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Keywords = U.S. mini-core collection

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13 pages, 15917 KB  
Article
Alternative SEM-BEX Imaging of Rock Mini-Cores (Carbonate and Siliciclastic): Manual and Semi-Automated Acquisition
by Jim Buckman, Zaid Jangda, Helen Lewis and Kamaljit Singh
Minerals 2025, 15(4), 421; https://doi.org/10.3390/min15040421 - 17 Apr 2025
Viewed by 555
Abstract
An understanding of the textures (grain size, grain shape, porosity, etc.), composition (mineralogy), and distribution of constituent components of geological materials such as carbonate and siliciclastic sedimentary rocks is essential in their classification, interpretation, and significance in terms of their geomechanical strength and [...] Read more.
An understanding of the textures (grain size, grain shape, porosity, etc.), composition (mineralogy), and distribution of constituent components of geological materials such as carbonate and siliciclastic sedimentary rocks is essential in their classification, interpretation, and significance in terms of their geomechanical strength and liquid/gas storage potential. In terms of scanning electron microscopy (SEM), this is limited to relatively flat areas of selected rough surfaces, or the analysis of polished thin sections. Here, we illustrate a new technique that can image large areas of the external surface of mini-cores (approximately 10 mm or smaller in diameter) drilled from carbonate and siliciclastic rock samples. The technique utilises a specially developed horizontal rotation stage within an SEM and allows the collection of high-resolution images that can be reconstructed into realistic surface representations of the mini-core surfaces. Elemental data (representative of mineralogy) can also be added using a combined backscattered electron and X-ray (BEX) detector. Currently, these reconstructions can be used as a useful tool for the analysis of both carbonate and siliciclastic geological materials. Further work may allow such reconstructions to aid in the improvement of resolution in micro-CT scans and the direct identification of mineral phases within such scans. Full article
(This article belongs to the Section Clays and Engineered Mineral Materials)
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12 pages, 1988 KB  
Article
Changes in Core Temperature of Cyan-Shank Partridge Chickens Exposed to Continuously Increased Ambient Temperature at Different Relative Humidity Levels
by Chen Wang, Ketian Chen, Haocong Xu, Le Liu, Longshen Liu, Chunmei Li and Yansen Li
Animals 2025, 15(6), 820; https://doi.org/10.3390/ani15060820 - 13 Mar 2025
Viewed by 670
Abstract
(1) Background: This study aimed to investigate the changes in core temperature of Cyan-shank partridge chickens with continuously increased ambient temperature at different relative humidity (RH) levels. (2) Methods: Thirty birds were selected at the age of 35 days and randomly divided and [...] Read more.
(1) Background: This study aimed to investigate the changes in core temperature of Cyan-shank partridge chickens with continuously increased ambient temperature at different relative humidity (RH) levels. (2) Methods: Thirty birds were selected at the age of 35 days and randomly divided and housed in three artificial climate chambers. Each chamber was set at one of three different RH levels (50%, 65%, and 80%), and the ambient temperature was increased by 1.0 °C per 0.5 h from 24.0 to 34.0 °C. The core temperature was tested at 1.0 h intervals, and the ambient temperature in the chambers was recorded using mini temperature data loggers. Data were collected continuously for three days at the ages of 35, 42, and 49 days. The broken-line model (BLM) was used to calculate the inflection point temperature (IPT) and basal core temperature (constant). (3) Results: Both RH and age had no significant influence on the IPT. With increasing ambient temperature, the average IPT values of birds measured at the three ages were 26.52, 27.02, and 26.71 °C at the RH levels of 50%, 65%, and 80%, respectively. A significant downward trend in basal core temperature was observed as the birds aged from 35 to 42 days (p < 0.05). (4) Conclusions: the core temperature of the chicken gradually decreased as the age increased. During the hot summer months, it is better to keep the ambient temperature less than 26.5 °C to avoid the excessive increase in core temperature in Cyan-shank partridge chicken at the ages from 35 to 49 days. Full article
(This article belongs to the Special Issue Sustainable Strategies for Intensive Livestock Production Systems)
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13 pages, 611 KB  
Review
Permanent Maxillary Lateral Incisors’ Agenesis Managed by Mini-Screw Implant-Supported Pontics: A Scoping Review
by Elena Caramaschi, Elisabetta Lalli, Valentino Garau, Alessio Verdecchia and Enrico Spinas
Dent. J. 2025, 13(3), 96; https://doi.org/10.3390/dj13030096 - 24 Feb 2025
Cited by 1 | Viewed by 1232
Abstract
Background/Objectives: The Agenesis of maxillary lateral incisors occurs with a variable prevalence in different ethnic groups, and there is a need for a temporary replacement until maturity has been reached in patients for whom the replacement solution has been chosen. This study aims [...] Read more.
