Resistant Bacteria: Molecular Studies and Antimicrobial Resistance

A special issue of Antibiotics (ISSN 2079-6382).

Deadline for manuscript submissions: closed (30 September 2023) | Viewed by 8235

Special Issue Editor


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Guest Editor
National Laboratory for Scientific Computing (LNCC), Av. Getulio Vargas, 333, Quitandinha 25651-075, Petrópolis, Rio de Janeiro, Brazil
Interests: genomics; bacteria; clinical pathogens; transcriptomes

Special Issue Information

Dear Colleagues,

Although the availability and use of antibiotics represented one of the most outstanding achievements of humanity at the beginning of the 20th century, enabling the control of bacterial diseases considered deadly in the pre-antibiotic era, the emergence of resistant bacteria, often called "superbugs," now represents a source of concern in both animal and human clinical practice. The first reports of antibiotic-resistant bacteria date from the beginning of the clinical use of these compounds in the first half of the 20th century. The concern about antimicrobial resistance (AMR) had already been announced by the discovery of penicillin by Alexander Fleming, in December 1945, in his Nobel Prize speech. Antibiotic resistance occurs through different mechanisms and represents a response that the bacterial population develops to a selective pressure imposed by the drug. In this regard, individuals who can survive the compound have a greater chance of being selected (in an evolutionary context) and, later, developing in sub-populations resistant to the antibiotic in question. In this current context, besides the studies to determine new molecular targets and new antimicrobial drugs, the mitigation of the AMR crisis also becomes essential for the present and future control of bacterial pathogens presenting resistance to multiple drugs. The relevance of AMR is highlighted in a recent WHO report (New report calls for urgent action to avert antimicrobial resistance crisis, April 29, 2019), predicting that diseases caused by drug-resistant microorganisms could cause 10 million deaths each year by 2050.

This Special Issue titled "Resistant Bacteria: Molecular Studies and Antimicrobial Resistance" aims to bring together relevant articles in this area of research, in particular, but not limited to, the following topics:

  • Antimicrobial resistance (AMR) crisis;
  • Mitigation of antimicrobial resistance;
  • AMR: molecular mechanisms;
  • Antimicrobial activity studies;
  • Identification and characterization of multidrug-resistant (MDR) bacterial strains, including sequence analyses;
  • Prioritization of molecular targets in MDR strains;
  • Analyses of resistance genes and proteins;
  • Molecular target in vivo, in vitro or in silico analyses;
  • New anti-MDR antibiotics/drugs;
  • Antimicrobial antibodies;
  • One Health approach;
  • Nanoparticles and drug delivery of novel antimicrobials.

Dr. Marisa Fabiana Nicolás
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Antibiotics is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2900 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • antimicrobial resistance (AMR)
  • antibiotics
  • multidrug-resistant bacteria
  • molecular targets
  • antimicrobial antibodies
  • One Health
  • mitigation of AMR

Published Papers (3 papers)

