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39 pages, 2929 KB  
Article
A Risk-Based Analysis of Lightweight Drones: Evaluating the Harmless Threshold Through Human-Centered Safety Criteria
by Tamer Savas
Drones 2025, 9(8), 517; https://doi.org/10.3390/drones9080517 - 23 Jul 2025
Viewed by 768
Abstract
In recent years, the rapid development of lightweight Unmanned Aerial Vehicle (UAV) technology under 250 g has begun to challenge the validity of existing mass-based safety classifications. The commonly used 250 g threshold for defining “harmless” UAVs has become a subject requiring more [...] Read more.
In recent years, the rapid development of lightweight Unmanned Aerial Vehicle (UAV) technology under 250 g has begun to challenge the validity of existing mass-based safety classifications. The commonly used 250 g threshold for defining “harmless” UAVs has become a subject requiring more detailed evaluations, especially as new models with increased speed and performance enter the market. This study aims to reassess the adequacy of the current 250 g mass limit by conducting a comprehensive analysis using human-centered injury metrics, including kinetic energy, Blunt Criterion (BC), Viscous Criterion (VC), and the Abbreviated Injury Scale (AIS). Within this scope, an extensive dataset of commercial UAV models under 500 g was compiled, with a particular focus on the sub-250 g segment. For each model, KE, BC, VC, and AIS values were calculated using publicly available technical data and validated physical models. The results were compared against established injury thresholds, such as 14.9 J (AIS-3 serious injury), 25 J (“harmless” threshold), and 33.9 J (AIS-4 severe injury). Furthermore, new recommendations were developed for regulatory authorities, including energy-based classification systems and mission-specific dynamic threshold mechanisms. According to the findings of this study, most UAVs under 250 g continue to remain below the current “harmless” threshold values. However, some next-generation high-speed UAV models are approaching or exceeding critical KE levels, indicating a need to reassess existing regulatory approaches. Additionally, the strong correlation between both BC and VC metrics with AIS outcomes demonstrates that these indicators are complementary and valuable tools for assessing injury risk. In this context, the adoption of an energy-based supplementary classification and dynamic, mission-based regulatory frameworks is recommended. Full article
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22 pages, 1375 KB  
Review
Polymorphic Transformations of Pharmaceutical Materials Induced by Mechanical Milling: A Review
by Mathieu Guerain and Jean-François Willart
Pharmaceutics 2025, 17(7), 946; https://doi.org/10.3390/pharmaceutics17070946 - 21 Jul 2025
Cited by 1 | Viewed by 780
Abstract
A review of the literature on polymorphic transformations by milling on pharmaceutical materials was carried out. The available information on 18 pharmaceutical materials was compiled. In particular, when data are available, the starting and final crystalline forms, their enantiotropic or monotropic relationship, the [...] Read more.
A review of the literature on polymorphic transformations by milling on pharmaceutical materials was carried out. The available information on 18 pharmaceutical materials was compiled. In particular, when data are available, the starting and final crystalline forms, their enantiotropic or monotropic relationship, the glass transition temperature of the compound and its melting temperature, the experimental observation of a transient or partial amorphization of compounds, and the transformation kinetics make it possible to suggest a two-step transformation mechanism. First, an amorphization occurs under milling of the starting polymorphic form. Secondly, a recrystallization of the amorphous form occurs towards the final form. The observed transformation kinetics are due to the fact that the recrystallization of the amorphous material towards the final form depends on the accidental formation of a cluster of this form during milling. Moreover, the observation of the transient amorphous form depends on the relative position of the glass transition temperature of the material with respect to the milling temperature. This mechanism seems to be independent of the enantiotropic or monotropic character of the polymorphic forms involved in the transformation. Full article
(This article belongs to the Collection Feature Papers in Pharmaceutical Technology)
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12 pages, 1043 KB  
Review
Using Spectral Flow Cytometry for CAR T-Cell Clinical Trials: Game Changing Technologies Enabling Novel Therapies
by Thomas C. Beadnell, Susmita Jasti, Ruqi Wang, Bruce H. Davis and Virginia Litwin
Int. J. Mol. Sci. 2024, 25(19), 10263; https://doi.org/10.3390/ijms251910263 - 24 Sep 2024
Cited by 1 | Viewed by 4001
Abstract
Monitoring chimeric antigen redirected (CAR) T-cells post-infusion in clinical trials is a specialized application of flow cytometry. Unlike the CAR T-cell monitoring for individual patients conducted in clinical laboratories, the data generated during a clinical trial will be used not only to monitor [...] Read more.