Background/Objectives: The Agenesis of maxillary lateral incisors occurs with a variable prevalence in different ethnic groups, and there is a need for a temporary replacement until maturity has been reached in patients for whom the replacement solution has been chosen. This study aims to analyze the scientific evidence available to date concerning the use of mini-screw implant (MSI)-supported pontics for the transitional management of permanent maxillary lateral incisors’ agenesis in developmental age subjects. Methods: Electronic research was conducted using four databases: PubMed, Clarivate Analytics/Web of Science Core Collection, Scopus, and the Wiley/Cochrane Library. Six studies were included in the final review. Data were extracted based on the first and second author, year of publication, study design, sample characteristics, mini-screw implant (MSI) characteristics, MSI insertion and loading protocol, characteristics of the prosthetic component, and outcomes during the follow-up time. Results: Clinical outcomes were proven positive in all studies. In only one study did MSIs show mobility and consequent failure after one month. Discoloration of the prosthetic part proved to be the main complication. Conclusions: The comparison with conventional removable prostheses and fixed dental prostheses revealed that MSI-supported pontics are a viable alternative and a promising temporary solution until the end of growth. Further studies to standardize protocols and assess long-term outcomes are needed. Full article
(This article belongs to the Special Issue Dentistry in the 21st Century: Challenges and Opportunities)
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15 pages, 1189 KB  
Article
Cognitive Impairment in Cerebral Amyloid Angiopathy: A Single-Center Prospective Cohort Study
by Aikaterini Theodorou, Athanasia Athanasaki, Konstantinos Melanis, Ioanna Pachi, Angeliki Sterpi, Eleftheria Koropouli, Eleni Bakola, Maria Chondrogianni, Maria-Ioanna Stefanou, Efthimios Vasilopoulos, Anastasios Kouzoupis, Georgios P. Paraskevas, Georgios Tsivgoulis and Elias Tzavellas
J. Clin. Med. 2024, 13(23), 7427; https://doi.org/10.3390/jcm13237427 - 6 Dec 2024
Cited by 5 | Viewed by 1497
Abstract
Background/Objectives: Cognitive impairment represents a core and prodromal clinical feature of cerebral amyloid angiopathy (CAA). We sought to assess specific cognitive domains which are mainly affected among patients with CAA and to investigate probable associations with neuroimaging markers and Cerebrospinal Fluid (CSF) biomarkers. [...] Read more.
Background/Objectives: Cognitive impairment represents a core and prodromal clinical feature of cerebral amyloid angiopathy (CAA). We sought to assess specific cognitive domains which are mainly affected among patients with CAA and to investigate probable associations with neuroimaging markers and Cerebrospinal Fluid (CSF) biomarkers. Methods: Thirty-five patients fulfilling the Boston Criteria v1.5 or v2.0 for the diagnosis of probable/possible CAA were enrolled in this prospective cohort study. Brain Magnetic Resonance Imaging and CSF biomarker data were collected. Every eligible participant underwent a comprehensive neurocognitive assessment. Spearman’s rank correlation tests were used to identify possible relationships between the Addenbrooke’s Cognitive Examination—Revised (ACE-R) sub-scores and other neurocognitive test scores and the CSF biomarker and neuroimaging parameters among CAA patients. Moreover, linear regression analyses were used to investigate the effects of CSF biomarkers on the ACE-R total score and Mini-Mental State Examination (MMSE) score, based on the outcomes of univariate analyses. Results: Cognitive impairment was detected in 80% of patients, and 60% had a coexistent Alzheimer’s disease (AD) pathology based on CSF biomarker profiles. Notable correlations were identified between increased levels of total tau (t-tau) and phosphorylated tau (p-tau) and diminished performance in terms of overall cognitive function, especially memory. In contrast, neuroimaging indicators, including lobar cerebral microbleeds and superficial siderosis, had no significant associations with cognitive scores. Among the CAA patients, those without AD had superior neurocognitive test performance, with significant differences observed in their ACE-R total scores and memory sub-scores. Conclusions: The significance of tauopathy in cognitive impairment associated with CAA may be greater than previously imagined, underscoring the necessity for additional exploration of the non-hemorrhagic facets of the disease and new neuroimaging markers. Full article
(This article belongs to the Section Clinical Neurology)
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14 pages, 1960 KB  
Article
Genome-Wide Association Analysis Identified Quantitative Trait Loci (QTLs) Underlying Drought-Related Traits in Cultivated Peanut (Arachis hypogaea L.)
