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17 pages, 3387 KB  
Article
Comprehensive Investigation of Iron Salt Effects on Membrane Bioreactor from Perspective of Controlling Iron Leakage
by Qiaoying Wang, Bingbing Zhang, Jicheng Sun, Wenjia Zheng, Jie Zhang and Zhichao Wu
Membranes 2025, 15(10), 297; https://doi.org/10.3390/membranes15100297 - 30 Sep 2025
Abstract
Although adding iron salts can improve phosphorus removal in membrane bioreactor (MBR) processes, overdosing iron salts may result in excessive iron concentrations in the effluent and pose risks of surface water contamination. In this study, an optimized iron salt dosing method was proposed [...] Read more.
Although adding iron salts can improve phosphorus removal in membrane bioreactor (MBR) processes, overdosing iron salts may result in excessive iron concentrations in the effluent and pose risks of surface water contamination. In this study, an optimized iron salt dosing method was proposed to comprehensively investigate its effects on the performance of MBRs and the control of iron leakage. The results showed that batch dosing of solid iron salts (Fe2(SO4)3) into the influent or activated sludge maintained an effluent Fe3+ concentration below 1.0 mg/L and a total phosphorus (TP) concentration below 0.30 mg/L. Long-term operation of the MBR (under conditions of HRT = 4.3 h, SRT = 20 d, and MLSS = 12 g/L) showed that batch dosing of solid iron salts led to an increase in the effluent ammonia–nitrogen (NH3-N) concentration, and the nitrification effect was restored after supplementing the alkalinity. Iron salts increased the TP removal rate by approximately 40% while inhibiting the biological phosphorus removal capacity. The average Fe3+ concentration in the membrane effluent (0.23 ± 0.11 mg/L) met China’s Environmental Quality Standard for Surface Water (GB3838-2002). This study demonstrates that batch dosing of solid iron salts effectively controls iron concentration in the MBR effluent while preventing secondary pollution. The mechanisms of the impact of iron salts on MBR performance provide crucial theoretical and technical support for MBR process optimization. Full article
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16 pages, 4987 KB  
Article
Nitrogen Transformation Survival Strategies of Ammonia-Oxidizing Bacterium N.eA1 Under High Nitrite Stress
by Zhiyao Yan, Kai Li, Yuhang Liu, Zhijun Ren, Xueying Li and Haobin Yang
Sustainability 2025, 17(19), 8708; https://doi.org/10.3390/su17198708 - 27 Sep 2025
Abstract
Ammonia-oxidizing bacteria (AOB) are key to the nitrogen cycle, but their resistance to nitrite (NO2-N) accumulation is unclear. This study examined N.eA1, an AOB from the completely autotrophic nitrogen removal over nitrite (CANON) process, assessing its adaptive responses to [...] Read more.
Ammonia-oxidizing bacteria (AOB) are key to the nitrogen cycle, but their resistance to nitrite (NO2-N) accumulation is unclear. This study examined N.eA1, an AOB from the completely autotrophic nitrogen removal over nitrite (CANON) process, assessing its adaptive responses to NO2-N. The ammonia oxidation and N2O emission were evaluated at varying NO2-N levels, and 3D fluorescence, extracellular polymeric substances (EPS), and soluble microbial products (SMP) analysis were used to probe stress responses. Cellular respiration and key enzyme activities were measured, and proteomics was applied to study protein expression changes. Results showed that higher NO2-N levels boosted N2O production, inhibited nitrification, and stimulated denitrification in N.eA1. At 100 mg·L−1 NO2-N, EPS rose and SMP fell, with ammonia monooxygenase (AMO) suppressed and nitrite reductase (NIR) as well as nitric oxide reductase (NOR) enhanced. Gene expression analysis revealed decreased AMO, hydroxylamine oxidoreductase (HAO), and energy transport-related enzymes, but increased NIR and NOR genes. The downregulation of electron transport complex genes offered insights into molecular adaptation to nitrite stress of N.eA1, highlighting the interplay between metabolic and genetic responses, which is essential for developing sustainable and efficient nitrogen management strategies. Full article
(This article belongs to the Special Issue Sustainability and Advanced Research on Microbiology)
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23 pages, 2328 KB  
Article
Constructed Wetlands with Novel Substrate Exposed to Nano-Plastics: Mitigating the Effects of Substrate Enzyme and Ecological Processes
by Luming Wang, Juan Huang, Jing Tuo, Jin Xu and Xinwei Li
Toxics 2025, 13(9), 800; https://doi.org/10.3390/toxics13090800 - 20 Sep 2025
Viewed by 287
Abstract
The widespread occurrence of nano-plastics (NPs) in aquatic environments poses emerging challenges to the pollutant removal performance and ecological stability of constructed wetlands (CWs). This study investigates the performance of calcium-modified (Ca-MBF) and manganese-modified basalt fiber (Mn-MBF) bio-nests as novel substrates to mitigate [...] Read more.