Monitoring chimeric antigen redirected (CAR) T-cells post-infusion in clinical trials is a specialized application of flow cytometry. Unlike the CAR T-cell monitoring for individual patients conducted in clinical laboratories, the data generated during a clinical trial will be used not only to monitor the therapeutic response of a single patient, but determine the success of the therapy itself, or even of an entire class of therapeutic compounds. The data, typically acquired at multiple testing laboratories, will be compiled into a single database. The data may also be used for mathematical modeling of cellular kinetics or to identify predictive biomarkers. With the expanded context of use, a robust, standardized assay is mandatory in order to generate a valuable and reliable data set. Hence, the requirements for assay validation, traceable calibration, technology transfer, cross-instrument standardization and regulatory compliance are high. Full article
(This article belongs to the Special Issue Trends and Prospects of Flow Cytometry in Cell and Molecular Biology)
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32 pages, 9182 KB  
Article
Improved Approach for ab Initio Calculations of Rate Coefficients for Secondary Reactions in Acrylate Free-Radical Polymerization
by Fernando A. Lugo, Mariya Edeleva, Paul H. M. Van Steenberge and Maarten K. Sabbe
Polymers 2024, 16(7), 872; https://doi.org/10.3390/polym16070872 - 22 Mar 2024
Cited by 4 | Viewed by 2152
Abstract
Secondary reactions in radical polymerization pose a challenge when creating kinetic models for predicting polymer structures. Despite the high impact of these reactions in the polymer structure, their effects are difficult to isolate and measure to produce kinetic data. To this end, we [...] Read more.
Secondary reactions in radical polymerization pose a challenge when creating kinetic models for predicting polymer structures. Despite the high impact of these reactions in the polymer structure, their effects are difficult to isolate and measure to produce kinetic data. To this end, we used solvation-corrected M06-2X/6-311+G(d,p) ab initio calculations to predict a complete and consistent data set of intrinsic rate coefficients of the secondary reactions in acrylate radical polymerization, including backbiting, β-scission, radical migration, macromonomer propagation, mid-chain radical propagation, chain transfer to monomer and chain transfer to polymer. Two new approaches towards computationally predicting rate coefficients for secondary reactions are proposed: (i) explicit accounting for all possible enantiomers for reactions involving optically active centers; (ii) imposing reduced flexibility if the reaction center is in the middle of the polymer chain. The accuracy and reliability of the ab initio predictions were benchmarked against experimental data via kinetic Monte Carlo simulations under three sufficiently different experimental conditions: a high-frequency modulated polymerization process in the transient regime, a low-frequency modulated process in the sliding regime at both low and high temperatures and a degradation process in the absence of free monomers. The complete and consistent ab initio data set compiled in this work predicts a good agreement when benchmarked via kMC simulations against experimental data, which is a technique never used before for computational chemistry. The simulation results show that these two newly proposed approaches are promising for bridging the gap between experimental and computational chemistry methods in polymer reaction engineering. Full article
(This article belongs to the Special Issue Polymer Physics: From Theory to Experimental Applications)
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31 pages, 7460 KB  
Article
Evaluation of Thermodynamic and Kinetic Contributions to Over-Extraction of Extractables by Nonpolar Organic Solvents in Comparison to Lipids in Exhaustive and Exaggerated Extractions of Medical Devices Based on Abraham Solvation Model and Solvent–Material Interactions Using Low-Density Polyethylene as a Representative Material
by Jianwei Li
Liquids 2024, 4(1), 117-147; https://doi.org/10.3390/liquids4010006 - 23 Jan 2024
Cited by 4 | Viewed by 2611
Abstract
The thermodynamic and kinetic contributions to the over-extraction of extractables by nonpolar organic solvents relative to biological lipids in exhaustive and exaggerated extractions of medical devices are studied based on the Abraham solvation model and solvent–material interactions, using low-density polyethylene (LDPE) as an [...] Read more.
