Yeast Biotechnology

A topical collection in Fermentation (ISSN 2311-5637). This collection belongs to the section "Microbial Metabolism, Physiology & Genetics".

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Collection Editor
Structural Biology Brussels Lab, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
Interests: yeast biotechnology; cell immobilization; beer brewing biochemistry and fermentation; mini- and microbioreactors; Saccharomyces cerevisiae; Candida; yeast space biology (bioreactors for microgravity research); yeast adhesins; yeast systems biology; glycobiology; nanobiotechnology; Atomic Force Microscopy; protein crystallization; yeast protein structural biology
Special Issues, Collections and Topics in MDPI journals

Topical Collection Information

Dear Colleagues,

Yeasts are truly fascinating microorganisms. Due to their diverse and dynamic activities, they have been used to produce many interesting products, such as beer, wine, bread, biofuels and biopharmaceuticals. Saccharomyces cerevisiae (bakers’ yeast) is likely the most human-exploited yeast species. Saccharomyces is a popular choice for industrial applications, although its use in beer production dates to at least the sixth millennium BC. Bakers’ yeast represents a cornerstone of modern biotechnology, enabling the development of efficient production processes for antibiotics, biopharmaceuticals, technical enzymes, and ethanol and biofuels.

Today, diverse yeast species are explored for industrial applications, such as, e.g., the Saccharomyces species, Pichia pastoris and other Pichia species, Kluyveromyces marxianus, Hansenula polymorpha, Yarrowia lipolytica, Candida species, Phaffia rhodozyma, wild yeasts for beer brewing and winemaking, and others with proven potential.

Yeast cells can also be benign for humans, since some yeast species can be pathogenic and cause infections, especially in individuals with weakened immune systems. Strategies to fight pathogenic yeasts have been developed through recent endeavors, such as the development of synthetic antifungal agents, the use of natural products with antifungal activity, and the use of yeasts with antimicrobial infections. Other strategies such as biocontrol agents, reactive oxygen species and RNA interference have been developed to combat pathogenic yeasts. These approaches aim to inhibit the growth and survival of pathogenic yeasts, thereby preventing and treating yeast infections.

This Topical Collection, “Yeast Biotechnology”, is a continuation of the Special Issues “Yeast Biotechnology” series of Fermentation (published by MDPI). This installment will compile the current state-of-the-art research and technology in the area of yeast biotechnology, and highlight the prominent research directions for hot topics, such as recently developed techniques for characterizing yeast and their physiology (including omics and nanobiotechnology techniques), methods for adapting industrial strains (including metabolic, synthetic and evolutionary engineering) and the use of yeasts as microbial cell factories to produce biopharmaceuticals, enzymes, alcohols, organic acids, flavors and fine chemicals, advances in yeast fermentation technology and industrial fermentation processes, as well as yeast biotechnology strategies in fighting pathogenic yeasts.

Topics of interest include, but are not limited to:

Yeast characterization and analysis:
Brewing yeasts (including wild yeasts), wine yeasts and baker’s yeasts;
Evolution and variation in industrial yeast genomes;
Yeast systems biology: genomics, proteomics, fluxomics, metabolomics, and omics integration;
Yeast nanobiotechnology (nano-analysis techniques, construction of nanostructures, etc.).

Yeast strain engineering:
Yeast metabolic engineering: production of biofuels, secondary metabolites, commodity chemicals, proteins, biopharmaceuticals and material precursors;
Yeast synthetic biology: yeasts as cell factories, tools for controlling enzyme expression levels, strategies for regulating spatial localization of enzymes in yeast, regulatory networks and biomolecular logic gates;
Strain improvement via evolutionary engineering.

Fermentation technology:
Industrial bioreactors;
Mini- and micro-bioreactors: single-cell analysis, high-throughput screening and microfluidic bioreactors;
Process intensification: high-density fermentations, high-gravity fermentation, yeast cell immobilization;
Fermentative stress adaptation.

Industrial fermentation processes:
Production of food (bread, etc.) and beverages (beer, wine, cider, etc.);
Production of bakers’ yeast;
Production of biofuels (bioethanol, 1-butanol, biodiesel, jetfuels), commodity chemicals, pharmaceuticals, material precursors, and secondary metabolites.

