four tested variables. Response surface analysis indicated that the optimal values for promoting aerial mycelium growth in the shortest incubation time were 10 g/L glucose concentration, from 1 g/L to 3 g/L yeast extract concentration, pH levels between 5.7 and 7.2, and temperatures between 24 °C and 32 °C. The optimisation of the PDA medium proved effective in improving the isolation of actinobacteria and enhancing the production of metabolites with potential antimicrobial activity. Full article