Search Results (17)

Climate change is jeopardizing global food security, with at least 713 million people facing hunger. To face this challenge, legumes as common beans could offer a nature-based solution, sourcing nutrients and dietary fiber, especially for rural communities in Latin America and Africa. However, since common beans are generally heat and drought susceptible, it is imperative to speed up their molecular introgressive adaptive breeding so that they can be cultivated in regions affected by extreme weather. Therefore, this study aimed to couple an advanced panel of common bean (Phaseolus vulgaris L.) × tolerant Tepary bean (P. acutifolius A. Gray) interspecific lines with Bayesian regression algorithms to forecast adaptation to the humid and dry sub-regions at the Caribbean coast of Colombia, where the common bean typically exhibits maladaptation to extreme heat waves. A total of 87 advanced lines with hybrid ancestries were successfully bred, surpassing the interspecific incompatibilities. This hybrid panel was genotyped by sequencing (GBS), leading to the discovery of 15,645 single-nucleotide polymorphism (SNP) markers. Three yield components (yield per plant, and number of seeds and pods) and two biomass variables (vegetative and seed biomass) were recorded for each genotype and inputted in several Bayesian regression models to identify the top genotypes with the best genetic breeding values across three localities on the Colombian coast. We comparatively analyzed several regression approaches, and the model with the best performance for all traits and localities was BayesC. Also, we compared the utilization of all markers and only those determined as associated by a priori genome-wide association studies (GWAS) models. Better prediction ability with the complete SNP set was indicative of missing heritability as part of GWAS reconstructions. Furthermore, optimal SNP sets per trait and locality were determined as per the top 500 most explicative markers according to their β regression effects. These 500 SNPs, on average, overlapped in 5.24% across localities, which reinforced the locality-dependent nature of polygenic adaptation. Finally, we retrieved the genomic estimated breeding values (GEBVs) and selected the top 10 genotypes for each trait and locality as part of a recommendation scheme targeting narrow adaption in the Caribbean. After validation in field conditions and for screening stability, candidate genotypes and SNPs may be used in further introgressive breeding cycles for adaptation. Full article

Lippia alba (Mill.) N.E.Br. ex Britton and P. Wilson is a native plant of Colombia, widespread throughout Central and South America, used for thousands of years by pre-Columbian populations, who already knew the many beneficial properties of this species (e.g., antifungal, antibacterial, antiviral and anti-inflammatory activities). The essential oil of L. alba is rich in phytochemicals with antioxidant activity that could be very useful both for pharmacology and biotechnology application, such as the protection of horticultural crops sensitive to salinity. To enhance salt tolerance, seed-priming treatment with the essential oil of L. alba was performed. We evaluated the effect of this biostimulant on the response to salt stress in a sensitive bean species, Phaseolus acutifolius L. (cv Blue Tepary), native to Mexico, and used by pre-Columbians as well as nowadays. Bean seeds were primed in a solution of 0.5 mL/L of essential oil of L. alba, germinated and after 2 weeks of acclimation, the seedlings were subjected to salt stress, by watering with 40 mM and 80 mM NaCl solutions. Four weeks later, many biochemical parameters were evaluated in order to test the effects of the treatments on plant fitness. Primed seeds showed an increase in salt tolerance during germination, as well as primed plants revealing a higher water uptake, increased chlorophylls, proline content and salt tolerance index. The treatments also improved the Ca²⁺ concentration in the shoots of stressed primed plants, more quickly activating enzymatic responses to salinity—in particular superoxide dismutase, polyphenol oxidase, catalase, peroxidase and ascorbate peroxidase—compared to unprimed stressed plants. In conclusion, L. alba was found to be a strong elicitor of responses against osmotic and oxidative stress, as induced by salinity, suggesting the possibility of its future utilization in agriculture. Full article