by Phat Dang, Jinesh Patel, Ron Sorensen, Marshall Lamb and Charles Y. Chen
Genes 2024, 15(7), 868; https://doi.org/10.3390/genes15070868 - 2 Jul 2024
Cited by 3 | Viewed by 1704
Abstract
Drought is a destructive abiotic stress that affects all critical stages of peanut growth such as emergence, flowering, pegging, and pod filling. The development of a drought-tolerant variety is a sustainable strategy for long-term peanut production. The U.S. mini-core peanut germplasm collection was [...] Read more.
Drought is a destructive abiotic stress that affects all critical stages of peanut growth such as emergence, flowering, pegging, and pod filling. The development of a drought-tolerant variety is a sustainable strategy for long-term peanut production. The U.S. mini-core peanut germplasm collection was evaluated for drought tolerance to the middle-season drought treatment phenotyping for pod weight, pod count, relative water content (RWC), specific leaf area (SLA), leaf dry matter content (LDMC), and drought rating. A genome-wide association study (GWAS) was performed to identify minor and major QTLs. A total of 144 QTLs were identified, including 18 significant QTLs in proximity to 317 candidate genes. Ten significant QTLs on linkage groups (LGs) A03, A05, A06, A07, A08, B04, B05, B06, B09, and B10 were associated with pod weight and pod count. RWC stages 1 and 2 were correlated with pod weight, pod count, and drought rating. Six significant QTLs on LGs A04, A07, B03, and B04 were associated with RWC stages 1 and 2. Drought rating was negatively correlated with pod yield and pod count and was associated with a significant QTL on LG A06. Many QTLs identified in this research are novel for the evaluated traits, with verification that the pod weight shared a significant QTL on chromosome B06 identified in other research. Identified SNP markers and the associated candidate genes provide a resource for molecular marker development. Verification of candidate genes surrounding significant QTLs will facilitate the application of marker-assisted peanut breeding for drought tolerance. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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18 pages, 1826 KB  
Article
Phenotyping Peanut Drought Stress with Aerial Remote-Sensing and Crop Index Data
by Maria Balota, Sayantan Sarkar, Rebecca S. Bennett and Mark D. Burow
Agriculture 2024, 14(4), 565; https://doi.org/10.3390/agriculture14040565 - 2 Apr 2024
Cited by 6 | Viewed by 2453
Abstract
Peanut (Arachis hypogaea L.) plants respond to drought stress through changes in morpho-physiological and agronomic characteristics that breeders can use to improve the drought tolerance of this crop. Although agronomic traits, such as plant height, lateral growth, and yield, are easily measured, [...] Read more.