The widespread occurrence of nano-plastics (NPs) in aquatic environments poses emerging challenges to the pollutant removal performance and ecological stability of constructed wetlands (CWs). This study investigates the performance of calcium-modified (Ca-MBF) and manganese-modified basalt fiber (Mn-MBF) bio-nests as novel substrates to mitigate NP-induced inhibition of CWs. Laboratory-scale CWs were operated for 180 days to evaluate substrate-associated enzyme activities, microbial community structure, and functional gene profiles. Results showed that Mn-MBF bio-nests enhanced the activities of dehydrogenase (DHA), urease (UR), ammonia monooxygenase (AMO), nitrite oxidoreductase (NOR), nitrate reductase (NAR), nitrite reductase (NIR), and phosphatase (PST) by 86.2%, 65.5%, 127.0%, 62.8%, 131.5%, 65.3%, and 107.0%, respectively, compared with the control. In contrast, Ca-MBF bio-nests increased these enzyme activities by 48.6%, 53.5%, 67.0%, 30.6%, 95.0%, 45.3%, and 54.6%, respectively. MBF bio-nests also enhanced microbial diversity, enriched denitrifying and phosphorus-removing bacteria (e.g., Thauera, Plasticicumulans), and promoted extracellular polymeric substance secretion. Functional gene prediction indicated elevated abundances of nitrogen cycle-related genes, thereby enhancing nitrification, denitrification, and phosphorus removal processes. These synergistic effects collectively improved nitrification, denitrification, and phosphorus removal efficiency, with Mn-MBF showing superior performance. This study highlights MBF bio-nests as a sustainable strategy to enhance the resilience and long-term operational stability of CWs in environments impacted by nano-plastic pollution. Full article
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17 pages, 2538 KB  
Article
Contrasting Roles of Archaeal Core Clusters in Soil Nitrification of Northeast China’s Black Soil Region
by Feng Wang, Lingzhi Liu, Weijun Zhang, Keren Wu, Bingqing Guo, Tingting An, Shuangyi Li, Xiaodan Gao and Jingkuan Wang
Agronomy 2025, 15(9), 2064; https://doi.org/10.3390/agronomy15092064 - 27 Aug 2025
Viewed by 617
Abstract
The black soil region of Northeast China is crucial for agricultural productivity. Ammonia-oxidizing archaea (AOA) are key indicators of soil nitrification in this region, yet it remains unclear whether this process is driven by the entire community or by specific clusters. Here, we [...] Read more.
The black soil region of Northeast China is crucial for agricultural productivity. Ammonia-oxidizing archaea (AOA) are key indicators of soil nitrification in this region, yet it remains unclear whether this process is driven by the entire community or by specific clusters. Here, we investigated the AOA community across a long-term fertilization Brown Soil Experimental Station and 15 sites in the Typical Black Soil Zone. Using Illumina MiSeq sequencing of the AOA amoA gene and cluster-specific primers, 14 OTUs were selected as core clusters based on relative abundance >0.1% and strong correlations (r > 0.7) with soil properties or PNR, and were further grouped into five distinct clusters according to phylogenetic analysis. Compared to the overall AOA community, core clusters responded more precisely to fertilization, straw addition, and spatial variation, with contrasting environmental responses reflected in their relationships with soil nitrification dynamics. Clusters G1 and G2 had positive correlations with soil PNR, while Clusters G4 and G5 had negative correlations. Moreover, AOA core clusters demonstrated stronger correlations with soil properties, including pH, C/N ratio, and NH4+/NO3 ratio. These findings demonstrate that AOA core clusters are reliable microbial indicators of soil nitrification, and monitoring their abundance changes under nitrogen input can provide early insights into potential inhibition, informing predictive models and guiding more precise nitrogen management to support sustainable agricultural practices. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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19 pages, 1887 KB  
Article
Peatland Pond Microbiome and Biogeochemical Responses to Solar Radiation Extremes in a High-Altitude Wetland, Salar de Huasco, Chile
by Yoanna Eissler, Alfredo Yanez-Montalvo, Paula S. M. Celis-Plá, Marcela Cornejo-D’Ottone, Andrés Trabal, Cristina Dorador, Claudia Piccini, Luisa I. Falcón, Carlos Romero, Polette Aguilar-Muñoz and Verónica Molina
Microorganisms 2025, 13(9), 1990; https://doi.org/10.3390/microorganisms13091990 - 26 Aug 2025
Viewed by 1112
Abstract
High-altitude wetland holds unique peatland ponds subjected to extreme diel environmental condition changes. Herein, we evaluate the response of photoautotrophic and nitrification activities and compare it with bacteria and archaea composition shifts in sediment and water changes during key hours of the day. [...] Read more.