Background: rTBL-1, a recombinant lectin from Phaseolus acutifolius, exhibit proapoptotic activity on colon cancer cells and inhibitory properties on colon tumorigenesis in vivo. Apoptosis has been associated with a phospho-EGFR/phospho-p38/phospho-p53 mechanistic axis. Immunogenicity data have been observed in treated animals, but its possible involvement in the antitumor response remained unexplored. Objective: We investigated whether the cytotoxic activity of rTBL-1 depends on EGFR and its capacity to produce antitumor responses on syngeneic colon cancer in mice, with and without T cells, in order to explore its possible involvement in the process. Results:rTBL-1 exhibited cytotoxic effects in a concentration-dependent manner in both EGFR⁺ (MC-38) and EGFR⁻ (CT-26) colon cancer cells with LC₅₀ values of 23.50 and 30.01 µg/mL, respectively (p = 0.063). Apoptotic effects were slower and longer-lasting in MC-38 than in CT-26 cells. Significant increases in caspase-3 proteolytic activation and PARP1 cleavage were detected in both cell types, despite PARP1 rheostasis in CT-26 cells. Intralesional treatment with rTBL-1 inhibited the growth of established tumors in immunocompetent BALB/c mice in 27.81% (p = 0.0008) with a benefit in survival (p = 0.022), but not in immunodeficient BALB/c nude mice. Conclusions:rTBL-1 induces apoptosis in colon cancer cells by EGFR independent mechanisms, although its presence could be related to deeper responses. Unresponsiveness in nude mice indicated that rTBL-1 antitumor effect is the synergistic result of apoptosis induction and T cell-mediated cytotoxicity in the tumor. Future studies will focus on the immunogenic effects triggered by the antitumor activity of rTBL-1 in colon cancer. Full article

Lippia alba (Mill.) N.E.Br. ex Britton and P. Wilson is used in folk medicine of Central and South America for its biological activities: i.e., antifungal, antibacterial, antiviral, and anti-inflammatory. Based on ethnopharmacological information and the increasing interest in this species, this work aimed to test a possible wide use of its essential oil (EO) in pharmaceutical and horticultural applications. Therefore, we focused the attention on the antioxidant activity of the oil as a possible tool to overcome the oxidative stress in both applications. For this purpose, we have chosen three aggressive breast cancer cell lines and two horticultural species (Solanum lycopersicum L. and Phaseolus acutifolius L.) that are very sensitive to salt stress. We determined the antioxidant activity of L. alba EO through the quantification of phenols and flavonoids. Regarding tomato and bean plants under salt stress, L. alba EO was used for the first time as a seed priming agent to enhance plant salt tolerance. In this case, the seed treatment enhanced the content of phenolic compounds, reduced power and scavenger activity, and decreased membrane lipid peroxidation, thus mitigating the oxidative stress induced by salt. While in breast cancer cells the EO treatment showed different responses according to the cell lines, i.e., in SUM149 and MDA-MB-231 the EO decreased proliferation and increased antioxidant activity and lipid peroxidation, showing high cytotoxic effects associated with the release of lactate dehydrogenase, vice versa no effect was observed in MDA-MB-468. Such antioxidant activity opens a new perspective about this essential oil as a possible tool to counteract proliferation in some cancer cell lines and in horticulture as a seed priming agent to protect from oxidative damage in crops sensitive to salinity. Full article