Fight against pathogenic yeasts:
Antifungal agents, yeast killer toxins, probiotic yeasts, and biocontrol agent development and assessment.

Prof. Dr. Ronnie Willaert
Guest Editor

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Keywords

  • systems biology
  • genomics
  • proteomics
  • fluxomics
  • metabolomics
  • synthetic yeast biology
  • metabolic engineering
  • evolutionary engineering
  • industrial yeast products
  • beer
  • wine
  • bread
  • biofuels
  • commodity chemical
  • biopharmaceuticals
  • material precursors
  • yeast fermentation technology
  • industrial bioreactors
  • mini- and microbioreactors
  • high-density fermentations
  • yeast stress adaptation
  • yeast biotechnology to fight pathogenic yeasts

Related Special Issues

Published Papers (4 papers)

2024

23 pages, 1856 KiB  
Review
Exploring Microbial Dynamics: The Interaction between Yeasts and Acetic Acid Bacteria in Port Wine Vinegar and Its Implications on Chemical Composition and Sensory Acceptance
by João Mota and Alice Vilela
Fermentation 2024, 10(8), 421; https://doi.org/10.3390/fermentation10080421 - 14 Aug 2024
Viewed by 1780
Abstract
Port wine vinegar, a product of the esteemed Port wine, is renowned for its intricate blend of flavors and aromas, a result of complex microbial interactions. This study delves into the fascinating world of yeast and acetic acid bacteria (AAB) interactions during fermentation, [...] Read more.
Port wine vinegar, a product of the esteemed Port wine, is renowned for its intricate blend of flavors and aromas, a result of complex microbial interactions. This study delves into the fascinating world of yeast and acetic acid bacteria (AAB) interactions during fermentation, which significantly influence the vinegar’s chemical composition and sensory properties. We specifically investigate the role of yeasts in fermenting sugars into ethanol, a process that AAB then converts into acetic acid. The impact of these interactions on the production of secondary metabolites, such as gluconic acid, ketones, aldehydes, and esters, which contribute to the vinegar’s unique sensory profile, is thoroughly examined. Advanced analytical techniques, including GC-MS and e-nose technology, alongside sensory evaluation, are employed to assess these effects. The research underscores the significance of ethanol tolerance in AAB and other production challenges in determining vinegar quality and underscores the importance of optimizing fermentation conditions and sustainable practices. The findings of this study underscore the importance of strain interactions and production techniques, which can significantly enhance the quality and market appeal of Port wine vinegar, providing valuable insights for the industry. This review also identifies exciting and critical areas for future research, inspiring further exploration and proposing strategies for advancing production and application in culinary, health, and industrial contexts. Full article
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21 pages, 3062 KiB  
Article
Bioprocess Optimization by Taguchi Design and Response Surface Analysis for Obtaining Active Yeast Used in Vinification
by Corina Dumitrache, Mihaela Violeta Ghica, Mihai Frîncu, Iuliana Diana Bărbulescu, Mihaela Begea, Camelia Filofteia Diguță, Cornel Baniță, Valeriu V. Cotea, Florentina Israel-Roming and Răzvan Ionuț Teodorescu
Fermentation 2024, 10(8), 413; https://doi.org/10.3390/fermentation10080413 - 9 Aug 2024
Viewed by 688
Abstract
This study presents the behavior of the identified yeast strain S. cerevisiae, isolated from Busuioacă de Bohotin grapes from the Pietroasa winery, during the process of fermentation to obtain dry active yeast biomass for the winemaking process. In this respect, we promoted [...] Read more.
This study presents the behavior of the identified yeast strain S. cerevisiae, isolated from Busuioacă de Bohotin grapes from the Pietroasa winery, during the process of fermentation to obtain dry active yeast biomass for the winemaking process. In this respect, we promoted an optimization strategy for obtaining active dry yeast biomass. The cultivation conditions for micropilot fermentation (temperature, pH, carbon source, and nitrogen source) were selected and designed according to a Taguchi design with four factors and three levels. Reproducibility testing was conducted under specific fermentation parameters: temperature (32 °C), pH (4.5), carbon source (12%), and nitrogen source (0.7%). Following the optimization process, two combinations of cultivation parameters were selected, and one of them, based on the results, was selected for further analysis. Quantitative data were obtained, showing dry yeast biomass (DCW) at 1.39 g/100 mL and protein content at 45.57%. The active yeast was then used in the winemaking process for Tămâioasă Românească and Busuioacă de Bohotin varieties at Pietroasa winery for validation. This optimization aims to facilitate easy and rapid production of fresh wine yeast tailored to the local winemaking practices of Pietroasa winery, with real application potential in other viticultural areas, aligning with the terroir concept. Full article
