Search Results (43)

G protein-coupled receptors (GPCR) are targeted by more than one third of the clinically available drugs as specific ligands. Important as GPCR ligands may be, cases of ligand-independent GPCR activation are also abundant. In a recent article published in the journal ACS Nano, a series of cyanine skeleton-based plasmonic molecules, or molecular jackhammer, as the authors christened them, after insertion into the plasma membrane, was found after excitation by far-red light (730 nm) to vibronically-driven activate Gq-mediated calcium signaling in four different cell lines of both epithelial and muscle cell origin, which is normally activated after agonist stimulation of Gq-coupled GPCR, but the possible involvement of GPCR remains to be examined. This novel mode of activation of calcium signaling, normally associated with agonist-stimulated GPCR activation, is compared to nanoclustering activation of the neuropeptide Y2 receptor and photodynamic activation of the cholecystokinin 1 and 2 receptors. Full article

In this report, a thickness-driven, aggregation–structure–transport optimum in sonicated poly(3-hexylthiophene) (P3HT) FETs was investigated. Mobility peaks at ~10–20 nm, coincident with a minimum in the photoluminescence (PL) vibronic ratio $I_{0-0}/I_{0-1}$ (strong H-aggregate interchain coupling) and X-ray diffraction sharpening of the (100) lamellar peak with slightly reduced d-spacing, indicate tighter π–π stacking and larger crystalline coherence. Absorption analysis (Spano model) is consistent with this enhanced interchain order. The mobility maximum arises from an optimal balance: J-aggregate–like intrachain planarity supports along-chain transport, while H-aggregates provide interchain connectivity for efficient hopping. Below this thickness, insufficient interchain coupling limits transport; above it, over-aggregation and disorder introduce traps and weaken gate control. The sharp rise in threshold voltage beyond the critical thickness indicates more trap states or fixed charges forming within the film bulk. As a result, a larger gate bias is needed to deplete the channel (remove excess holes) and switch the device off. These results show that electrical gating can be tuned via solution processing (sonication) and film thickness—guiding the design of P3HT devices for photovoltaics and sensing. Full article

The mechanism by which odorants are recognized by olfactory receptors remains primarily unresolved. While charge transport is believed to play a significant role, its precise nature is still unclear. Here, we present a novel perspective by exploring the interplay between the intrinsic energy scales of odorant molecules and the gap states that facilitate intermolecular charge transport. We find that odorants act as weak tunneling conductors mainly because of the limited magnitude of electronic coupling between frontier molecular levels. This behavior is further connected to electron–phonon interaction and reorganization energy, suggesting that physically meaningful values for the latter parameter emerge only in the deep off-resonant tunneling regime. These findings complement the swipe card model of olfaction, in which an odorant needs both the right shape to bind to a receptor and the correct vibrational frequency to trigger signal transduction. Moreover, they reveal that the underlying mechanisms are much more complex than previously assumed. Full article

In this study, the fluorescence (FL) behavior of a fluorenone derivative (FDMFA) in four chlorinated hydrocarbon solvents was investigated. While all four solvents have low polarities, their proticities are considerably different. Therefore, the FL properties of FDMFA could be considered to depend solely on the solvent’s proticity, with any polarity effects being insignificant. The hydrogen bond donor acidity was used as a measure of proticity, with higher values representing greater FL quenching due to vibronic coupling. The hydrogen bonding between FDMFA and the solvents could be thermodynamically controlled; thus, the FL emission was substantially enhanced during the heating process and quenched again during the cooling process. This change occurred reversibly and repeatedly. Because chlorinated hydrocarbon solvents are widely used for reaction and cleaning purposes in industrial applications, the findings of this study will be helpful in ensuring that such solvents are appropriately handled. Full article

The valence-shell electronic state spectroscopy of β-butyrolactone (CH₃CHCH₂CO₂) is comprehensively investigated by employing experimental and theoretical methods. We report a novel vacuum ultraviolet (VUV) absorption spectrum in the photon wavelength range from 115 to 320 nm (3.9–10.8 eV), together with ab initio quantum chemical calculations at the time-dependent density functional (TD-DFT) level of theory. The dominant electronic excitations are assigned to mixed valence-Rydberg and Rydberg transitions. The fine structure in the CH₃CHCH₂CO₂ photoabsorption spectrum has been assigned to C=O stretching, $v_7^{\prime }\left(a\right)$, CH₂ wagging, $v_{14}^{\prime }\left(a\right)$, C–O stretching, $v_{22}^{\prime }\left(a\right)$, and C=O bending, $v_{26}^{\prime }\left(a\right)$ modes. Photolysis lifetimes in the Earth’s atmosphere from 0 km up to 50 km altitude have been estimated, showing to be a non-relevant sink mechanism compared to reactions with the ^•OH radical. The nuclear dynamics along the C=O and C–C–C coordinates have been investigated at the TD-DFT level of theory, where, upon electronic excitation, the potential energy curves show important carbonyl bond breaking and ring opening, respectively. Within such an intricate molecular landscape, the higher-lying excited electronic states may keep their original Rydberg character or may undergo Rydberg-to-valence conversion, with vibronic coupling as an important mechanism contributing to the spectrum. Full article