Altitude plays a crucial role in shaping the diversity and distribution of species in forest landscapes in mountainous regions. However, existing studies often lack comprehensive analysis of the intricate relationships among environmental factors, disturbances, and species diversity. This study aims to address this gap by thoroughly analyzing major species’ diversity, distribution, and regeneration status, along with their influencing factors, across different altitudinal gradients (1850 to 2350 m). Field surveys were conducted to examine the major species in different vegetation layers of the secondary Picea forest in Guandi Mountain. The key findings from the study include the following: (1) the study area recorded a total of nine species of adult trees, belonging to eight genera in five families, fourteen species of shrubs from eight genera in five families, and fifty-two herb species representing forty-eight genera in twenty-six families. Dominant species varied across layers, with Picea asperata Mast. and Larix principis-rupprechtii Mayr. dominating the arborous layer, Lonicera ferdinandii Franch. and Cotoneaster acutifolius Turcz. in the shrub layer, and Poa pratensis L. and Duchesnea indica (Andrews.) Focke in the herb layer. (2) Altitude significantly influenced species diversity, with the most pronounced effects observed in the shrub and herb layers. (3) Tree species regeneration varied with altitude, with Picea asperata exhibiting the highest regeneration performance, particularly in the high-altitude zone (2250–2350 m). Regeneration parameters were significantly correlated with species diversity indices in both tree and shrub layers. (4) Redundancy analysis revealed that, apart from altitude, cutting (p = 0.015) influenced the species diversity of the tree layer, while annual precipitation (p = 0.006) and temperature (p = 0.01) determined the diversity of the shrub layer. Grazing (p = 0.042) was identified as a determining factor for species diversity in the herb layer. Overall, these findings provide valuable insights into the sustainable management of forest ecosystems in the study area and offer practical guidance for forest management in similar mountainous landscapes worldwide. Full article

Knowledge is limited about the level of bioactive compounds and antioxidant activity of seeds from bred lines of common beans developed from interspecific crosses using four different Phaseolus species (P. vulgaris L., P. coccineus L., P. acutifolius A. Gray. Gray., and P. dumosus). In this study, differences in the nutritional quality of seeds among 112 bean genotypes were evaluated by measuring the levels of phenolic compounds, pigments, antioxidant activity, and sugars. The bean genotypes were grown under high temperatures and acid soil conditions in the Amazon region of Colombia. Five typology groups of bean genotypes were identified based on the level of bioactive compounds and their functional capacity: (1) highly bioactive and functional (HBF); (2) moderately bioactive and functional (MBF); (3) moderate antioxidant content with pigment influence (MACP); (4) moderately antinutritional with limited antioxidant potential (MALAP); and (5) antinutritional, low bioactive, and functional (ALBF). We developed a nutritional quality index (NQI) with values ranging from 0 to 1 based on the nutritional and anti-nutritional balance of each genotype and the higher values of the NQI of a genotype indicating greater nutritional quality. We found three interspecific bred lines (SER 212, SER 213, and RRA 81), with NQI values higher than 0.8. These three lines belong to the typology group of HBF. The superior nutritional quality of these three interspecific bred lines is attributed to a greater level of bioactive compounds and antioxidant capacity. These three bred lines may serve as useful parents to develop nutritionally superior and stress-resilient beans from bean breeding programs. Further research is needed to explore the role of testa color in improving the nutritional quality of seeds of common bean genotypes grown under different climatic conditions. Full article

Assessing interspecific adaptive genetic variation across environmental gradients offers insight into the scale of habitat-dependent heritable heterotic effects, which may ultimately enable pre-breeding for abiotic stress tolerance and novel climates. However, environmentally dependent allelic effects are often bypassed by intra-specific single-locality genome-wide associations studies (GWAS). Therefore, in order to bridge this gap, this study aimed at coupling an advanced panel of drought/heat susceptible common bean (Phaseolus vulgaris L.) × tolerant tepary bean (P. acutifolius A. Gray) interspecific lines with last-generation multi-environment GWAS algorithms to identify novel sources of heat and drought tolerance to the humid and dry subregions of the Caribbean coast of Colombia, where the common bean typically exhibits maladaptation to extreme weather. A total of 87 advanced lines with interspecific ancestries were genotyped by sequencing (GBS), leading to the discovery of 15,645 single-nucleotide polymorphism (SNP) markers. Five yield traits were recorded for each genotype and inputted in modern GWAS algorithms (i.e., FarmCPU and BLINK) to identify the putative associated loci across four localities in coastal Colombia. Best-fit models revealed 47 significant quantitative trait nucleotides (QTNs) distributed in all 11 common bean chromosomes. A total of 90 flanking candidate genes were identified using 1-kb genomic windows centered in each associated SNP marker. Pathway-enriched analyses were done using the mapped output of the GWAS for each yield trait. Some genes were directly linked to the drought tolerance response; morphological, physiological, and metabolic regulation; signal transduction; and fatty acid and phospholipid metabolism. We conclude that habitat-dependent interspecific polygenic effects are likely sufficient to boost common bean adaptation to the severe climate in coastal Colombia via introgression breeding. Environmental-dependent polygenic adaptation may be due to contrasting levels of selection and the deleterious load across localities. This work offers putative associated loci for marker-assisted and genomic selection targeting the common bean’s neo-tropical lowland adaptation to drought and heat. Full article