The thermodynamic and kinetic contributions to the over-extraction of extractables by nonpolar organic solvents relative to biological lipids in exhaustive and exaggerated extractions of medical devices are studied based on the Abraham solvation model and solvent–material interactions, using low-density polyethylene (LDPE) as an exemplary material. The thermodynamic effect is evaluated by the partition constant of extractables between LDPE and extraction solvents, hexane and lipids, defined as the concentration in the polymer phase divided by the concentration in the solvent phase. The Abraham solvation model is used to correlate the measured LDPE-lipid partition constant (log10Pldpe/lipid) to construct the predictive model. Similar models are also derived from the thermodynamic cycle conversion, using the system constants of LDPE-water and Lipid-water partition systems. These constructed models, together with the predictive LDPE-hexane (log10Pldpe/hexane) model established from a previous study, are used to predict and compare the ranges and values of Pldpe/s (s = lipids and hexane) for the observed LDPE extractables over a wide hydrophobicity range in log10Po/w from zero to 30. The solvent-LDPE interactions are examined by the degree of swelling of LDPE by hexane (or other nonpolar solvents) and lipids, including the solvent diffusion rates into the material. These parameters allow the evaluation of kinetic effect on the over-extraction. The extent of over-extraction is compiled directly by experimental “overall” or “specific” migration data or indirectly calculated by the diffusion coefficient of extractables when extracted by hexane or lipids. It is concluded from this study that the extractables distribution between LDPE and lipids highly favors the lipid phase thermodynamically (Pldpe/lipid<1), and the values of Pldpe/lipid are always lower than those of Pldpe/hexane, thereby indicating that the thermodynamic effect is not the cause of over-extraction. It is the kinetic effect that dominantly contributes to the over-extraction, as supported by the material swelling and solvent diffusion rates. Finally, the extent of over-extraction has been established from a few folds to over a hundred-fold, and the median value is 7. Furthermore, the methods adopted and developed in this study can be invaluable tools in other disciplines such as the reliable prediction of extractables from other device materials and environmental sampling. Full article
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16 pages, 744 KB  
Review
Rumen Solubility of Copper, Manganese and Zinc and the Potential Link between the Source and Rumen Function: A Systematic Review
by Antal Vigh, Adriana Dalila Criste, Nicolae Corcionivoschi and Christine Gerard
Agriculture 2023, 13(12), 2198; https://doi.org/10.3390/agriculture13122198 - 25 Nov 2023
Cited by 6 | Viewed by 3112
Abstract
The dietary inclusion of trace minerals (TMs), such as copper (Cu), manganese (Mn) and zinc (Zn), is of importance to cover the ever-evolving requirements for growth, production and reproduction in ruminants. Various sources of TMs are commercially available, such as inorganic (ITM), organic [...] Read more.