Peanut (Arachis hypogaea L.) plants respond to drought stress through changes in morpho-physiological and agronomic characteristics that breeders can use to improve the drought tolerance of this crop. Although agronomic traits, such as plant height, lateral growth, and yield, are easily measured, they may have low heritability due to environmental dependencies, including the soil type and rainfall distribution. Morpho-physiological characteristics, which may have high heritability, allow for optimal genetic gain. However, they are challenging to measure accurately at the field scale, hindering the confident selection of drought-tolerant genotypes. To this end, aerial imagery collected from unmanned aerial vehicles (UAVs) may provide confident phenotyping of drought tolerance. We selected a subset of 28 accessions from the U.S. peanut mini-core germplasm collection for in-depth evaluation under well-watered (rainfed) and water-restricted conditions in 2018 and 2019. We measured morpho-physiological and agronomic characteristics manually and estimated them from aerially collected vegetation indices. The peanut genotype and water regime significantly (p < 0.05) affected all the plant characteristics (RCC, SLA, yield, etc.). Manual and aerial measurements correlated with r values ranging from 0.02 to 0.94 (p < 0.05), but aerially estimated traits had a higher broad sense heritability (H2) than manual measurements. In particular, CO2 assimilation, stomatal conductance, and transpiration rates were efficiently estimated (R2 ranging from 0.76 to 0.86) from the vegetation indices, indicating that UAVs can be used to phenotype drought tolerance for genetic gains in peanut plants. Full article
(This article belongs to the Special Issue Precision Agriculture Technologies for Crop Management)
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11 pages, 6095 KB  
Article
Identification of Donors for Fresh Seed Dormancy and Marker Validation in a Diverse Groundnut Mini-Core Collection
by Deekshitha Bomireddy, Vinay Sharma, Ramachandran Senthil, Mangala Reddisekhar, Priya Shah, Kuldeep Singh, Devarapalli Mohan Reddy, Palagiri Sudhakar, Bommu Veera Bhaskara Reddy and Manish K. Pandey
Agronomy 2024, 14(1), 112; https://doi.org/10.3390/agronomy14010112 - 1 Jan 2024
Cited by 4 | Viewed by 2456
Abstract
Domestication and extensive selection in the development of modern, high-yielding commercial groundnut cultivars have resulted in the selection of an undesirable trait known as in situ germination, which is also referred to as the pre-harvest sprouting of seeds. This is particularly prevalent in [...] Read more.
Domestication and extensive selection in the development of modern, high-yielding commercial groundnut cultivars have resulted in the selection of an undesirable trait known as in situ germination, which is also referred to as the pre-harvest sprouting of seeds. This is particularly prevalent in regions where humid weather coincides with the harvest season. Delayed harvesting and pre-sprouting can cause production losses and increase the chances of aflatoxin contamination, thereby impeding the quality and kernel yield. Breeding early maturing groundnut cultivars with 2–3 weeks of fresh seed dormancy, particularly in Spanish-type cultivars, enhances the sustainability of agriculture. In this context, we conducted a comprehensive evaluation of a groundnut mini-core collection, a major resource for genetic diversity, for fresh seed dormancy using an in vitro germination assay for two seasons, viz., rainy 2022 and post-rainy 2022–2023 at ICRISAT (Hyderabad). To enhance the effectiveness and accuracy of traditional breeding methods via the use of markers for marker-assisted selection, we performed molecular screening of the mini-core accessions using two allele-specific markers. The GMFSD1 marker was successfully validated by effectively differentiating dormant and non-dormant genotypes. By employing phenotypic and marker data, we identified a set of accessions, viz., ICG 5827 (Virginia Runner), ICG 11457 (Virginia Runner), ICG 7000 (Virginia Bunch), and ICG 11322 (Virginia Bunch) of sub spp. hypogaea var. hypogaea and ICG 9809 (Spanish Bunch) of sub spp. fastigiata var. vulgaris that exhibited a fresh seed dormancy period ranging from 2 to 3 weeks. These identified accessions hold potential as donors in breeding programs that are designed to address the groundnut production needs in various cropping systems across different countries. The validated marker, particularly GMFSD1, demonstrated considerable potential for facilitating faster breeding of groundnut cultivars with the desired dormancy using marker-assisted selection. This research provides a foundation to expediting groundnut breeding programs and offers opportunities to mitigate pre-harvest sprouting, ultimately improving seed quality and productivity in groundnut-producing regions. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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17 pages, 3852 KB  
Article
Smart Parking Locks Based on Extended UNET-GWO-SVM Algorithm
by Jianguo Shen, Yu Xia, Hao Ding and Wen Cabrel
Sensors 2023, 23(20), 8572; https://doi.org/10.3390/s23208572 - 19 Oct 2023
Cited by 3 | Viewed by 2251
Abstract
Due to the rapid increase in private car ownership in China, most cities face the problem of insufficient parking spaces, leading to frequent occurrences of parking space conflicts. There is a wide variety of parking locks available on the market. However, most of [...] Read more.