Traits related to heat stress in bean species (Phaseolus spp.) have been insufficiently explored to date, yet studies of these traits are needed given that heat stress is predicted to become more frequent and severe in many parts of the world because of climate change. In order to detect agro-morphological and physiological traits related to heat stress and selection for resistance to heat stress, a total of 196 bean genotypes including eight genotypes of tepary bean (P. acutifolius L.), five genotypes of scarlet runner bean (P. coccineus A. Gray), two genotypes of year bean (P. dumosus Macfady), five genotypes of lima bean (P. lunatus L.), and 176 genotypes of common bean (P. vulgaris L.) were evaluated in 2019 and 2020 under moderate (field) and extreme heat stress (greenhouse) conditions. Although most genotypes of P. acutifolius, P. lunatus, and P. coccineus were found to be more resistant to heat stress than most genotypes of common bean, some genotypes of common bean were shown to perform as well as P. acutifolius, P. lunatus, and P. coccineus. Biomass among agronomical traits had the highest significant direct effects on the resistance to heat stress score. The maximum quantum efficiency of PSII and SPAD values among physiological traits showed significant direct effects on the resistance to heat stress score. Biomass, leaflet size, the SPAD value and maximum quantum efficiency of PSII can be considered as heat stress-related traits, and, P. acutifolius, P. lunatus, P. coccineus, and some genotypes of P. vulgaris can be considered for exploitation in a heat stress tolerance breeding program. Full article

Previous works showed that a Tepary bean lectin fraction (TBLF) induced apoptosis on colon cancer cells and inhibited early colonic tumorigenesis. One Tepary bean (TB) lectin was expressed in Pichia pastoris (rTBL-1), exhibiting similarities to one native lectin, where its molecular structure and in silico recognition of cancer-type N-glycoconjugates were confirmed. This work aimed to determine whether rTBL-1 retained its bioactive properties and if its apoptotic effect was related to EGFR pathways by studying its cytotoxic effect on colon cancer cells. Similar apoptotic effects of rTBL-1 with respect to TBLF were observed for cleaved PARP-1 and caspase 3, and cell cycle G0/G1 arrest and decreased S phase were observed for both treatments. Apoptosis induction on SW-480 cells was confirmed by testing HA2X, p53 phosphorylation, nuclear fragmentation, and apoptotic bodies. rTBL-1 increased EGFR phosphorylation but also its degradation by the lysosomal route. Phospho-p38 increased in a concentration- and time-dependent manner, matching apoptotic markers, and STAT1 showed activation after rTBL-1 treatment. The results show that part of the rTBL-1 mechanism of action is related to p38 MAPK signaling. Future work will focus further on the target molecules of this recombinant lectin against colon cancer. Full article