The dietary inclusion of trace minerals (TMs), such as copper (Cu), manganese (Mn) and zinc (Zn), is of importance to cover the ever-evolving requirements for growth, production and reproduction in ruminants. Various sources of TMs are commercially available, such as inorganic (ITM), organic (OTM) or hydroxy (HTM) forms; however, their bioavailability and efficiency to improve ruminant zootechnical parameters may be highly influenced by ruminal solubility and effects on the rumen environment. The objective of this review was to compile the most up-to-date information on the ruminal solubility of ITMs, OTMs and HTMs and their effects on fermentation parameters and rumen microbiota, aiming to support specialists from the animal feed industry when choosing TM products for ruminant supplementation. Some commonly used ITM sources, like sulfates, have a high ruminal solubility, while oxides are less soluble. The ruminal solubility of OTMs is mostly found to be high; however, data on these TM forms are still lacking. Regarding HTMs, ruminal solubility is reported to be low; nevertheless, results are inconsistent. Considering rumen fermentation, ITMs show a negative effect, OTMs might improve, while HTMs do not affect parameters like dry matter degradability, volatile fatty acid production, pH or microbial protein synthesis. As for rumen microbiota, ITMs do not affect microbial populations; OTMs could decrease the abundance of some specific bacteria, like fibrolytic microorganisms, while studies with HTMs are missing or inconclusive. Further research is necessary to better understand the ruminal solubility kinetics of TM sources and the different interactions with fermentation parameters and rumen microbiota to successfully apply the precision TM supplementation of ruminants, tackling deficiency occurrences. Full article
(This article belongs to the Section Farm Animal Production)
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10 pages, 252 KB  
Review
Focus of Attention in Coach Instructions for Technique Training in Sports: A Scrutinized Review of Review Studies
by Inge Werner and Peter Federolf
J. Funct. Morphol. Kinesiol. 2023, 8(1), 7; https://doi.org/10.3390/jfmk8010007 - 8 Jan 2023
Cited by 6 | Viewed by 4657
Abstract
Literature reports superior performance when focusing one’s attention during a movement on environmental effects of that movement (external focus, EF) compared to focusing on the moving body (internal focus, IF). Nevertheless, IF instructions still play an important role in the daily practice of [...] Read more.
Literature reports superior performance when focusing one’s attention during a movement on environmental effects of that movement (external focus, EF) compared to focusing on the moving body (internal focus, IF). Nevertheless, IF instructions still play an important role in the daily practice of coaches, trainers, and therapists. The current review compiles evidence for focus-of-attention concepts on movement form corrections and technique training. Reviews on the topic and selected additional papers addressing the effect of attentional focus on movement form or on kinetic, kinematic or muscle activity data were included. Both EF and IF instructions affect movement form. The reviews revealed that IF instructions seem to be better applicable to direct movement form changes than EF instructions. In contrast, EF instructions better facilitate optimization within the whole-body coordination, often resulting in better performance outcomes not directly linked to movement pattern changes. Several studies discuss focus-of-attention effects in the context of the optimal feedback control theory expanding on the constrained action hypothesis. In summary, EF and IF instructions both affect form and performance of movements, however, their relative efficacy is situation dependent. The often-purported superiority of EF over IF instructions cannot be generalized to all application contexts. Full article
(This article belongs to the Special Issue Exercise Evaluation and Prescription—3rd Edition)
28 pages, 20202 KB  
Article
Mechanism, Kinetics and Thermodynamics of Decomposition for High Energy Derivatives of [1,2,4]Triazolo[4,3-b][1,2,4,5]tetrazine
by Aleksandr V. Stankevich, Svetlana G. Tolshchina, Anna V. Korotina, Gennady L. Rusinov, Irina V. Chemagina and Valery N. Charushin
Molecules 2022, 27(20), 6966; https://doi.org/10.3390/molecules27206966 - 17 Oct 2022
Cited by 6 | Viewed by 3027
Abstract
This paper presents the data of research studies on the mechanisms, kinetics and thermodynamics of decomposition of three high-energy compounds: [1,2,4]triazolo[4,3-b][1,2,4,5]tetrazine-3,6-diamine (TTDA), 3-amino-6-hydrazino[1,2,4]triazolo[4,3-b][1,2,4,5]tetrazine (TTGA) and 3,6-dinitroamino[1,2,4]triazolo[4,3-b][1,2,4,5]tetrazine (DNTT). The points of change of the reaction mechanisms under thermal [...] Read more.