High-altitude wetland holds unique peatland ponds subjected to extreme diel environmental condition changes. Herein, we evaluate the response of photoautotrophic and nitrification activities and compare it with bacteria and archaea composition shifts in sediment and water changes during key hours of the day. Results indicate the presence of photo-inhibition, including ammonia oxidizers, but a high recovery of photosynthetic activities in the microbial mat and of potential specific functional groups towards the afternoon. The microbial community was composed of 45 phyla, mainly proteobacteria from Alpha-, Delta-, and Gammaproteobacteria and Bacteroidota in the water and sediments, and these later groups were notoriously enriched during the afternoon. The microbial community composition changes were associated with chlorophyll a, nutrients, and greenhouse gases reservoir variability, including methane potential release towards the atmosphere at hours of high radiation. Peatland pond microbial communities and their biogeochemical contribution change in a complex interplay coupled by time to environmental conditions predominantly driven by the extreme solar radiation. Full article
(This article belongs to the Special Issue Microbial Life and Ecology in Extreme Environments)
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10 pages, 658 KB  
Article
Soil Nitrification Rate Is Affected by Plant Species and Nitrogen Levels
by Luca Vitale, Giuseppe Maglione, Francsico Garcia-Sanchez, Lourdes Yabor, Maria Riccardi, Lucia Ottaiano, Bruno Di Matteo, Rosario Nocerino, Antonio Manco and Anna Tedeschi
Agriculture 2025, 15(16), 1740; https://doi.org/10.3390/agriculture15161740 - 14 Aug 2025
Viewed by 385
Abstract
The soil nitrification rate is significantly affected by plant species, and it is also modulated by different nitrogen levels in the soil. There are a wide range of plant species with the capacity to produce biological nitrification inhibitors (hereafter referred to as BNI [...] Read more.
The soil nitrification rate is significantly affected by plant species, and it is also modulated by different nitrogen levels in the soil. There are a wide range of plant species with the capacity to produce biological nitrification inhibitors (hereafter referred to as BNI species). The preliminary results of this study report the influence of three different plant species on the nitrification rates under soil supply with three (0 mM, 3.5 mM, and 7.0 mM) nitrogen levels. The aim was to evaluate the potential of hemp, ryegrass, and sorghum in mitigating nitrification, in order to define a sustainable strategy for improving the nitrogen use efficiency by crops and to limit the nitrogen loss from agroecosystems. Leaf gas exchange measurements were also carried out in this study. Photosynthesis was only affected by nitrogen supply in hemp, resulting in a reduction in CO2 assimilation at nitrogen doses higher than the plant’s requirements. Ryegrass devotes more reductive power towards leaf nitrogen assimilation than sorghum and hemp do. The greatest variation in nitrification rate in response to N was observed in soil cultivated with hemp (which also showed the highest potential nitrification rate), followed by sorghum and ryegrass. We speculate that this occurred because the greater seed sowing density for ryegrass ensured a greater quantity in the soil of molecules acting on nitrification compared to sorghum and hemp, with these latter being sown at lower densities. Our results suggest that sorghum and ryegrass might directly affect nitrification by BNI molecules, whereas hemp might indirectly mitigate nitrification through the nitrogen uptake. However, further research is needed to evaluate the effects exerted by the studied plant species on nitrification rates. Full article
(This article belongs to the Section Agricultural Soils)
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17 pages, 2572 KB  
Article
Impact of Combined Exposure to Copper Nanoparticles, Copper Oxide Nanoparticles, and Pesticides on the Metabolic Activity of Nitrobacter winogradskyi
by Roberto Gajardo, Olga Rubilar, Edgar López-Mena, Gildardo Sanchez-Ante, Paola Fincheira, Miguel Martinez, Mauricio Schoebitz, Ricardo Tighe-Neira, Claudio Inostroza-Blancheteau, Leonardo Bardelhe and Gonzalo Tortella-Fuentes
Int. J. Mol. Sci. 2025, 26(13), 6391; https://doi.org/10.3390/ijms26136391 - 2 Jul 2025
Viewed by 603
Abstract
Copper nanoparticles (CuNPs) are increasingly used in agriculture either alone or in combination with pesticides. Recognizing the potential hazards of CuNPs in soil environments, our study evaluated their effects on the metabolic activity of Nitrobacter winogradskyi ATCC 2539, a chemolithoautotrophic bacterium crucial for [...] Read more.