Due to the rapid increase in private car ownership in China, most cities face the problem of insufficient parking spaces, leading to frequent occurrences of parking space conflicts. There is a wide variety of parking locks available on the market. However, most of them lack advanced intelligence and cannot cater to the growing diverse needs of people. The present study attempts to devise a smart parking lock to tackle this issue. Specifically, the smart parking lock uses a Raspberry Pi as the core controller, senses the vehicle with an ultrasonic ranging module, and collects the license plate image with a camera. In addition, algorithms for license plate recognition based on traditional image-processing methods typically require a high pixel resolution, but their recognition accuracy is often low. Therefore, we propose a new algorithm called UNET-GWO-SVM to achieve higher accuracy in embedded systems. Moreover, we developed a WeChat mini program to control the smart parking lock. Field tests were conducted on campus to evaluate the performance of the parking locks. The test results show that the corresponding effective unlocking rate is 99.0% when the recognition error is less than two license plate characters. The average time consumption is controlled at about 2 s. It can meet real-time requirements. Full article
(This article belongs to the Section Intelligent Sensors)
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19 pages, 2177 KB  
Article
Alterations in Growth Habit to Channel End-of-Season Perennial Reserves towards Increased Yield and Reduced Regrowth after Defoliation in Upland Cotton (Gossypium hirsutum L.)
by Salman Naveed, Nitant Gandhi, Grant Billings, Zachary Jones, B. Todd Campbell, Michael Jones and Sachin Rustgi
Int. J. Mol. Sci. 2023, 24(18), 14174; https://doi.org/10.3390/ijms241814174 - 16 Sep 2023
Cited by 4 | Viewed by 2632
Abstract
Cotton (Gossypium spp.) is the primary source of natural textile fiber in the U.S. and a major crop in the Southeastern U.S. Despite constant efforts to increase the cotton fiber yield, the yield gain has stagnated. Therefore, we undertook a novel approach [...] Read more.
Cotton (Gossypium spp.) is the primary source of natural textile fiber in the U.S. and a major crop in the Southeastern U.S. Despite constant efforts to increase the cotton fiber yield, the yield gain has stagnated. Therefore, we undertook a novel approach to improve the cotton fiber yield by altering its growth habit from perennial to annual. In this effort, we identified genotypes with high-expression alleles of five floral induction and meristem identity genes (FT, SOC1, FUL, LFY, and AP1) from an Upland cotton mini-core collection and crossed them in various combinations to develop cotton lines with annual growth habit, optimal flowering time, and enhanced productivity. To facilitate the characterization of genotypes with the desired combinations of stacked alleles, we identified molecular markers associated with the gene expression traits via genome-wide association analysis using a 63 K SNP Array. Over 14,500 SNPs showed polymorphism and were used for association analysis. A total of 396 markers showed associations with expression traits. Of these 396 markers, 159 were mapped to genes, 50 to untranslated regions, and 187 to random genomic regions. Biased genomic distribution of associated markers was observed where more trait-associated markers mapped to the cotton D sub-genome. Many quantitative trait loci coincided at specific genomic regions. This observation has implications as these traits could be bred together. The analysis also allowed the identification of candidate regulators of the expression patterns of these floral induction and meristem identity genes whose functions will be validated. Full article
(This article belongs to the Section Molecular Plant Sciences)
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12 pages, 2599 KB  
Article
Functional Characterization of Candidate Genes, Gohir.D05G103700 and Gohir.D12G153600, Identified through Expression QTL Analysis Using Virus-Induced Gene Silencing in Upland Cotton (Gossypium hirsutum L.)
by Salman Naveed and Sachin Rustgi
Agriculture 2023, 13(5), 1007; https://doi.org/10.3390/agriculture13051007 - 2 May 2023
Cited by 5 | Viewed by 3098
Abstract
Cotton (Gossypium spp.) is a major source of natural fiber and an important cash crop. The cotton growth habit and architecture determine its productivity and influence management strategies for commercial production. The GATA transcription factors (TFs) control various developmental processes in plants, [...] Read more.