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24 pages, 4348 KiB  
Article
Bioremediation with an Alkali-Tolerant Yeast of Wastewater (Nejayote) Derived from the Nixtamalization of Maize
by Luis Carlos Román-Escobedo, Eliseo Cristiani-Urbina and Liliana Morales-Barrera
Fermentation 2024, 10(4), 219; https://doi.org/10.3390/fermentation10040219 - 17 Apr 2024
Viewed by 1152
Abstract
Nejayote, the wastewater from the nixtamalization of maize, is difficult to biodegrade due to its abundant calcium content; low levels of nitrogen, phosphorus, and easily assimilable sugars; elevated pH; and high chemical oxygen demand (COD). The aim of the present study was to [...] Read more.
Nejayote, the wastewater from the nixtamalization of maize, is difficult to biodegrade due to its abundant calcium content; low levels of nitrogen, phosphorus, and easily assimilable sugars; elevated pH; and high chemical oxygen demand (COD). The aim of the present study was to isolate microorganisms capable of utilizing filtered nejayote (NEM) as the only source of carbon for growth and to test the best microorganism for the bioremediation of this wastewater by lowering the level of pH and COD. Of the 15 strains of microorganisms tested, Rhodotorula mucilaginosa LCRE was chosen and identified using molecular techniques. Subsequently, its growth kinetics were characterized during cultivation in unenriched NEM (control) and NEM enriched with nitrogen and phosphorus salts. R. mucilaginosa LCRE showed a greater growth (6.9 ≤ X ≤ 8.9 g L−1), biomass yield (0.33 ≤ YX/S ≤ 0.39 g g−1), and specific growth rate (0.748 ≤ µ ≤ 0.80 day−1) in the enriched versus control NEM (X = 6.55 g L−1, YX/S = 0.28 g g−1, and µ = 0.59 day−1). However, a higher total sugar consumption (94.98%), better COD removal efficiency (75.5%), and greater overall COD removal rate (1.73 g L−1 h−1) were found in the control NEM. Hence, R. mucilaginosa LCRE holds promise for the efficient bioremediation of nejayote without costly pretreatments or nutrient supplementation. Full article
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15 pages, 3862 KiB  
Article
Co-Inoculation of Latilactobacillus sakei with Pichia kluyveri or Saccharomyces boulardii Improves Flavour Compound Profiles of Salt-Free Fermented Wheat Gluten
by Shuoyu Chen, Fanxin Zhang, Edwin Ananta, Jeroen André Muller, Youyun Liang, Yuan Kun Lee and Shao-Quan Liu
Fermentation 2024, 10(2), 75; https://doi.org/10.3390/fermentation10020075 - 24 Jan 2024
Viewed by 1443
Abstract
A wheat gluten fermentation process with the inoculation of different microorganisms under salt-free conditions has the potential to produce varying flavour profiles. As research on the co-fermentation of yeasts and lactic acid bacteria (LAB) in salt-free wheat gluten fermentation is scarce, the current [...] Read more.
A wheat gluten fermentation process with the inoculation of different microorganisms under salt-free conditions has the potential to produce varying flavour profiles. As research on the co-fermentation of yeasts and lactic acid bacteria (LAB) in salt-free wheat gluten fermentation is scarce, the current work studied the flavour impact on fermented wheat gluten by the co-inoculation of Latilactobacillus sakei with one yeast (Saccharomyces boulardii or Pichia kluyveri). The results showed that similar glucose and organic acid levels were detected, but early death of yeasts was observed during liquid-state fermentation (LSF) in co-fermentations. The concentrations of most free amino acids were comparable. Volatile compound analysis showed synergistic effects in co-cultured fermentations on the production of certain compounds such as isoamyl acetate. Principal component analysis revealed clear differences in volatile profiles between co-fermentation and single-strain fermentation. Therefore, a fermented sauce produced by co-inoculating LAB and yeast with a new and fruitier flavour was developed. Full article
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