Copper nanoparticles (CuNPs) are increasingly used in agriculture either alone or in combination with pesticides. Recognizing the potential hazards of CuNPs in soil environments, our study evaluated their effects on the metabolic activity of Nitrobacter winogradskyi ATCC 2539, a chemolithoautotrophic bacterium crucial for the nitrification process, which involves the oxidation of nitrite to nitrate in soil ecosystems. This study evaluated the effects of concentration ranges of CuNPs (2.5 to 162.7 mg L−1), CuONPs (3.2 to 203.6 mg L−1), and various pesticides (iprodione, carbendazim, and 2,4-D) and their derivatives (3,5-dichloroaniline, catechol, and 2,4-dichlorophenol) at concentrations ranging from 0.04 to 2.56 mM. CuSO4 was also used as a control for comparative purposes. Our findings indicated that the CuNPs significantly inhibited the metabolic activity of N. winogradskyi, resulting in a reduction of up to 95% at concentrations of ≥2.5 mg L−1. The CuONPs were less toxic, while the pesticides and their derivatives generally showed lower toxicity. Notably, combinations of CuNPs with pesticides or their derivatives maintained high toxicity levels comparable to those of the CuNPs alone. According to the Loewe additivity model, these effects were largely additive and primarily associated with CuNPs or CuONPs. Protein profiling using matrix-assisted laser desorption/ionization (MALDI) time-of-flight (TOF)/TOF mass spectrometry (MS) revealed that carbendazim induced noticeable changes in protein profiles. These findings underscore the detrimental impacts of CuNPs and CuONPs on the metabolic activity of N. winogradskyi, posing a considerable risk to the health of agricultural soils. Overall, this research provides crucial insights into the risks associated with using CuNPs in agriculture, particularly regarding their potential threat to nitrifying microorganisms in soils. Full article
(This article belongs to the Special Issue Toxicity of Nanoparticles: Second Edition)
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20 pages, 7909 KB  
Article
Mechanisms of Nitrogen Cycling Driven by Salinity in Inland Plateau Lakes, Based on a Haline Gradient Experiment Using Pangong Tso Sediment
by Ruiting Chang, Liang Ao, Zhi Zhang, Qiaojing Qin, Xueli Hu, Guoliang Liao, Yuanhang Zhou, Yu He and Haoyu Xu
Water 2025, 17(12), 1797; https://doi.org/10.3390/w17121797 - 16 Jun 2025
Viewed by 507
Abstract
Pangong Tso, a typical plateau lake exhibiting an east-to-west gradient from freshwater to saline conditions, was used to simulate the migration and transformation of nitrogen compounds under different salinity conditions. This study systematically investigates the effects of salinity on nitrogen cycling and transformation [...] Read more.