This paper presents the data of research studies on the mechanisms, kinetics and thermodynamics of decomposition of three high-energy compounds: [1,2,4]triazolo[4,3-b][1,2,4,5]tetrazine-3,6-diamine (TTDA), 3-amino-6-hydrazino[1,2,4]triazolo[4,3-b][1,2,4,5]tetrazine (TTGA) and 3,6-dinitroamino[1,2,4]triazolo[4,3-b][1,2,4,5]tetrazine (DNTT). The points of change of the reaction mechanisms under thermal effects with different intensities from 0.1 to 2000 s−1 have been established. The values of activation and induction energies for the limiting stages of decomposition have been obtained. The formation of nanostructured carbon nitride (α-C3N4) in condensed decomposition products, cyanogen (C2N2) and hydrogen cyanide (HCN) in gaseous products have been shown. Concentration-energy diagrams for the reaction products have been compiled. The parameters of heat resistance and thermal safety proved to be: 349.5 °C and 358.2 °C for TTDA; 190.3 °C and 198.0 °C for TTGA; 113.4 °C and 114.1 °C for DNTT. The energy and thermodynamic properties have also been estimated. This work found the activation energy of the decomposition process to be 129.0 kJ/mol for TTDA, 212.2 kJ/mol for TTGA and 292.2 kJ/mol for DNTT. The average induction energy of the catalytic process (Ecat) for TTGA was established to be 21 kJ/mol, and for DNTT-1500–1700 kJ/mol. The induction energy of the inhibition process (Eing) of TTDA was estimated to be 800–1400 kJ/mol. Full article
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15 pages, 4506 KB  
Article
Effects of Different Nozzle Orifice Shapes on Water Droplet Characteristics for Sprinkler Irrigation
by Lin Hua, Yue Jiang, Hong Li and Longtan Qin
Horticulturae 2022, 8(6), 538; https://doi.org/10.3390/horticulturae8060538 - 16 Jun 2022
Cited by 17 | Viewed by 4186
Abstract
In common irrigation systems, sprinklers are mounted with circular nozzles, but innovative noncircular nozzles can save water and energy by improving fragmentation in a low–intermediate pressure irrigation system. In order to investigate the effects of nozzle orifice shapes (circular, square, and equilateral triangular) [...] Read more.
In common irrigation systems, sprinklers are mounted with circular nozzles, but innovative noncircular nozzles can save water and energy by improving fragmentation in a low–intermediate pressure irrigation system. In order to investigate the effects of nozzle orifice shapes (circular, square, and equilateral triangular) on droplet characteristics, experiments using high-speed photography and water droplet spectrum measurement were performed. Using ImageJ to observe with the overlapped droplets and using the self-compiled programs of MATLAB to observe the morphology of droplets, we extracted the outlines of droplets. In addition, several empirical formulas for the prediction of droplets were obtained by way of a regression analysis of the experimental data. In particular, the shape coefficient of the nozzle orifice and the operating pressure of the nozzle were added to these formulas as variable factors to make them applicable to a variety of nozzles and working conditions. The results show that with the increase in shape coefficient, the jet atomization intensifies, and the droplets breaking from the jet will be dense and uniform. The velocity distribution of the droplets conforms to exponential functions (R2 > 0.7). The prediction formulas of diameter and kinetic energy were established with coefficients of determination exceeding 0.95. In low pressure conditions, the specific power multiplies at the end of spraying, and the maximum is proportional to the nozzle orifice coefficient. The impact-driven arm compensates for the disadvantage of the noncircular nozzles with the high irrigation-specific power, by producing a wider diameter gradient of droplets. Therefore, innovative sprinklers based on noncircular nozzles can be applied in a low–intermediate pressure system to increase water use efficiency, reduce energy consumption, and reduce costs. Full article
(This article belongs to the Special Issue Advanced of Horticulture Innovative Irrigation Technologies)
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12 pages, 1632 KB  
Review
Staphylococcus schweitzeri—An Emerging One Health Pathogen?
by Chantal Akoua-Koffi, Adèle Kacou N’Douba, Joseph Allico Djaman, Mathias Herrmann, Frieder Schaumburg and Silke Niemann
Microorganisms 2022, 10(4), 770; https://doi.org/10.3390/microorganisms10040770 - 2 Apr 2022
Cited by 7 | Viewed by 5431
Abstract
The Staphylococcus aureus-related complex is formed by the Staphylococcus aureus, Staphylococcus schweitzeri, Staphylococcus argenteus, Staphylococcus roterodami and Staphylococcus singaporensis. Within this complex, S. schweitzeri is the only species mainly found in African wildlife, but it is rarely detected [...] Read more.