Cotton (Gossypium spp.) is a major source of natural fiber and an important cash crop. The cotton growth habit and architecture determine its productivity and influence management strategies for commercial production. The GATA transcription factors (TFs) control various developmental processes in plants, such as flower, bract and embryo development, and petal differentiation. As stable transformation is still a bottleneck in many plant species, TRV-VIGS was used to manipulate gene expression in different plants, including Gossypium hirsutum L. In this study, we undertook the TRV-based VIGS to functionally characterize two candidate genes, Gohir.D05G103700 and Gohir.D12G153600, identified through expression QTL analysis for five floral induction and meristem identity genes using the upland cotton mini-core collection. Virus-induced silencing of the Gohir.D05G103700 gene resulted in up to a 1.4-fold reduction in the transcript level in two inoculated plants, G3 and G4, and Gohir.D12G153600 gene resulted in up to a 2.3-fold reduction in transcript level in a single inoculated plant P05 relative to the mock-treated plant. The TRV2-Gohir.D05G103700-inoculated plants G3 and G4 also exhibited loss of the supernumerary (fourth) floral bract in the squares, whereas the TRV2-Gohir.D12G153600-inoculated plants did not show any observable phenotypic change relative to the mock-treated plants. Altogether, this study suggested that TRV-VIGS can be used to characterize genes in cotton relatively rapidly, and the cotton Gohir.D05G103700 gene is a positive regulator of the indeterminate growth habit in cotton, which could be manipulated to obtain a cotton plant with architecture best suited for the cultivation area. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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33 pages, 2785 KB  
Article
Evaluation of the U.S. Peanut Germplasm Mini-Core Collection in the Virginia-Carolina Region Using Traditional and New High-Throughput Methods
by Sayantan Sarkar, Joseph Oakes, Alexandre-Brice Cazenave, Mark D. Burow, Rebecca S. Bennett, Kelly D. Chamberlin, Ning Wang, Melanie White, Paxton Payton, James Mahan, Jennifer Chagoya, Cheng-Jung Sung, David S. McCall, Wade E. Thomason and Maria Balota
Agronomy 2022, 12(8), 1945; https://doi.org/10.3390/agronomy12081945 - 18 Aug 2022
Cited by 12 | Viewed by 3317
Abstract
Peanut (Arachis hypogaea L.) is an important food crop for the U.S. and the world. The Virginia-Carolina (VC) region (Virginia, North Carolina, and South Carolina) is an important peanut-growing region of the U.S and is affected by numerous biotic and abiotic stresses. [...] Read more.
Peanut (Arachis hypogaea L.) is an important food crop for the U.S. and the world. The Virginia-Carolina (VC) region (Virginia, North Carolina, and South Carolina) is an important peanut-growing region of the U.S and is affected by numerous biotic and abiotic stresses. Identification of stress-resistant germplasm, along with improved phenotyping methods, are important steps toward developing improved cultivars. Our objective in 2017 and 2018 was to assess the U.S. mini-core collection for desirable traits, a valuable source for resistant germplasm under limited water conditions. Accessions were evaluated using traditional and high-throughput phenotyping (HTP) techniques, and the suitability of HTP methods as indirect selection tools was assessed. Traditional phenotyping methods included stand count, plant height, lateral branch growth, normalized difference vegetation index (NDVI), canopy temperature depression (CTD), leaf wilting, fungal and viral disease, thrips rating, post-digging in-shell sprouting, and pod yield. The HTP method included 48 aerial vegetation indices (VIs), which were derived using red, blue, green, and near-infrared reflectance; color space indices were collected using an octocopter drone at the same time, with traditional phenotyping. Both phenotypings were done 10 times between 4 and 16 weeks after planting. Accessions had yields comparable to high yielding checks. Correlation coefficients up to 0.8 were identified for several Vis, with yield indicating their suitability for indirect phenotyping. Broad-sense heritability (H2) was further calculated to assess the suitability of particular VIs to enable genetic gains. VIs could be used successfully as surrogates for the physiological and agronomic trait selection in peanuts. Further, this study indicates that UAV-based sensors have potential for measuring physiologic and agronomic characteristics measured for peanut breeding, variable rate input application, real time decision making, and precision agriculture applications. Full article
(This article belongs to the Special Issue Application of Image Processing in Agriculture)
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15 pages, 4140 KB  
Article
Insights into the Genomic Architecture of Seed and Pod Quality Traits in the U.S. Peanut Mini-Core Diversity Panel
by Jinesh D. Patel, Ming Li Wang, Phat Dang, Chris Butts, Marshall Lamb and Charles Y. Chen
Plants 2022, 11(7), 837; https://doi.org/10.3390/plants11070837 - 22 Mar 2022
Cited by 9 | Viewed by 2929
Abstract
Traits such as seed weight, shelling percent, percent sound mature kernels, and seed dormancy determines the quality of peanut seed. Few QTL (quantitative trait loci) studies using biparental mapping populations have identified QTL for seed dormancy and seed grade traits. Here, we report [...] Read more.