Pangong Tso, a typical plateau lake exhibiting an east-to-west gradient from freshwater to saline conditions, was used to simulate the migration and transformation of nitrogen compounds under different salinity conditions. This study systematically investigates the effects of salinity on nitrogen cycling and transformation in Pangong Tso sediments from 12 sites through controlled laboratory experiments and field monitoring across 120 sites. The data analysis method includes correlation analysis, ANOVA, structural equation modeling (SEM), and mixed-effects modeling (MEM). The results demonstrate that salinity significantly affects nitrogen cycling in plateau lakes. Salinity inhibits nitrification, resulting in an accumulation of ammonium nitrogen (NH4+-N), while simultaneously suppressing gaseous nitrogen emissions through the inhibition of denitrification. Salinity has a significant negative effect on nitrite nitrogen (NO2-N), which is attributable to enhanced redox-driven transformations under hypersaline conditions. A salinity threshold of approximately 9‰ was identified, above which nitrite oxidation was strongly inhibited, consistent with the known high salinity sensitivity of nitrite-oxidizing bacteria (NOB). Higher salinity levels correlated positively with increased NH4+-N and total nitrogen (TN) concentrations in overlying water (p < 0.01), and were further supported by observed increases in dissolved organic nitrogen (DON) and dissolved total nitrogen (DTN) along with rising salinity, and vice versa. Full article
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25 pages, 2553 KB  
Review
A Review of Plant-Mediated and Fertilization-Induced Shifts in Ammonia Oxidizers: Implications for Nitrogen Cycling in Agroecosystems
by Durga P. M. Chinthalapudi, William Kingery and Shankar Ganapathi Shanmugam
Land 2025, 14(6), 1182; https://doi.org/10.3390/land14061182 - 30 May 2025
Cited by 1 | Viewed by 1210
Abstract
Nitrogen (N) cycling in agroecosystems is a complex process regulated by both biological and agronomic factors, with ammonia-oxidizing archaea (AOA) and bacteria (AOB) playing pivotal roles in nitrification. Despite extensive fertilizer applications to achieve maximum crop yields, nitrogen use efficiency (NUE) remains less [...] Read more.
Nitrogen (N) cycling in agroecosystems is a complex process regulated by both biological and agronomic factors, with ammonia-oxidizing archaea (AOA) and bacteria (AOB) playing pivotal roles in nitrification. Despite extensive fertilizer applications to achieve maximum crop yields, nitrogen use efficiency (NUE) remains less than ideal, with substantial losses contributing to environmental degradation. This review synthesizes current knowledge on plant-mediated and fertilization-induced shifts in ammonia-oxidizer communities and their implications on nitrogen cycling. We highlight the differential ecological niches of AOA and AOB, emphasizing their responses to plant community composition, root exudates, and allelopathic compounds. Fertilization regimes of inorganic nitrogen inputs and biological nitrification inhibition (BNI) are examined in the context of microbial adaptation and ammonia tolerance. Our review highlights the need for integrated nitrogen management strategies comprising optimized fertilization timing, nitrification inhibitors, and plant–microbe interactions in order to optimize NUE and mitigate nitrogen losses. Future research directions must involve applications of metagenomic and isotopic tracing techniques to unravel the mechanistic AOA and AOB pathways that are involved in regulating these dynamics. An improved understanding of these microbial interactions will inform the creation of more sustainable agricultural systems that aim to optimize nitrogen retention and reduce environmental footprint. Full article
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16 pages, 5916 KB  
Article
Microbial Community Imbalance Drives Nitrous Oxide Emissions from Strongly Acidic Soil—Insights from a Laboratory Experiment with Microbial Inhibitors
by Waqar Ahmed, Hongyang Gong, Xiaoxiao Xiang, Runze Chen, Yumeng Xu, Wenxuan Shi, Binzhe Li, Junhui Yin and Qing Chen
Biology 2025, 14(6), 621; https://doi.org/10.3390/biology14060621 - 28 May 2025
Viewed by 584
Abstract
Nitrous oxide (N2O) is a potent greenhouse gas with intensive emissions from acidic soil. This study explored the impact of the disruption of the microbial balance from microbial inhibitors (streptomycin and cycloheximide) on soil’s N2O emission and nitrogen (N) [...] Read more.