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Research

16 pages, 4983 KiB  
Article
Functional Characterization, Mechanism, and Mode of Action of Putative Streptomycin Adenylyltransferase from Serratia marcescens
by Dhamodharan Prabhu, Sundararaj Rajamanikandan, Mathimaran Amala, Poopandi Saritha, Jeyaraman Jeyakanthan and Palaniappan Ramasamy
Antibiotics 2022, 11(12), 1722; https://doi.org/10.3390/antibiotics11121722 - 30 Nov 2022
Cited by 1 | Viewed by 1724
Abstract
Nosocomial infections are serious threats to the entire world in healthcare settings. The major causative agents of nosocomial infections are bacterial pathogens, among which Enterobacteriaceae family member Serratia marcescens plays a crucial role. It is a gram-negative opportunistic pathogen, predominantly affecting patients in [...] Read more.
Nosocomial infections are serious threats to the entire world in healthcare settings. The major causative agents of nosocomial infections are bacterial pathogens, among which Enterobacteriaceae family member Serratia marcescens plays a crucial role. It is a gram-negative opportunistic pathogen, predominantly affecting patients in intensive-care units. The presence of intrinsic genes in S. marcescens led to the development of resistance to antibiotics for survival. Complete scanning of the proteome, including hypothetical and partially annotated proteins, paves the way for a better understanding of potential drug targets. The targeted protein expressed in E. coli BL21 (DE3) pLysS cells has shown complete resistance to aminoglycoside antibiotic streptomycin (>256 MCG). The recombinant protein was purified using affinity and size-exclusion chromatography and characterized using SDS-PAGE, western blotting, and MALDI-TOF analysis. Free phosphate bound to malachite green was detected at 620 nm, evident of the conversion of adenosine triphosphate to adenosine monophosphate during the adenylation process. Similarly, in the chromatographic assay, adenylated streptomycin absorbed at 260 nm in AKTA (FPLC), confirming the enzyme-catalyzed adenylation of streptomycin. Further, the adenylated product of streptomycin was confirmed through HPLC and mass spectrometry analysis. In conclusion, our characterization studies identified the partially annotated hypothetical protein as streptomycin adenylyltransferase. Full article
(This article belongs to the Special Issue Resistant Bacteria: Molecular Studies and Antimicrobial Resistance)
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9 pages, 478 KiB  
Article
Limited Therapeutic Options in Mexico for the Treatment of Urinary Tract Infections
by Guadalupe Miranda-Novales, Karen Flores-Moreno, Yolanda López-Vidal, Samuel Ponce de León-Rosales and PUCRA Network Members
Antibiotics 2022, 11(11), 1656; https://doi.org/10.3390/antibiotics11111656 - 18 Nov 2022
Cited by 2 | Viewed by 3905
Abstract
The rise in antimicrobial resistance (AMR) has complicated the management of urinary tract infections (UTIs). The objective of this study was to evaluate the antimicrobial susceptibility patterns of Escherichia coli and Klebsiella pneumoniae. Design: prospective observational study. Bacteria were classified as susceptible or [...] Read more.
The rise in antimicrobial resistance (AMR) has complicated the management of urinary tract infections (UTIs). The objective of this study was to evaluate the antimicrobial susceptibility patterns of Escherichia coli and Klebsiella pneumoniae. Design: prospective observational study. Bacteria were classified as susceptible or resistant to ampicillin-sulbactam, amikacin, gentamicin, ciprofloxacin, norfloxacin, nitrofurantoin, trimethoprim-sulfamethoxazole (TMP/SMZ), ertapenem, meropenem, and fosfomycin. The sensitivity to fosfomycin and chloramphenicol was evaluated by the disk diffusion method. Statistical analysis: the chi-square test and Fisher’s exact test were used to compare differences between categories. A p value < 0.05 was considered statistically significant. Isolates were collected from January 2019 to November 2020 from 21 hospitals and laboratories. A total of 238 isolates were received: a total of 156 E. coli isolates and 82 K. pneumoniae isolates. The majority were community-acquired infections (64.1%). Resistance was >20% for beta-lactams, aminoglycosides, fluoroquinolones, and TMP/SMZ. For E. coli isolates, resistance was <20% for amikacin, fosfomycin, and nitrofurantoin; for K. pneumoniae, amikacin, fosfomycin, chloramphenicol, and norfloxacin. All were susceptible to carbapenems. K. pneumoniae isolates registered a higher proportion of extensively drug-resistant bacteria in comparison with E. coli (p = 0.0004). In total, multidrug-resistant bacteria represented 61% of all isolates. Isolates demonstrated high resistance to beta-lactams, fluoro-quinolones, and TMP/SMZ. Full article
(This article belongs to the Special Issue Resistant Bacteria: Molecular Studies and Antimicrobial Resistance)
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17 pages, 6672 KiB  
Article
Anti-Restriction Gene Homologs Are Highly Represented in Methicillin-Resistant and Multidrug-Resistant Staphylococcus aureus ST239 and ST398: Implications for Resistance Gene Acquisitions
by Deborah Nascimento Santos Silva, Cristiana Ossaille Beltrame, Ana Maria Nunes Botelho, Caroline Lopes Martini, Matheus Assis Côrtes Esteves, Isabella Alvim Guedes, Laurent Emmanuel Dardenne and Agnes Marie Sá Figueiredo
Antibiotics 2022, 11(9), 1217; https://doi.org/10.3390/antibiotics11091217 - 8 Sep 2022
Cited by 1 | Viewed by 1671
Abstract
Multidrug resistance is commonly acquired by transferring DNA from one bacterium to another. However, the mechanisms that enhance the acquisitions of foreign genes are poorly understood, as well as the dynamics of their transmission between hosts in different environments. Here, genomic approaches were [...] Read more.
Multidrug resistance is commonly acquired by transferring DNA from one bacterium to another. However, the mechanisms that enhance the acquisitions of foreign genes are poorly understood, as well as the dynamics of their transmission between hosts in different environments. Here, genomic approaches were applied to evaluate the enrichment of the S. aureus chromosome with resistance traits in groups of genomes with or without anti-restriction genes and to analyze some evolutionary aspects of these acquisitions. Furthermore, the role played by an anti-restriction gene in improving multiresistance in MRSA was investigated by molecular cloning. A strong association was observed between the presence of anti-restriction gene homologs and patterns of multidrug resistance. Human isolates, mainly ST239-SCCmecIII, carry ardA-H1, and from animal sources, mainly CC398, carry ardA-H2. Increased DNA transfer was observed for clones that express the ardA-H1 allele, corroborating its role in promoting gene transfer. In addition, ardA-H1 was expressed in the dsDNA format in the BMB9393 strain. The evolution of successful multidrug-resistant MRSA lineages of the ST239 and ST398 was initiated not only by the entry of the mec cassette but also by the acquisition of anti-restriction gene homologs. Understanding the mechanisms that affect DNA transfer may provide new tools to control the spread of drug resistance. Full article
(This article belongs to the Special Issue Resistant Bacteria: Molecular Studies and Antimicrobial Resistance)
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