Traits such as seed weight, shelling percent, percent sound mature kernels, and seed dormancy determines the quality of peanut seed. Few QTL (quantitative trait loci) studies using biparental mapping populations have identified QTL for seed dormancy and seed grade traits. Here, we report a genome-wide association study (GWAS) to detect marker–trait associations for seed germination, dormancy, and seed grading traits in peanut. A total of 120 accessions from the U.S. peanut mini-core collection were evaluated for seed quality traits and genotyped using Axiom SNP (single nucleotide polymorphism) array for peanut. We observed significant variation in seed quality traits in different accessions and different botanical varieties. Through GWAS, we were able to identify multiple regions associated with sound mature kernels, seed weight, shelling percent, seed germination, and dormancy. Some of the genomic regions that were SNP associated with these traits aligned with previously known QTLs. For instance, QTL for seed dormancy has been reported on chromosome A05, and we also found SNP on the same chromosome associated with seed dormancy, explaining around 20% of phenotypic variation. In addition, we found novel genomic regions associated with seed grading, seed germination, and dormancy traits. SNP markers associated with seed quality and dormancy identified here can accelerate the selection process. Further, exploring the function of candidate genes identified in the vicinity of the associated marker will assist in understanding the complex genetic network that governs seed quality. Full article
(This article belongs to the Special Issue Recent Trends in Oilseed Breeding and Genetics for Agronomical Traits)
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11 pages, 1377 KB  
Proceeding Paper
Reduced-Immunogenicity Wheat and Peanut Lines for People with Foodborne Disorders
by Sachin Rustgi, Tariq Alam, Zachary Tyler Jones, Amanpreet Kaur Brar and Samneet Kashyap
Chem. Proc. 2022, 10(1), 67; https://doi.org/10.3390/IOCAG2022-12221 - 10 Feb 2022
Cited by 1 | Viewed by 2593
Abstract
Sensitivity to wheat and peanut proteins is widespread and is not restricted to geographical areas where wheat and peanuts are produced. It emphasizes the importance of these crops as a source of energy and proteins to populations globally. An uptick in the number [...] Read more.