Nitrous oxide (N2O) is a potent greenhouse gas with intensive emissions from acidic soil. This study explored the impact of the disruption of the microbial balance from microbial inhibitors (streptomycin and cycloheximide) on soil’s N2O emission and nitrogen (N) dynamics. Under all the conditions examined, biotic processes accounted for 96–98% of total N2O emissions. High concentrations of streptomycin (6 and 10 mg g−1) reduced N2O emissions from 2.24 μg kg−1 h−1 to 1.93 μg kg−1 h−1 and 2.12 μg kg−1 h−1, respectively, whereas lower concentrations (2 and 4.5 mg g−1) increased emissions from 2.24 μg kg−1 h−1 to 2.95 μg kg−1 h−1 and 3.27 μg kg−1 h−1, respectively. Lower cycloheximide (2 and 4.5 mg g−1) significantly enhanced N2O emissions, reaching 9.15 μg kg−1 h−1 and 5.68 μg kg−1 h−1, respectively, whereas higher dosages (6 mg g−1 and 10 mg g−1) inhibited N2O emissions, reducing them to 5.55 μg kg−1 h−1 and 4.84 μg kg−1 h−1, respectively. Carbon dioxide (CO2) emissions generally decreased with increasing inhibitor dosages but significantly increased at 2 mg g−1 and 4.5 mg g−1 streptomycin. The inhibitors also altered soil N and carbon (C) dynamics, increasing ammonium (NH4+-N), dissolved organic nitrogen (DON), and dissolved organic carbon (DOC) levels. Pearson correlation analysis indicated that N2O emission was negatively correlated with cycloheximide dosage (R = −0.68, p < 0.001), NH4+-N (R = −0.31, p < 0.001) and DOC content (R = −0.57, p < 0.05). These findings highlight the consequences of microbial disruption on N2O emission and the complex microbial interactions in acidic soils. High concentrations of microbial inhibitors effectively reduce N2O emissions by suppressing key microbial groups in nitrification and denitrification. Conversely, lower concentrations may prompt compensatory responses from surviving microorganisms, resulting in increased N2O production. Future research should focus on sustainable management strategies to mitigate N2O emissions while preserving the soil’s microbial community. Full article
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12 pages, 1706 KB  
Article
Effect of Biological Denitrification Inhibitor on N2O Emissions from Paddy Soil and Microbial Mechanisms
by Longfei Wang, Kaikuo Wu, Furong Xiao, Ping Gong, Yan Xue, Yuchao Song, Ruizhuo Wang, Zhijie Wu and Lili Zhang
Microorganisms 2025, 13(6), 1232; https://doi.org/10.3390/microorganisms13061232 - 27 May 2025
Cited by 1 | Viewed by 565
Abstract
The denitrification process is the main process of the soil nitrogen (N) cycle in paddy fields, which leads to the production of large amounts of nitrous oxide (N2O) and increases N loss in paddy soil. Plant-derived bio denitrification inhibitor procyanidins are [...] Read more.
The denitrification process is the main process of the soil nitrogen (N) cycle in paddy fields, which leads to the production of large amounts of nitrous oxide (N2O) and increases N loss in paddy soil. Plant-derived bio denitrification inhibitor procyanidins are thought to inhibit soil denitrification, thereby reducing N2O emissions and soil N loss. However, the denitrification inhibition effect of procyanidins in paddy soils with high organic matter content remains unclear, and their high price is not conducive to practical application. Therefore, this study conducted a 21-day incubation experiment using low-cost proanthocyanidins (containing procyanidins) and paddy soil with high organic matter content in Northeast China to explore the effects of proanthocyanidins on N2O emissions and related microorganisms in paddy soil. The results of the incubation experiment showed that the application of proanthocyanidins in paddy soil in Northeast China could promote the production of N2O in the first three days but inhibited the production of N2O thereafter. Throughout the incubation period, proanthocyanidins inhibited the enzyme nitrate reductase (NaR) activity and the abundance of nirS and nirk denitrifying bacteria, with a significant dose-response relationship. Although the application of proanthocyanidins also reduced the soil nitrate nitrogen (NO3-N) content, the soil NO3-N content increased significantly with increasing incubation time. In addition, the application of proanthocyanidins increased soil microbial respiration, ammonia-oxidizing archaea (AOA) amoA gene abundance, and soil ammonium nitrogen (NH4+-N) content. Therefore, the application of proanthocyanidins to paddy soil in Northeast China can effectively regulate denitrification. However, in future studies, it is necessary to explore the impact of proanthocyanidins on the nitrification process and use them in combination with urease inhibitors and/or nitrification inhibitors to better regulate soil N transformation and reduce N2O emissions in paddy soil. Full article
(This article belongs to the Section Plant Microbe Interactions)
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20 pages, 5767 KB  
Article
Mainstream Wastewater Treatment Process Based on Multi-Nitrogen Removal Under New Anaerobic–Swing–Anoxic–Oxic Model
by Jiashun Cao, Jinyu Wang and Runze Xu
Water 2025, 17(10), 1548; https://doi.org/10.3390/w17101548 - 21 May 2025
Viewed by 1285
Abstract
The Anaerobic–Swing Aerobic–Anoxic–Oxic (ASAO) process was developed to tackle problems such as temperature sensitivity during the Anaerobic–Oxic–Anoxic (AOA) process. By introducing a swing zone (S zone) with adjustable dissolved oxygen (DO), during the 112-day experimentation period, the ASAO system achieved removal rates of [...] Read more.