Common bean (Phaseolus vulgaris L.) is sensitive to different types of abiotic stresses (drought, high temperature, low soil fertility, and acid soil), and this may limit its adaptation and consequently to its yield under stress. Because of this, a sister species, tepary bean (Phaseolus acutifolius A. Gray), has recently gained attention in breeding for improved abiotic stress tolerance in common bean. In this study, we evaluated the adaptation of 302 accessions of tepary bean (Phaseolus acutifolius A. Gray) and its wild relatives (grouped in four types of tepary bean genetic resource: cultivated, acutifolius regressive, acutifolius wild, tenuifolius wild) when grown under high temperature and acid soil conditions with aluminum toxicity in the Amazon region of Colombia. Our objective was to determine differences among four types of tepary bean genetic resource in their morpho-phenological, agronomic, and physiological responses to combined high temperature and acid soil stress conditions. We found that cultivated P. acutifolius var acutifolius presented a greater number of pods per plant, as well as larger seeds and a greater number of seeds per pod. Some traits, such as root biomass, days to flowering and physiological maturity, specific leaf area, and stomatal density, showed significant differences between types of tepary bean genetic resource, probably contributing to difference in adaptation to combined stress conditions of high temperature and acid soil conditions. The photochemical quenching (qP) was higher in cultivated P. acutifolius var. acutifolius, while energy dissipation by non-photochemical quenching (NPQ) in the form of heat and the coefficient of non-photochemical dissipation (qN) were higher in acutifolius regressive and tenuifolius wild accessions. We have identified 6 accessions of cultivated and 19 accessions of tenuifolius wild that exhibited grain yields above 1800 kg ha⁻¹. These accessions could be suitable to use as parents to improve dry seed production of tepary bean under combined stress conditions of high temperature and acid soil. Full article

Heat and drought are major stresses that significantly reduce seed yield of the common bean (Phaseolus vulgaris L.). In turn, this affects the profitability of the crop in climatic-vulnerable tropical arid regions, which happen to be the poorest and in most need of legume proteins. Therefore, it is imperative to broaden the sources of heat and drought resistance in the common bean by examining closely related species from warmer and drier environments (i.e., Tepary bean, P. acutifolius A. Gray), while harnessing such variation, typically polygenic, throughout advanced interspecific crossing schemes. As part of this study, interspecific congruity backcrosses for high temperature and drought tolerance conditions were characterized across four localities in coastal Colombia. Genotypes with high values of CO₂ assimilation (>24 µmol CO₂ m⁻² s⁻¹), promising yield scores (>19 g/plant), and high seed mineral content (Fe > 100 mg/kg) were identified at the warmest locality, Motilonia. At the driest locality, Caribia, one intercrossed genotype (i.e., 85) and the P. acutifolius G40001 control exhibited sufficient yield for commercial production (17.76 g/plant and 12.76 g/plant, respectively). Meanwhile, at southernmost Turipaná and Carmen de Bolívar localities, two clusters of genotypes exhibited high mean yield scores with 33.31 g/plant and 17.89 g/plant, respectively, and one genotype had an increased Fe content (109.7 mg/kg). Overall, a multi-environment AMMI analysis revealed that genotypes 13, 27, 82, and 84 were environmentally stable with higher yield scores compared to the Tepary control G40001. Ultimately, this study allows us to conclude that advanced common bean × Tepary bean interspecific congruity backcrosses are capable of pyramiding sufficient polygenic tolerance responses for the extreme weather conditions of coastal Colombia, which are likely to worsen due to climate change. Furthermore, some particular recombination events (i.e., genotype 68) show that there may be potential to couple breeding for heat and drought tolerance with Fe mineral biofortification, despite a prevalent trade-off, as a way to fight malnutrition of marginalized communities in tropical regions. Full article

Some of the major impacts of climate change are expected in regions where drought stress is already an issue. Grain legumes are generally drought susceptible. However, tepary bean and its wild relatives within Phaseolus acutifolius or P. parvifolius are from arid areas between Mexico and the United States. Therefore, we hypothesize that these bean accessions have diversity signals indicative of adaptation to drought at key candidate genes such as: Asr2, Dreb2B, and ERECTA. By sequencing alleles of these genes and comparing to estimates of drought tolerance indices from climate data for the collection site of geo-referenced, tepary bean accessions, we determined the genotype x environmental association (GEA) of each gene. Diversity analysis found that cultivated and wild P. acutifolius were intermingled with var. tenuifolius and P. parvifolius, signifying that allele diversity was ample in the wild and cultivated clade over a broad sense (sensu lato) evaluation. Genes Dreb2B and ERECTA harbored signatures of directional selection, represented by six SNPs correlated with the environmental drought indices. This suggests that wild tepary bean is a reservoir of novel alleles at genes for drought tolerance, as expected for a species that originated in arid environments. Our study corroborated that candidate gene approach was effective for marker validation across a broad genetic base of wild tepary accessions. Full article