In this work, we provide results from a joint experimental and theoretical study of the vibronic features of cyclohexane (C₆H₁₂) in the photon energy range of 6.8–10.8 eV (182–115 nm). The high-resolution vacuum ultraviolet (VUV) photoabsorption measurements, together with quantum chemical calculations at the time-dependent density functional theory (TDDFT) level, have helped to assign the major electronic excitations to mixed valence–Rydberg and Rydberg transitions. The C₆H₁₂ photoabsorption spectrum shows fine structure which has been assigned to CH₂ scissoring, $v_3^{\prime }\left(a_{1g}\right)$, CH₂ rocking, $v_4^{\prime }\left(a_{1g}\right)$, C–C stretching, $v_5^{\prime }\left(a_{1g}\right)$, and CCC bending/CC torsion, $v_{24}^{\prime }\left(e_g\right),$ modes. Molecular structure calculations at the DFT level for the neutral and cationic electronic ground-states have shown the relevant structural changes that are operative in the higher-lying electronic states. Photolysis lifetimes in the Earth’s atmosphere are shown to be irrelevant, while the main atmospheric sink mechanism is the reaction with the ^•OH radical. Potential energy curves have been obtained at the TDDFT level of theory, showing the relevance of interchange character mainly involving the CH₂ scissoring, $v_3^{\prime }\left(a_{1g}\right),$ and CH₂ rocking, $v_4^{\prime }\left(a_{1g}\right),$ modes, while Jahn–Teller distortion yields weak vibronic coupling involving the non-totally symmetric CCC bending/CC torsion, $v_{24}^{\prime }\left(e_g\right),$ mode. Full article

The preparation of two 1-acyl-8-pyrrolylnaphthalenes (5 and 6) and one pyrrolone (8) are reported along with the issues complicating the preparations of other compounds. The photophysical behavior of the fused, planar derivative 6 is explored in detail. The fluorescence of 6 shows solvato-chromism due to intramolecular charge transfer in the excited state and enhanced emission in protic solvents. The emission intensity increases very linearly with the H-bond-donating strength of the solvent. Preferential solvation studies, multilinear regression analysis and computational modeling suggest that the fluorescence enhancement results from inhibition of the spin–orbit coupling-promoted intersystem crossing from the π→π* singlet state to an n→π* triplet state. Some of the inhibitions are due to the dielectric stabilization of the excited singlet state. A stronger effect is obtained from H-bonding, which not only further stabilizes the singlet state but also negatively impacts the vibronic coupling between the states. Full article

Vibrational circular dichroism (VCD) enhancement by low-lying electronic states (LLESs) is a fascinating phenomenon, but accounting for it theoretically remains a challenge despite significant research efforts over the past 20 years. In this article, we synthesized two transition metal complexes using the tetradentate Schiff base ligands (R,R)- and (S,S)-N,N′-Bis(3,5-di-tert-butylsalicylidene)-1,2-cyclohexanediamine with Co(II) and Mn(III), referred to as Co(II)-salen-chxn and Mn(III)-Cl-salen-chxn, respectively. Their stereochemical properties were explored through a combined experimental chiroptical spectroscopic and theoretical approach, with a focus on Co(II)-salen-chxn. Extensive conformational searches in CDCl₃ for both high- and low-spin states were carried out and the associated infrared (IR), VCD, ultraviolet-visible (UV-Vis) absorption, and electronic circular dichroism (ECD) spectra were simulated. A good agreement between experimental and simulated data was achieved for IR, VCD, UV-Vis, and ECD, except in the case of VCD of Co(II)-salen-chxn which exhibits significant intensity enhancement and monosignate VCD bands, attributed to the LLESs. Interestingly, detailed comparisons with Mn(III)-Cl-salen-chxn and previously reported Ni(II)-salen-chxn and Cu(II)-salen-chxn complexes suggest that the enhancement factor is predicted by the current density functional theory simulations. However, the monosignate signatures observed in the experimental Co(II) VCD spectrum were not captured theoretically. Based on the experiment and theoretical VCD and ECD comparison, it is tentatively suggested that Co(II)-salen-chxn exists in both low- and high-spin states, with the former being dominant, while Mn(III)-Cl-salen-chxn in the high-spin state. The study indicates that VCD enhancement by LLESs is at least partially captured by the existing theoretical simulation, while the symmetry consideration in vibronic coupling provides further insight into the mechanisms behind the VCD sign-flip. Full article