The Anaerobic–Swing Aerobic–Anoxic–Oxic (ASAO) process was developed to tackle problems such as temperature sensitivity during the Anaerobic–Oxic–Anoxic (AOA) process. By introducing a swing zone (S zone) with adjustable dissolved oxygen (DO), during the 112-day experimentation period, the ASAO system achieved removal rates of 88.18% for total inorganic nitrogen (TIN), 78.23% for total phosphorus (TP), and 99.78% for ammonia nitrogen. Intermittent aeration effectively suppressed nitrite-oxidizing bacteria (NOB), and the chemical oxygen demand (COD) removal rate exceeded 90%, with 60% being transformed into internal carbon sources like polyhydroxyalkanoates (PHAs) and glycogen (Gly). The key functional microorganisms encompassed Dechloromonas (denitrifying phosphorus-accumulating bacteria), Candidatus Competibacter, and Thauera, which facilitated simultaneous nitrification–denitrification (SND) and anaerobic ammonium oxidation (ANAMMOX). The enrichment of Candidatus Brocadia further enhanced the ANAMMOX activity. The flexibility of DO control in the swing zone optimized microbial activity and mitigated temperature dependence, thereby verifying the efficacy of the ASAO process in enhancing the removal rates of nutrients and COD in low-C/N wastewater. The intermittent aeration strategy and the continuous low-dissolved-oxygen (DO) operating conditions inhibited the activity of nitrite-oxidizing bacteria (NOB) and accomplished the elimination of NOB. Full article
(This article belongs to the Section Water Quality and Contamination)
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21 pages, 7883 KB  
Article
Transcriptomic Analysis to Understand the Nitrogen Stress Response Mechanism in BNI-Enabled Wheat
by Chandra Nath Mishra, Sushma Kumari Pawar, Swati Sharma, Arun Thakur, Sabhyata Sabhyata, Shubham Mishra, Satish Kumar, Om Prakash Gupta, Arun Kumar Joshi and Ratan Tiwari
Int. J. Mol. Sci. 2025, 26(10), 4610; https://doi.org/10.3390/ijms26104610 - 12 May 2025
Cited by 1 | Viewed by 726
Abstract
A comparative transcriptomic analysis was conducted for the nitrogen-efficient (BNI-Munal) and derivative parent Munal wheat genotypes to unravel the gene expression patterns across four nitrogen levels (0%, 50%, 75%, and 100%). Analyzing the genes of BNI-enabled wheat helps us understand how they are [...] Read more.
A comparative transcriptomic analysis was conducted for the nitrogen-efficient (BNI-Munal) and derivative parent Munal wheat genotypes to unravel the gene expression patterns across four nitrogen levels (0%, 50%, 75%, and 100%). Analyzing the genes of BNI-enabled wheat helps us understand how they are expressed differently, which heavily influences BNI activity. Grain yield and 1000-grain weight were higher in BNI Munal than in Munal. All the other traits were similar in performance. Varying nitrogen dosages led to significant differences in gene expression patterns between the two genotypes. Genes related to binding and catalytic activity were prevalent among molecular functions, while genes corresponding to cellular anatomical entities dominated the cellular component category. Differential expression was observed in 371 genes at 0%N, 261 genes at 50%N, 303 genes at 75%N, and 736 genes at 100%N. Five unigenes (three upregulated and two downregulated) were consistently expressed across all nitrogen levels. Further analysis of upregulated unigenes identified links to the NrpA gene (involved in nitrogen regulation), tetratricopeptide repeat-containing protein (PPR), and cytokinin dehydrogenase 2. Analysis of downregulated genes pointed to associations with the Triticum aestivum 3BS-specific BAC library, which encodes the NPF (Nitrate and Peptide Transporter Family) and the TaVRN gene family (closely related to the TaNUE1 gene). The five unigenes and one unigene highlighted in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were validated in Munal and BNI Munal. The results obtained will enhance our understanding about gene expression patterns across different nitrogen levels in BNI wheat and help us breed wheat varieties with the BNI trait for improved NUE. Full article
(This article belongs to the Special Issue Plant Nitrogen Metabolism: Current Status and Future Directions)
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14 pages, 3710 KB  
Article
A Robust Oxysalt-Tolerant Bacterium Marinobacter sp. for Simultaneous Nitrification and Denitrification of Hypersaline Wastewater
by Jie Hu, Bing Xu, Jie Gao, Jiabao Yan and Guozhi Fan
Water 2025, 17(10), 1435; https://doi.org/10.3390/w17101435 - 9 May 2025
Viewed by 591
Abstract
Robust strains with high simultaneous nitrification and denitrification (SND) capabilities in hypersaline wastewater, particularly those containing different oxysalts, are rarely reported. Here, an isolated oxysalt-tolerant bacterium, Marinobacter sp. Y2, showed excellent nitrogen removal capabilities of around 98% at 11% salinity of NaCl or [...] Read more.