The Staphylococcus aureus-related complex is formed by the Staphylococcus aureus, Staphylococcus schweitzeri, Staphylococcus argenteus, Staphylococcus roterodami and Staphylococcus singaporensis. Within this complex, S. schweitzeri is the only species mainly found in African wildlife, but it is rarely detected as a colonizer in humans or as a contaminant of fomites. The few detections in humans are most likely spillover events after contact with wildlife. However, since S. schweitzeri can be misidentified as S. aureus using culture-based routine techniques, it is likely that S. schweitzeri is under-reported in humans. The low number of isolates in humans, though, is consistent with the fact that the pathogen has typical animal adaptation characteristics (e.g., growth kinetics, lack of immune evasion cluster and antimicrobial resistance); however, evidence from selected in vitro assays (e.g., host cell invasion, cell activation, cytotoxicity) indicate that S. schweitzeri might be as virulent as S. aureus. In this case, contact with animals colonized with S. schweitzeri could constitute a risk for zoonotic infections. With respect to antimicrobial resistance, all described isolates were found to be susceptible to all antibiotics tested, and so far no data on the development of spontaneous resistance or the acquisition of resistance genes such the mecA/mecC cassette are available. In summary, general knowledge about this pathogen, specifically on the potential threat it may incur to human and animal health, is still very poor. In this review article, we compile the present state of scientific research, and identify the knowledge gaps that need to be filled in order to reliably assess S. schweitzeri as an organism with global One Health implications. Full article
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28 pages, 11645 KB  
Article
Estimation of Grey-Box Dynamic Model of 2-DOF Pneumatic Actuator Robotic Arm Using Gravity Tests
by Monika Trojanová, Tomáš Čakurda, Alexander Hošovský and Tibor Krenický
Appl. Sci. 2021, 11(10), 4490; https://doi.org/10.3390/app11104490 - 14 May 2021
Cited by 28 | Viewed by 7862
Abstract
This article describes the dynamics of a manipulator with two degrees of freedom, while the dynamic model of the manipulator’s arm is derived using Lagrangian formalism, which considers the difference between the kinetic and potential energy of the system. The compiled dynamic model [...] Read more.
This article describes the dynamics of a manipulator with two degrees of freedom, while the dynamic model of the manipulator’s arm is derived using Lagrangian formalism, which considers the difference between the kinetic and potential energy of the system. The compiled dynamic model was implemented in Matlab, taking into account the physical parameters of the manipulator and friction term. Physical parameters were exported from the 3D CAD model. A scheme (model) was compiled in the Simulink, which was used for the subsequent validation process. The outputs of the validations were compared with measured data of joint angles from the system (expected condition) obtained by using gravity tests. For obtaining better results were parameters of the model optimizing by using the Trust Region Algorithm for Nonlinear Least Squares optimization method. Therefore, the aim of the research described in the article is the comparison of the model with the parameters that come from CAD and its improvement by estimating the parameters based on gravitational measurements. The model with estimated parameters achieved an improvement in the results of the Normal Root Mean Square Error compared to the model with CAD parameters. For link 1 was an improvement from 28.49% to 67.93% depending on the initial joint angle, and for link 2, from 63.84% to 66.46%. Full article
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23 pages, 1895 KB  
Article
Homogeneous Freezing of Water Using Microfluidics
by Mark D. Tarn, Sebastien N. F. Sikora, Grace C. E. Porter, Jung-uk Shim and Benjamin J. Murray
Micromachines 2021, 12(2), 223; https://doi.org/10.3390/mi12020223 - 23 Feb 2021
Cited by 16 | Viewed by 3861
Abstract
The homogeneous freezing of water is important in the formation of ice in clouds, but there remains a great deal of variability in the representation of the homogeneous freezing of water in the literature. The development of new instrumentation, such as droplet microfluidic [...] Read more.