Bulk 2D electronic–vibrational (2D-EV) and 2D vibrational–electronic spectroscopies (2D-VE) were previously developed to correlate the electronic and vibrational degrees of freedom simultaneously, which allow for the study of couplings between electronic and vibrational transitions in photo-chemical systems. Such bulk-dominated methods have been used to extensively study molecular systems, providing unique information such as coherence sensitivity, molecular configurations, enhanced resolution, and correlated states and their dynamics. However, the analogy of interfacial 2D spectroscopy has fallen behind. Our recent work presented interface-specific 2D-EV spectroscopy (i2D-EV). In this work, we develop interface-specific two-dimensional vibrational–electronic spectroscopy (i2D-VE). The fourth-order spectroscopy is based on a Mach–Zehnder IR interferometer that accurately controls the time delay of an IR pump pulse pair for vibrational transitions, followed by broadband interface second-harmonic generation to probe electronic transitions. We demonstrate step-by-step how a fourth-order i2D-VE spectrum of AP3 molecules at the air/water interface was collected and analyzed. The line shape and signatures of i2D-VE peaks reveal solvent correlations and the spectral nature of vibronic couplings. Together, i2D-VE and i2D-EV spectroscopy provide coupling of different behaviors of the vibrational ground state or excited states with electronic states of molecules at interfaces and surfaces. The methodology presented here could also probe dynamic couplings of electronic and vibrational motions at interfaces and surfaces, extending the usefulness of the rich data that are obtained. Full article

Non-adiabatic processes near conical intersections are rooted in the stronger coupling between electronic and nuclear degrees of freedom. Using a system of two trapped Rydberg ions, their high polarizability and strong dipolar interactions allow to form a conical intersection, where dynamics takes place on a microsecond time scale. Rydberg lifetimes are typically from a few to tens of microseconds, which could affect the conical dynamics. We study the effect of the finite lifetime of the Rydberg state on the vibronic dynamics around the conical intersection via analyzing the master equation. Through mean field and numerical calculations, damping dynamics are found in both the phonon populations and electronic states depending on the initial states. It is found that oscillatory vibronic dynamics can be seen clearly within the Rydberg lifetime, permitting to observe the conical effect in the trapped Rydberg ion system. Full article

The hybrid heterostructures formed between two-dimensional (2D) materials and organic molecules have gained great interest for their potential applications in advanced photonic and optoelectronic devices, such as solar cells and biosensors. Characterizing the interfacial structure and dynamic properties at the molecular level is essential for realizing such applications. Here, we report a time-resolved sum-frequency generation (TR-SFG) approach to investigate the hybrid structure of polymethyl methacrylate (PMMA) molecules and 2D transition metal dichalcogenides (TMDCs). By utilizing both infrared and visible light, TR-SFG can provide surface-specific information about both molecular vibrations and electronic transitions simultaneously. Our setup employed a Bragg grating for generating both a narrowband probe and an ultrafast pump pulse, along with a synchronized beam chopper and Galvo mirror combination for real-time spectral normalization, which can be readily incorporated into standard SFG setups. Applying this technique to the TMDC/PMMA interfaces yielded structural information regarding PMMA side chains and dynamic responses of both PMMA vibrational modes and TMDC excitonic transitions. We further observed a prominent enhancement effect of the PMMA vibrational SF amplitude for about 10 times upon the resonance with TMDC excitonic transition. These findings lay a foundation for further investigation into interactions at the 2D material/organic molecule interfaces. Full article