Robust strains with high simultaneous nitrification and denitrification (SND) capabilities in hypersaline wastewater, particularly those containing different oxysalts, are rarely reported. Here, an isolated oxysalt-tolerant bacterium, Marinobacter sp. Y2, showed excellent nitrogen removal capabilities of around 98% at 11% salinity of NaCl or oxysalts such as Na2SO4, Na2HPO4, NaHCO3, and NaNO3 through response surface methodology optimization. At >5% salinities, Marinobacter sp. Y2 showed superior nitrogen removal performance in oxysalt-laden wastewater compared to chloride-based wastewater. In contrast, other SND strains, including Pseudomonas sp. and Halomonas sp., experienced significant activity inhibition and even bacterial demise in oxysalt-rich wastewater, despite their high halotolerance to NaCl. The excellent SND activities of the oxysalt-tolerant strain were further validated using single and mixed nitrogen sources at 11% Na2SO4 salinity. Moreover, the amplification of nitrogen removal functional genes and the corresponding enzyme activities elucidated the nitrogen metabolism pathway of the strain in harsh oxysalt environments. Full article
(This article belongs to the Section Wastewater Treatment and Reuse)
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19 pages, 6271 KB  
Article
Acclimation Time Enhances Adaptation of Heterotrophic Nitrifying-Aerobic Denitrifying Microflora to Linear Anionic Surfactant Stress
by Huihui Han, Peizhen Chen, Wenjie Zhao, Shaopeng Li and Keyu Zhang
Microorganisms 2025, 13(5), 1031; https://doi.org/10.3390/microorganisms13051031 - 29 Apr 2025
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Abstract
Linear anionic surfactants (LAS) pose significant stress to microbial denitrification in wastewater treatment. This study investigated the performance and adaptation mechanisms of heterotrophic nitrification-aerobic denitrification (HN-AD) microbial consortia under LAS exposure after short-term (SCM, 2 months) and long-term (LCM, 6 months) acclimation. Results [...] Read more.
Linear anionic surfactants (LAS) pose significant stress to microbial denitrification in wastewater treatment. This study investigated the performance and adaptation mechanisms of heterotrophic nitrification-aerobic denitrification (HN-AD) microbial consortia under LAS exposure after short-term (SCM, 2 months) and long-term (LCM, 6 months) acclimation. Results showed a dose-dependent inhibition of total nitrogen (TN) removal, with LCM achieving 97.40% TN removal under 300 mg/L LAS, which was 16.89% higher than SCM. Biochemical assays indicated that LCM exhibited lower reactive oxygen species (ROS) levels, a higher ATP content, and reduced LDH release, suggesting enhanced oxidative stress resistance and membrane stability. EPS secretion also increased in LCM, contributing to environmental tolerance. Metagenomic analysis revealed that long-term acclimation enriched key genera including Pseudomonas, Aeromonas, and Stutzerimonas, which maintained higher expression of denitrification (e.g., nosZ, nirS) and ammonium assimilation genes (glnA, gltB). Although high LAS concentrations reduced overall community diversity and led to convergence between SCM and LCM structures, LCM retained greater functional capacity and stress resistance. These findings underscore the importance of acclimation in sustaining denitrification performance under surfactant pressure and offer valuable insights for engineering robust microbial consortia in complex wastewater environments. Full article
(This article belongs to the Section Microbiomes)
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