The homogeneous freezing of water is important in the formation of ice in clouds, but there remains a great deal of variability in the representation of the homogeneous freezing of water in the literature. The development of new instrumentation, such as droplet microfluidic platforms, may help to constrain our understanding of the kinetics of homogeneous freezing via the analysis of monodisperse, size-selected water droplets in temporally and spatially controlled environments. Here, we evaluate droplet freezing data obtained using the Lab-on-a-Chip Nucleation by Immersed Particle Instrument (LOC-NIPI), in which droplets are generated and frozen in continuous flow. This high-throughput method was used to analyse over 16,000 water droplets (86 μm diameter) across three experimental runs, generating data with high precision and reproducibility that has largely been unrepresented in the microfluidic literature. Using this data, a new LOC-NIPI parameterisation of the volume nucleation rate coefficient (JV(T)) was determined in the temperature region of −35.1 to −36.9 °C, covering a greater JV(T) compared to most other microfluidic techniques thanks to the number of droplets analysed. Comparison to recent theory suggests inconsistencies in the theoretical representation, further implying that microfluidics could be used to inform on changes to parameterisations. By applying classical nucleation theory (CNT) to our JV(T) data, we have gone a step further than other microfluidic homogeneous freezing examples by calculating the stacking-disordered ice–supercooled water interfacial energy, estimated to be 22.5 ± 0.7 mJ m−2, again finding inconsistencies when compared to theoretical predictions. Further, we briefly review and compile all available microfluidic homogeneous freezing data in the literature, finding that the LOC-NIPI and other microfluidically generated data compare well with commonly used non-microfluidic datasets, but have generally been obtained with greater ease and with higher numbers of monodisperse droplets. Full article
(This article belongs to the Special Issue Microfluidic Platforms for Ice Nucleation Studies)
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19 pages, 7177 KB  
Review
A Series of Data-Driven Hypotheses for Inferring Biogeochemical Conditions in Alkaline Lakes and Their Deposits Based on the Behavior of Mg and SiO2
by Jasmine E. Chase, Maria L. Arizaleta and Benjamin M. Tutolo
Minerals 2021, 11(2), 106; https://doi.org/10.3390/min11020106 - 22 Jan 2021
Cited by 20 | Viewed by 3847
Abstract
Alkaline (pH > 8.5) lakes have been common features of Earth’s surface environments throughout its history and are currently among the most biologically productive environments on the planet. The chemistry of alkaline lakes favors the deposition of aluminum-poor magnesian clays (e.g., sepiolite, stevensite, [...] Read more.
Alkaline (pH > 8.5) lakes have been common features of Earth’s surface environments throughout its history and are currently among the most biologically productive environments on the planet. The chemistry of alkaline lakes favors the deposition of aluminum-poor magnesian clays (e.g., sepiolite, stevensite, and kerolite) whose chemistry and mineralogy may provide a useful record of the biogeochemistry of the lake waters from which they were precipitated. In this forward-looking review, we present six data-driven, testable hypotheses devoted to furthering our understanding of the biogeochemical conditions in paleolake waters based on the geochemical behavior of Mg and SiO2. In the development of these hypotheses, we bring together a compilation of modern lake water chemistry, recently published and new experimental data, and empirical, thermodynamic, and kinetic relationships developed from these data. We subdivide the hypotheses and supporting evidence into three categories: (1) interpreting paleolake chemistry from mineralogy; (2) interpreting the impact of diatoms on alkaline lake sedimentation; and (3) interpreting depositional mineralogy based on water chemistry. We demonstrate the need for further investigation by discussing evidence both for and against each hypothesis, which, in turn, highlights the gaps in our knowledge and the importance of furthering our understanding of the relevant geological and biological systems. The focused testing of these hypotheses against modern occurrences and the geologic record of alkaline lakes can have profound implications for the interpretation of the paleo-biogeochemistry and paleohabitability of these systems on Earth and beyond. Full article
(This article belongs to the Special Issue 10th Anniversary of Minerals: Frontiers of Mineral Science)
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33 pages, 2302 KB  
Review
Mechanisms Applied by Protein Inhibitors to Inhibit Cysteine Proteases
by Livija Tušar, Aleksandra Usenik, Boris Turk and Dušan Turk
Int. J. Mol. Sci. 2021, 22(3), 997; https://doi.org/10.3390/ijms22030997 - 20 Jan 2021
Cited by 22 | Viewed by 7033
Abstract
Protein inhibitors of proteases are an important tool of nature to regulate and control proteolysis in living organisms under physiological and pathological conditions. In this review, we analyzed the mechanisms of inhibition of cysteine proteases on the basis of structural information and compiled [...] Read more.