This article is largely oriented towards the theoretical foundations of the rational design of molecular cells for quantum cellular automata (QCA) devices with optimized properties. We apply the vibronic approach to the analysis of the two key properties of such molecular cells, namely the cell–cell response and energy dissipation in the course of the non-adiabatic switching of the electric field acting on the cell. We consider two kinds of square planar cells, namely cells represented by a two-electron tetrameric mixed valence (MV) cluster and bidimeric cells composed of two one-electron MV dimeric half-cells. The model includes vibronic coupling of the excess electrons with the breathing modes of the redox sites, electron transfer, intracell interelectronic Coulomb repulsion, and also the interaction of the cell with the electric field of polarized neighboring cells. For both kinds of cells, the heat release is shown to be minimal in the case of strong delocalization of excess electrons (weak vibronic coupling and/or strong electron transfer) exposed to a weak electric field. On the other hand, such a parametric regime proves to be incompatible with a strong nonlinear cell–cell response. To reach a compromise between low energy dissipation and a strong cell–cell response, we suggest using weakly interacting MV molecules with weak electron delocalization as cells. From this point of view, bidimeric cells are advantageous over tetrameric ones due to their smaller number of electron transfer pathways, resulting in a lower extent of electron delocalization. The distinct features of bidimeric cells, such as their two possible mutual arrangements (“side-by-side” and “head-to-tail”), are discussed as well. Finally, we briefly discuss some relevant results from a recent ab initio study on electron transfer and vibronic coupling from the perspective of the possibility of controlling the key parameters of molecular QCA cells. Full article

A reaction center is a unique biological system that performs the initial charge separation within a Photosystem II (PSII) multiunit enzyme, which eventually drives the catalytic water-splitting in plants and algae. The possible role of quantum coherences coinciding with the energy and charge transfer processes in PSII reaction center is one of the active areas of research. Here, we study these quantum coherences by using a numerically exact method on an excitonic dimer model, including linear vibronic coupling and employing optimal parameters from experimental two-dimensional coherent spectroscopic measurements. This enables us to precisely capture the excitonic interaction between pigments and the dissipation of the energy from electronic and charge-transfer (CT) states to the protein environment. We employ the time nonlocal (TNL) quantum master equation to calculate the population dynamics, which yields numerically reliable results. The calculated results show that, due to the strong dissipation, the lifetime of electronic coherence is too short to have direct participation in the charge transfer processes. However, there are long-lived vibrational coherences present in the system at frequencies close to the excitionic energy gap. These are strongly coupled with the electronic coherences, which makes the detection of the electronic coherences with conventional techniques very challenging. Additionally, we unravel the strong excitonic interaction of radical pair ($P_{D1}$ and $P_{D2}$) in the reaction center, which results in a long-lived electronic coherence of >100 fs, even at room temperature. Our work provide important physical insight to the charge separation process in PSII reaction center, which may be helpful for better understanding of photophysical processes in other natural and artificial light-harvesting systems. Full article

The short-range charge transfer of DNA base triplets has wide application prospects in bioelectronic devices for identifying DNA bases and clinical diagnostics, and the key to its development is to understand the mechanisms of short-range electron dynamics. However, tracing how electrons are transferred during the short-range charge transfer of DNA base triplets remains a great challenge. Here, by means of ab initio molecular dynamics and Ehrenfest dynamics, the nuclear–electron interaction in the thymine-adenine-thymine (TAT) charge transfer process is successfully simulated. The results show that the electron transfer of TAT has an oscillating phenomenon with a period of 10 fs. The charge density difference proves that the charge transfer proportion is as high as 59.817% at 50 fs. The peak position of the hydrogen bond fluctuates regularly between −0.040 and −0.056. The time-dependent Marcus–Levich–Jortner theory proves that the vibrational coupling between nucleus and electron induces coherent electron transfer in TAT. This work provides a real-time demonstration of the short-range coherent electron transfer of DNA base triplets and establishes a theoretical basis for the design and development of novel biological probe molecules. Full article

The rare-earth ions in crystals such as terbium (YTaO₄:Tb³⁺) and europium (YTaO₄:Eu³⁺)-activated yttrium tantalate phosphors have a number of attractive features that predetermine their crucial role in practical application in contemporary optoelectronic devices. In this article, we employ the group-theoretical arguments aimed to reveal the group-theoretical classification of the crystal field levels and selection rules for the allowed optical transition between the crystal field components of Tb³⁺ and Eu³⁺ of the low symmetry crystal field in the activated yttrium tantalate phosphors. We also establish possible polarization rules for the lines corresponding to the allowed transitions. We deduce the symmetry-assisted results for the selection rules in the optical transitions accompanied by the absorption/emission of the vibrational quanta. The selection rules for the vibronic satellites of the zero-phonon lines are expected to be useful for the identification of the lines in the spectra of rare-earth ions with a weak vibronic coupling. The results of the low-temperature measurements of photoluminescence under the 325 nm excitation are in compliance with the group-theoretical analysis. The aim of the paper is to establish symmetry-assisted results that are the background of the quantitative crystal field theory based on the quantum-mechanical consideration. Full article