Sensitivity to wheat and peanut proteins is widespread and is not restricted to geographical areas where wheat and peanuts are produced. It emphasizes the importance of these crops as a source of energy and proteins to populations globally. An uptick in the number of individuals diagnosed with celiac disease, an autoimmune disorder, and peanut allergy was observed in the last two decades. According to a recent estimate, ~1.4% of the world population is diagnosed with celiac disease, and ~2% of the Western population is diagnosed with peanut allergies. Unfortunately, there is no therapy available for these sensitivities other than an abstinent diet, with a need to maintain an immunogen-free environment to prevent sensitive individuals’ accidental exposure to the antigen. Given this knowledge, we focused our research on developing reduced-immunogenicity wheat and peanut genotypes that can significantly reduce the scope of severe reaction to accidental exposure to wheat/peanut proteins. Working in this direction, we undertook two approaches to develop reduced-immunogenicity wheat/peanut genotypes: (1) Use wheat/peanut germplasm screening for genotypes with reduced immunogen content, to crossbreed them to develop reduced to non-immunogenic wheat/peanut lines. (2) Use genetic engineering to silence genes encoding immunogenic proteins. To achieve the first objective, we screened wheat landraces/mutants and peanut-mini-core collections. Similarly, for gene silencing, RNA-interference constructs for the wheat DEMETER gene or guide RNAs from the wheat-gluten-gene sequences and the peanut Ara h1, Ara h2, Ara h3, and Ara h6 gene sequences were developed and assembled in single guide-RNA modules. The progress made towards the target is discussed below. Full article
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12 pages, 1150 KB  
Article
Functioning and Cognition of Portuguese Older Adults Attending in Residential Homes and Day Centers: A Comparative Study
by Manuel José Lopes, Lara Guedes de Pinho, César Fonseca, Margarida Goes, Henrique Oliveira, José Garcia-Alonso and Anabela Afonso
Int. J. Environ. Res. Public Health 2021, 18(13), 7030; https://doi.org/10.3390/ijerph18137030 - 30 Jun 2021
Cited by 22 | Viewed by 3347
Abstract
The functioning and cognition of older adults can be influenced by different care contexts. We aimed to compare the functioning profiles and cognition of institutionalized and noninstitutionalized older adults and to evaluate the effect of sociodemographic factors on the functioning and cognition. This [...] Read more.
The functioning and cognition of older adults can be influenced by different care contexts. We aimed to compare the functioning profiles and cognition of institutionalized and noninstitutionalized older adults and to evaluate the effect of sociodemographic factors on the functioning and cognition. This is a cross-sectional study that included 593 older adults. The data were collected using the Elderly Nursing Core Set and Mini Mental State Examination. Women, older adults who did not attend school and those live in Residential Homes are more likely to have a higher degree of cognitive impairment than men, those who attended school and those frequent Day Centre. The chances of an older adult with moderate or severe cognitive impairment increases with age. Older women, older adults who did not attend school, and older adults who live in Residential Homes had a higher degree of functional problem than men, those who attended school and those who frequent a Day Centre, independently to age. It is necessary to promote the health literacy of older adults throughout life. The implementation of social and health responses should allow older adults to remain in their homes, given the influence of functioning and cognition on self-care and quality of life. Full article
(This article belongs to the Special Issue Ageing and Health: A Functional and Psychological Perspective)
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10 pages, 637 KB  
Review
Noncanonical Constitutive Androstane Receptor Signaling in Gene Regulation
by Yuliya A. Pustylnyak, Lyudmila F. Gulyaeva and Vladimir O. Pustylnyak
Int. J. Mol. Sci. 2020, 21(18), 6735; https://doi.org/10.3390/ijms21186735 - 14 Sep 2020
Cited by 6 | Viewed by 4045
Abstract
The constitutive androstane receptor (CAR, NR1I3) is extremely important for the regulation of many physiological processes, especially xenobiotic (drug) metabolism and transporters. CAR differs from steroid hormone receptors in that it can be activated using structurally unrelated chemicals, both through direct ligand-binding and [...] Read more.
The constitutive androstane receptor (CAR, NR1I3) is extremely important for the regulation of many physiological processes, especially xenobiotic (drug) metabolism and transporters. CAR differs from steroid hormone receptors in that it can be activated using structurally unrelated chemicals, both through direct ligand-binding and ligand-independent (indirect) mechanisms. By binding to specific responsive elements on DNA, CAR increases the expression of its target genes encoding drug-metabolizing enzymes and transporters. Therefore, CAR is mainly characterized as a ligand-dependent or ligand-independent transcription factor, and the induction of gene expression is considered the canonical mode of CAR action. Consistent with its central role in xenobiotic metabolism, CAR signaling includes a collection of mechanisms that are employed alongside the core transcriptional machinery of the receptor. These so-called noncanonical CAR pathways allow the receptor to coordinate the regulation of many aspects of cell biology. In this mini-review, we review noncanonical CAR signaling, paying special attention to the role of CAR in energy homeostasis and cell proliferation. Full article
(This article belongs to the Section Molecular Role of Xenobiotics)
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