Beans (Phaseolus spp.) are one of the most important legumes for their nutritional value and health benefits in many world regions. In addition to Phaseolus vulgaris, there are four additional species that are cultivated in many regions of the world and are a source of food for human consumption: P. lunatus, P. coccineus, P. polyanthus, and P. acutifolius. In this work, phenolic compounds, antioxidant activity, and anti-nutritional compounds of 18 bean accessions, corresponding to four different species of the genus Phaseolus, were analyzed. In addition, their physical characteristics, proximate composition, and amino acid content were determined in order to compare their phytochemical composition and nutritional value. The species closest to each other in terms of essential amino acid content were P. polyanthus with P. vulgaris and P. lunatus with P. coccineus. Furthermore, there was a strong positive correlation between antioxidant activity and flavonoids, anthocyanins, and lectins with all the accessions collected. Significant differences in the content of phenolic compounds were found among the bean species studied. Therefore, in addition to P. vulgaris, other species such as P. coccineus and P. lunatus have high biological and antioxidant potential that could be beneficial to human health when consumed as nutraceutical foods. Full article

Lectins are bioactive proteins with the ability to recognize cell membrane carbohydrates in a specific way. Diverse plant lectins have shown diagnostic and therapeutic potential against cancer, and their cytotoxicity against transformed cells is mediated through the induction of apoptosis. Previous works have determined the cytotoxic activity of a Tepary bean (Phaseolus acutifolius) lectin fraction (TBLF) and its anti-tumorigenic effect on colon cancer. In this work, lectins from the TBLF were additionally purified by ionic-exchange chromatography. Two peaks with agglutination activity were obtained: one of them was named TBL-IE2 and showed a single protein band in two-dimensional electrophoresis; this one was thus selected for coupling to quantum dot (QD) nanoparticles by microfluidics (TBL-IE2-QD). The microfluidic method led to low sample usage, and resulted in homogeneous complexes, whose visualization was achieved using multiphoton and transmission electron microscopy. The average particle size (380 nm) and the average zeta potential (−18.51 mV) were determined. The cytotoxicity of the TBL-IE2 and TBL-IE2-QD was assayed on HT-29 colon cancer cells, showing no differences between them (p ≤ 0.05), where the LC₅₀ values were 1.0 × 10⁻³ and 1.7 × 10⁻³ mg/mL, respectively. The microfluidic technique allowed control of the coupling between the QD and the protein, substantially improving the labelling process, providing a rapid and efficient method that enabled the traceability of lectins. Future studies will focus on the potential use of the QD-labelled lectin to recognize tumor tissues. Full article

A Tepary bean lectin fraction (TBLF) has been studied because it exhibits differential cytotoxic and anticancer effects on colon cancer. The present work focuses on the evaluation of the apoptotic mechanism of action on colon cancer cells. Initially, lethal concentrations (LC₅₀) were obtained for the three studied cell lines (HT-29, RKO and SW-480). HT-29 showed the highest LC₅₀, 10 and 100 times higher than that of RKO and SW-480 cells, respectively. Apoptosis was evaluated by flow cytometry, where HT-29 cells showed the highest levels of early and total apoptosis, caspases activity was confirmed and necrosis was discarded. The effect on cell cycle arrest was shown in the G0/G1 phase. Specific apoptosis-related gene expression was determined, where an increase in p53 and a decrease in Bcl-2 were observed. Expression of p53 gene showed the maximum level at 8 h with an important decrease at 12 and 24 h, also the phosphorylated p53(ser46) increased at 8 h. Our results show that TBLF induces apoptosis in colon cancer cells by p-p53(ser46) involvement. Further studies will focus on studying the specific signal transduction pathway. Full article