Protein inhibitors of proteases are an important tool of nature to regulate and control proteolysis in living organisms under physiological and pathological conditions. In this review, we analyzed the mechanisms of inhibition of cysteine proteases on the basis of structural information and compiled kinetic data. The gathered structural data indicate that the protein fold is not a major obstacle for the evolution of a protease inhibitor. It appears that nature can convert almost any starting fold into an inhibitor of a protease. In addition, there appears to be no general rule governing the inhibitory mechanism. The structural data make it clear that the “lock and key” mechanism is a historical concept with limited validity. However, the analysis suggests that the shape of the active site cleft of proteases imposes some restraints. When the S1 binding site is shaped as a pocket buried in the structure of protease, inhibitors can apply substrate-like binding mechanisms. In contrast, when the S1 binding site is in part exposed to solvent, the substrate-like inhibition cannot be employed. It appears that all proteases, with the exception of papain-like proteases, belong to the first group of proteases. Finally, we show a number of examples and provide hints on how to engineer protein inhibitors. Full article
(This article belongs to the Special Issue Biocatalysis: Mechanisms of Proteolytic Enzymes)
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39 pages, 2595 KB  
Review
Form Follows Function: Structural and Catalytic Variation in the Class A Flavoprotein Monooxygenases
by Karen Crozier-Reabe and Graham R. Moran
Int. J. Mol. Sci. 2012, 13(12), 15601-15639; https://doi.org/10.3390/ijms131215601 - 23 Nov 2012
Cited by 65 | Viewed by 12073
Abstract
Flavoprotein monooxygenases (FPMOs) exhibit an array of mechanistic solutions to a common chemical objective; the monooxygenation of a target substrate. Each FPMO efficiently couples reduction of a flavin cofactor by NAD(P)H to oxygenation of the target substrate via a (hydro)peroxyflavin intermediate. This purpose [...] Read more.
Flavoprotein monooxygenases (FPMOs) exhibit an array of mechanistic solutions to a common chemical objective; the monooxygenation of a target substrate. Each FPMO efficiently couples reduction of a flavin cofactor by NAD(P)H to oxygenation of the target substrate via a (hydro)peroxyflavin intermediate. This purpose of this review is to describe in detail the Class A flavoprotein hydroxylases (FPMO) in the context of the other FPMO classes (B–F). Both one and two component FPMOs are found in nature. Two-component enzymes require, in addition to the monooxygenase, the involvement of a reductase that first catalyzes the reduction of the flavin by NAD(P)H. The Class A and B FPMOs are single-component and manage to orchestrate the same net reaction within a single peptide. The Class A enzymes have, by some considerable margin, the most complete research record. These enzymes use choreographed movements of the flavin ring that facilitate access of the organic substrates to the active site, provide a means for interaction of NADPH with the flavin, offer a mechanism to sequester the dioxygen reduction chemistry from solvent and a means to release the product. The majority of the discrete catalytic events of the catalytic cycle can be observed directly in exquisite detail using spectrophotometric kinetic methods and many of the key mechanistic conclusions are further supported by structural data. This review attempts to compile each of the key observations made for both paradigm and newly discovered examples of Class A FPMOs into a complete catalytic description of one enzymatic turnover. Full article
(This article belongs to the Special Issue Flavins)
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